Gene annotation
Transcriptome id Sobic.008G113900.1
Synonym Sb08g016780
Functional annotation AGAP002737-PA, putative, expressed
UniProt C5YP91
Pfam -
Panther DB PTHR13140 PTHR13140:SF440
NCBI CDD KOG0978; E3 ubiquitin ligase involved in syntaxin degradation
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os04g07280.1 : AGAP002737-PA, putative, expressed
MaizeGDB (Corn) Zm00025a057847 , Zm00025a054394 , Zm00025a054388
Brachypodium -
Barley -
Wheat TraesCS3B02G605600 , TraesCS3B02G606100 , TraesCS3B02G606200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G030200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
2 Sobic.005G231300 thaumatin, putative, expressed -
3 Sobic.001G514300 Glutathione S-transferase("PubMedID : 26759170,PubMedID : 24597475")@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
4 Sobic.002G226500 "SG1(Ortholog in rice:Nakagawa et al., 2012)"(PubMedID : 31659856)@expressed protein -
5 Sobic.008G114000 expressed protein -
6 Sobic.008G135300 thaumatin family domain containing protein, expressed -
7 Sobic.007G208100 heavy metal-associated domain containing protein, expressed -
8 Sobic.003G083600 DNA binding protein, putative, expressed -
9 Sobic.003G183300 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.010G022500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
11 Sobic.001G264400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hsp20/alpha crystallin family protein, putative, expressed -
12 Sobic.002G016400 monocopper oxidase, putative, expressed -
13 Sobic.006G149300 possible lysine decarboxylase domain containing protein, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
14 Sobic.008G077300 expressed protein -
15 Sobic.001G169400 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
16 Sobic.003G151900 peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.003G121000 peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.003G269100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AWPM-19-like membrane family protein, putative, expressed -
19 Sobic.010G179900 transferase family protein, putative, expressed -
20 Sobic.003G247600 serine/threonine-protein kinase, putative, expressed -


Gene co-expression network
sample Sobic008G113900 Sobic008G113900 Sobic006G030200 Sobic006G030200 Sobic008G113900--Sobic006G030200 Sobic005G231300 Sobic005G231300 Sobic008G113900--Sobic005G231300 Sobic001G514300 Sobic001G514300 Sobic008G113900--Sobic001G514300 Sobic002G226500 Sobic002G226500 Sobic008G113900--Sobic002G226500 Sobic008G114000 Sobic008G114000 Sobic008G113900--Sobic008G114000 Sobic008G135300 Sobic008G135300 Sobic008G113900--Sobic008G135300 Sobic007G208100 Sobic007G208100 Sobic008G113900--Sobic007G208100 Sobic003G083600 Sobic003G083600 Sobic008G113900--Sobic003G083600 Sobic003G183300 Sobic003G183300 Sobic008G113900--Sobic003G183300 Sobic006G119000 Sobic006G119000 Sobic006G030200--Sobic006G119000 Sobic006G030200--Sobic002G226500 Sobic006G030200--Sobic005G231300 Sobic006G030200--Sobic008G113900 Sobic006G030200--Sobic001G514300 Sobic008G077300 Sobic008G077300 Sobic006G030200--Sobic008G077300 Sobic001G264400 Sobic001G264400 Sobic006G030200--Sobic001G264400 Sobic009G210400 Sobic009G210400 Sobic006G030200--Sobic009G210400 Sobic002G016400 Sobic002G016400 Sobic006G030200--Sobic002G016400 Sobic005G231300--Sobic001G514300 Sobic005G231300--Sobic003G083600 Sobic009G079900 Sobic009G079900 Sobic005G231300--Sobic009G079900 Sobic008G099100 Sobic008G099100 Sobic005G231300--Sobic008G099100 