Gene annotation
Transcriptome id Sobic.003G052900.1
Synonym lateral organ boundaries, SbLBD15;Ramosa2, Sb03g004590, LOB, ra2;maize ramosa2 homolog
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment" (PubMedID : 20499123)
- (PubMedID : 23108465)
LOB family (PubMedID : 16399802)
DUF260 domain containing protein, putative, expressed
UniProt C5XNG8 , Q27YF1 , I2AVZ4
Pfam PF03195
Panther DB PTHR31301 PTHR31301:SF23
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G63090 : Lateral organ boundaries (LOB) domain family protein
RAP-DB (Rice) LOC_Os01g07480.1 : DUF260 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a052884 , Zm00025a003841 , Zm00025a023282 , Zm00025a001561
Brachypodium PNT65593 , KQK02883 , KQK02882 , KQK02881 , KQK02880 , KQK02884 , KQK10975 , KQK10976 , KQJ96334 , KQK06241 , KQK06240 , KQK22581 , KQK23639 , KQK23638 , KQK14196 , KQK14197 , KQK14195 , KQK14198 , KQK14199 , PNT74441 , PNT74440 , PNT74443 , PNT74442 , PNT74444
Barley HORVU3Hr1G016690.3 , HORVU3Hr1G016690.2 , HORVU3Hr1G016690.1 , HORVU3Hr1G090240.6 , HORVU3Hr1G090240.2 , HORVU1Hr1G064640.4 , HORVU4Hr1G013630.9 , HORVU4Hr1G013630.8 , HORVU1Hr1G064640.1 , HORVU4Hr1G013630.5 , HORVU4Hr1G013630.4 , HORVU4Hr1G013630.7 , HORVU4Hr1G013630.6 , HORVU4Hr1G013630.1 , HORVU4Hr1G013630.3 , HORVU4Hr1G013630.2 , HORVU3Hr1G090250.1 , HORVU3Hr1G090250.3 , HORVU3Hr1G090250.2 , HORVU3Hr1G090250.5 , HORVU3Hr1G090250.4 , HORVU3Hr1G090250.6 , HORVU4Hr1G013630.11 , HORVU4Hr1G013630.10 , HORVU1Hr1G064640.3 , HORVU1Hr1G064640.2 , HORVU4Hr1G063160.6 , HORVU4Hr1G063160.4 , HORVU4Hr1G063160.5 , HORVU4Hr1G063160.3 , HORVU4Hr1G063160.1 , HORVU3Hr1G090240.3 , HORVU3Hr1G090240.1 , HORVU3Hr1G090240.4 , HORVU3Hr1G090240.5
Wheat TraesCS1A02G260000 , TraesCS4B02G224600 , TraesCS4D02G225200 , TraesCS4B02G016200 , TraesCS4A02G297500 , TraesCS4A02G067300 , TraesCS3D02G397200 , TraesCS3A02G402300 , TraesCS3B02G435700 , TraesCS1B02G270400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G030300 expressed protein -
2 Sobic.001G245800 expressed protein -
3 Sobic.001G455100 expressed protein -
4 Sobic.008G135300 thaumatin family domain containing protein, expressed -
5 Sobic.002G226500 "SG1(Ortholog in rice:Nakagawa et al., 2012)"(PubMedID : 31659856)@expressed protein -
6 Sobic.008G099100 expressed protein -
7 Sobic.001G295800 expressed protein -
8 Sobic.005G231300 thaumatin, putative, expressed -
9 Sobic.003G247600 serine/threonine-protein kinase, putative, expressed -
10 Sobic.006G119000 X8 domain containing protein, expressed -
11 Sobic.003G128900 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
12 Sobic.006G030200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
13 Sobic.007G018100 no apical meristem protein, putative, expressed -
14 Sobic.001G476300 homeobox associated leucine zipper, putative, expressed -
15 Sobic.001G514300 Glutathione S-transferase("PubMedID : 26759170,PubMedID : 24597475")@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
16 Sobic.009G021700 expressed protein -
17 Sobic.007G208100 heavy metal-associated domain containing protein, expressed -
18 Sobic.008G113900 AGAP002737-PA, putative, expressed -
19 Sobic.001G514200 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.003G151900 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic003G052900 Sobic003G052900 Sobic004G030300 Sobic004G030300 Sobic003G052900--Sobic004G030300 Sobic001G245800 Sobic001G245800 Sobic003G052900--Sobic001G245800 Sobic001G455100 Sobic001G455100 Sobic003G052900--Sobic001G455100 Sobic008G135300 Sobic008G135300 Sobic003G052900--Sobic008G135300 Sobic002G226500 Sobic002G226500 Sobic003G052900--Sobic002G226500 Sobic008G099100 Sobic008G099100 Sobic003G052900--Sobic008G099100 Sobic001G295800 Sobic001G295800 Sobic003G052900--Sobic001G295800 Sobic005G231300 Sobic005G231300 Sobic003G052900--Sobic005G231300 Sobic003G247600 Sobic003G247600 Sobic003G052900--Sobic003G247600 Sobic004G030300--Sobic003G052900 Sobic004G030300--Sobic002G226500 Sobic004G030300--Sobic001G245800 Sobic006G030200 Sobic006G030200 Sobic004G030300--Sobic006G030200 Sobic007G018100 Sobic007G018100 Sobic004G030300--Sobic007G018100 Sobic006G119000 Sobic006G119000 Sobic004G030300--Sobic006G119000 Sobic004G030300--Sobic003G247600 Sobic003G307400 Sobic003G307400 Sobic004G030300--Sobic003G307400 Sobic001G434300 Sobic001G434300 Sobic004G030300--Sobic001G434300 Sobic010G138300 Sobic010G138300 Sobic001G245800--Sobic010G138300 Sobic009G074500 Sobic009G074500 Sobic001G245800--Sobic009G074500 Sobic001G261460 Sobic001G261460 Sobic001G245800--Sobic001G261460 Sobic010G047600 Sobic010G047600 Sobic001G245800--Sobic010G047600 Sobic001G514200 Sobic001G514200 Sobic001G245800--Sobic001G514200 Sobic009G199001 Sobic009G199001 Sobic001G245800--Sobic009G199001 Sobic009G221800 Sobic009G221800 Sobic001G245800--Sobic009G221800 Sobic008G102800 Sobic008G102800 Sobic001G245800--Sobic008G102800 Sobic004G170800 Sobic004G170800 Sobic001G245800--Sobic004G170800 Sobic007G154200 Sobic007G154200 Sobic001G455100--Sobic007G154200 Sobic001G455100--Sobic008G099100 Sobic001G455100--Sobic008G135300 Sobic010G148800 Sobic010G148800 Sobic001G455100--Sobic010G148800 Sobic001G522700 Sobic001G522700 Sobic001G455100--Sobic001G522700 Sobic003G322100 Sobic003G322100 Sobic001G455100--Sobic003G322100 Sobic002G365550 Sobic002G365550 Sobic001G455100--Sobic002G365550 Sobic010G096400 Sobic010G096400 Sobic001G455100--Sobic010G096400 Sobic009G221500 Sobic009G221500 Sobic001G455100--Sobic009G221500 Sobic003G183300 Sobic003G183300 Sobic008G135300--Sobic003G183300 Sobic008G135300--Sobic001G455100 Sobic008G135300--Sobic008G099100 Sobic003G121000 Sobic003G121000 Sobic008G135300--Sobic003G121000 Sobic006G201000 Sobic006G201000 Sobic008G135300--Sobic006G201000 Sobic008G135300--Sobic001G522700 Sobic008G135300--Sobic007G154200 Sobic006G003100 Sobic006G003100 Sobic008G135300--Sobic006G003100 Sobic008G135300--Sobic008G102800 Sobic002G226500--Sobic006G030200 Sobic008G113900 Sobic008G113900 Sobic002G226500--Sobic008G113900 Sobic007G225400 Sobic007G225400 Sobic002G226500--Sobic007G225400 Sobic010G022500 Sobic010G022500 Sobic002G226500--Sobic010G022500 Sobic002G278200 Sobic002G278200 Sobic002G226500--Sobic002G278200 Sobic006G149300 Sobic006G149300 Sobic002G226500--Sobic006G149300 Sobic002G226500--Sobic006G119000 Sobic002G226500--Sobic003G052900 Sobic002G226500--Sobic004G030300 Sobic001G514300 Sobic001G514300 Sobic008G099100--Sobic001G514300 Sobic008G099100--Sobic001G455100 Sobic008G099100--Sobic005G231300 Sobic008G099100--Sobic007G154200 Sobic008G099100--Sobic008G135300 Sobic003G083600 Sobic003G083600 Sobic008G099100--Sobic003G083600 Sobic008G099100--Sobic006G201000 Sobic010G082000 Sobic010G082000 Sobic008G099100--Sobic010G082000 Sobic008G099100--Sobic003G322100 Sobic005G043000 Sobic005G043000 Sobic001G295800--Sobic005G043000 Sobic001G295800--Sobic001G514200 Sobic001G481000 Sobic001G481000 Sobic001G295800--Sobic001G481000 Sobic001G295800--Sobic003G307400 Sobic001G310300 Sobic001G310300 Sobic001G295800--Sobic001G310300 Sobic001G295800--Sobic009G221800 Sobic009G130300 Sobic009G130300 Sobic001G295800--Sobic009G130300 Sobic001G295800--Sobic003G052900 Sobic009G248100 Sobic009G248100 Sobic001G295800--Sobic009G248100 Sobic005G231300--Sobic001G514300 Sobic005G231300--Sobic003G083600 Sobic009G079900 Sobic009G079900 Sobic005G231300--Sobic009G079900 Sobic005G231300--Sobic008G099100 Sobic007G208100 Sobic007G208100 Sobic005G231300--Sobic007G208100 Sobic005G231300--Sobic006G030200 Sobic001G314000 Sobic001G314000 Sobic005G231300--Sobic001G314000 Sobic008G077300 Sobic008G077300 Sobic005G231300--Sobic008G077300 Sobic003G151900 Sobic003G151900 Sobic005G231300--Sobic003G151900 Sobic005G047100 Sobic005G047100 Sobic003G247600--Sobic005G047100 Sobic003G420100 Sobic003G420100 Sobic003G247600--Sobic003G420100 Sobic004G066900 Sobic004G066900 Sobic003G247600--Sobic004G066900 Sobic003G247600--Sobic007G208100 Sobic008G141200 Sobic008G141200 Sobic003G247600--Sobic008G141200 Sobic003G135400 Sobic003G135400 Sobic003G247600--Sobic003G135400 Sobic003G247600--Sobic003G052900 Sobic003G345700 Sobic003G345700 Sobic003G247600--Sobic003G345700 Sobic003G247600--Sobic006G119000
Octagon: transcription factors


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