Sobic005G231300--Sobic007G208100 Sobic005G231300--Sobic006G030200 Sobic001G314000 Sobic001G314000 Sobic005G231300--Sobic001G314000 Sobic005G231300--Sobic008G077300 Sobic003G151900 Sobic003G151900 Sobic005G231300--Sobic003G151900 Sobic001G514300--Sobic005G231300 Sobic001G514300--Sobic008G099100 Sobic001G514300--Sobic003G083600 Sobic001G514300--Sobic001G314000 Sobic001G514300--Sobic009G079900 Sobic001G514300--Sobic008G077300 Sobic001G514300--Sobic008G135300 Sobic001G514300--Sobic003G151900 Sobic003G269100 Sobic003G269100 Sobic001G514300--Sobic003G269100 Sobic002G226500--Sobic006G030200 Sobic002G226500--Sobic008G113900 Sobic007G225400 Sobic007G225400 Sobic002G226500--Sobic007G225400 Sobic010G022500 Sobic010G022500 Sobic002G226500--Sobic010G022500 Sobic002G278200 Sobic002G278200 Sobic002G226500--Sobic002G278200 Sobic006G149300 Sobic006G149300 Sobic002G226500--Sobic006G149300 Sobic002G226500--Sobic006G119000 Sobic003G052900 Sobic003G052900 Sobic002G226500--Sobic003G052900 Sobic004G030300 Sobic004G030300 Sobic002G226500--Sobic004G030300 Sobic008G114000--Sobic002G016400 Sobic008G114000--Sobic001G264400 Sobic008G114000--Sobic008G113900 Sobic008G114000--Sobic007G208100 Sobic008G114000--Sobic003G269100 Sobic004G297950 Sobic004G297950 Sobic008G114000--Sobic004G297950 Sobic001G382700 Sobic001G382700 Sobic008G114000--Sobic001G382700 Sobic001G099600 Sobic001G099600 Sobic008G114000--Sobic001G099600 Sobic009G061400 Sobic009G061400 Sobic008G114000--Sobic009G061400 Sobic008G135300--Sobic003G183300 Sobic001G455100 Sobic001G455100 Sobic008G135300--Sobic001G455100 Sobic008G135300--Sobic008G099100 Sobic003G121000 Sobic003G121000 Sobic008G135300--Sobic003G121000 Sobic006G201000 Sobic006G201000 Sobic008G135300--Sobic006G201000 Sobic001G522700 Sobic001G522700 Sobic008G135300--Sobic001G522700 Sobic007G154200 Sobic007G154200 Sobic008G135300--Sobic007G154200 Sobic006G003100 Sobic006G003100 Sobic008G135300--Sobic006G003100 Sobic008G102800 Sobic008G102800 Sobic008G135300--Sobic008G102800 Sobic007G208100--Sobic005G231300 Sobic007G208100--Sobic002G016400 Sobic003G296500 Sobic003G296500 Sobic007G208100--Sobic003G296500 Sobic007G208100--Sobic006G149300 Sobic002G034301 Sobic002G034301 Sobic007G208100--Sobic002G034301 Sobic003G420100 Sobic003G420100 Sobic007G208100--Sobic003G420100 Sobic010G104400 Sobic010G104400 Sobic007G208100--Sobic010G104400 Sobic003G247600 Sobic003G247600 Sobic007G208100--Sobic003G247600 Sobic007G208100--Sobic001G514300 Sobic003G083600--Sobic005G231300 Sobic003G083600--Sobic001G514300 Sobic003G083600--Sobic009G079900 Sobic003G083600--Sobic008G099100 Sobic002G029600 Sobic002G029600 Sobic003G083600--Sobic002G029600 Sobic001G169400 Sobic001G169400 Sobic003G083600--Sobic001G169400 Sobic003G382200 Sobic003G382200 Sobic003G083600--Sobic003G382200 Sobic001G274400 Sobic001G274400 Sobic003G083600--Sobic001G274400 Sobic008G014700 Sobic008G014700 Sobic003G083600--Sobic008G014700 Sobic004G271800 Sobic004G271800 Sobic003G183300--Sobic004G271800 Sobic002G146000 Sobic002G146000 Sobic003G183300--Sobic002G146000 Sobic003G000100 Sobic003G000100 Sobic003G183300--Sobic003G000100 Sobic010G028100 Sobic010G028100 Sobic003G183300--Sobic010G028100 Sobic003G183300--Sobic006G003100 Sobic006G092700 Sobic006G092700 Sobic003G183300--Sobic006G092700 Sobic006G135300 Sobic006G135300 Sobic003G183300--Sobic006G135300 Sobic003G183300--Sobic008G135300 Sobic010G070400 Sobic010G070400 Sobic003G183300--Sobic010G070400
Octagon: transcription factors


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