Gene annotation
Transcriptome id Sobic.010G022500.1
Synonym Sb10g002130
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
glycosyl hydrolases family 17, putative, expressed
UniProt A0A194YHW9 , Q5NKS6
Pfam PF00332
Panther DB PTHR32227 PTHR32227:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT2G27500 : Glycosyl hydrolase superfamily protein
RAP-DB (Rice) LOC_Os06g04080.1 : glycosyl hydrolases family 17, putative, expressed
MaizeGDB (Corn) Zm00025a041404
Brachypodium -
Barley HORVU7Hr1G012550.4 , HORVU7Hr1G012550.1 , HORVU7Hr1G012550.2 , HORVU7Hr1G012550.3
Wheat TraesCS7D02G065400 , TraesCS7A02G069700 , TraesCSU02G153100 , TraesCS1A02G046000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G226500 "SG1(Ortholog in rice:Nakagawa et al., 2012)"(PubMedID : 31659856)@expressed protein -
2 Sobic.009G221800 reticulon domain containing protein, putative, expressed -
3 Sobic.001G264400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hsp20/alpha crystallin family protein, putative, expressed -
4 Sobic.008G113900 AGAP002737-PA, putative, expressed -
5 Sobic.003G121000 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.001G264300 hsp20/alpha crystallin family protein, putative, expressed -
7 Sobic.003G321400 plastocyanin-like domain containing protein, putative, expressed -
8 Sobic.003G115200 expressed protein -
9 Sobic.009G130300 AWPM-19-like membrane family protein, putative, expressed -
10 Sobic.004G050700 plastocyanin-like domain containing protein, putative, expressed -
11 Sobic.006G119000 X8 domain containing protein, expressed -
12 Sobic.001G295800 expressed protein -
13 Sobic.006G030200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
14 Sobic.003G231600 CBS domain containing membrane protein, putative, expressed -
15 Sobic.010G047600 plant protein of unknown function domain containing protein, expressed -
16 Sobic.003G307400 EF hand family protein, putative, expressed K13448: calcium-binding protein CML
17 Sobic.004G170800 serine-aspartate repeat-containing protein I precursor, putative, expressed -
18 Sobic.007G225400 phosphate-induced protein 1 conserved region domain containing protein, expressed -
19 Sobic.005G047100 actin, putative, expressed K10355: actin, other eukaryote
20 Sobic.003G052900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@-(PubMedID : 23108465)@LOB family(PubMedID : 16399802)@DUF260 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic010G022500 Sobic010G022500 Sobic002G226500 Sobic002G226500 Sobic010G022500--Sobic002G226500 Sobic009G221800 Sobic009G221800 Sobic010G022500--Sobic009G221800 Sobic001G264400 Sobic001G264400 Sobic010G022500--Sobic001G264400 Sobic008G113900 Sobic008G113900 Sobic010G022500--Sobic008G113900 Sobic003G121000 Sobic003G121000 Sobic010G022500--Sobic003G121000 Sobic001G264300 Sobic001G264300 Sobic010G022500--Sobic001G264300 Sobic003G321400 Sobic003G321400 Sobic010G022500--Sobic003G321400 Sobic003G115200 Sobic003G115200 Sobic010G022500--Sobic003G115200 Sobic009G130300 Sobic009G130300 Sobic010G022500--Sobic009G130300 Sobic006G030200 Sobic006G030200 Sobic002G226500--Sobic006G030200 Sobic002G226500--Sobic008G113900 Sobic007G225400 Sobic007G225400 Sobic002G226500--Sobic007G225400 Sobic002G226500--Sobic010G022500 Sobic002G278200 Sobic002G278200 Sobic002G226500--Sobic002G278200 Sobic006G149300 Sobic006G149300 Sobic002G226500--Sobic006G149300 Sobic006G119000 Sobic006G119000 Sobic002G226500--Sobic006G119000 Sobic003G052900 Sobic003G052900 Sobic002G226500--Sobic003G052900 Sobic004G030300 Sobic004G030300 Sobic002G226500--Sobic004G030300 Sobic003G078900 Sobic003G078900 Sobic009G221800--Sobic003G078900 Sobic009G221800--Sobic003G321400 Sobic010G047600 Sobic010G047600 Sobic009G221800--Sobic010G047600 Sobic001G261460 Sobic001G261460 Sobic009G221800--Sobic001G261460 Sobic003G000200 Sobic003G000200 Sobic009G221800--Sobic003G000200 Sobic001G514200 Sobic001G514200 Sobic009G221800--Sobic001G514200 Sobic009G221800--Sobic001G264300 Sobic009G221800--Sobic009G130300 Sobic009G221800--Sobic001G264400 Sobic001G265800 Sobic001G265800 Sobic001G264400--Sobic001G265800 Sobic001G264400--Sobic003G321400 Sobic001G264400--Sobic009G221800 Sobic001G264400--Sobic001G264300 Sobic003G269100 Sobic003G269100 Sobic001G264400--Sobic003G269100 Sobic001G099600 Sobic001G099600 Sobic001G264400--Sobic001G099600 Sobic008G077300 Sobic008G077300 Sobic001G264400--Sobic008G077300 Sobic004G170800 Sobic004G170800 Sobic001G264400--Sobic004G170800 Sobic004G156900 Sobic004G156900 Sobic001G264400--Sobic004G156900 Sobic008G113900--Sobic006G030200 Sobic005G231300 Sobic005G231300 Sobic008G113900--Sobic005G231300 Sobic001G514300 Sobic001G514300 Sobic008G113900--Sobic001G514300 Sobic008G113900--Sobic002G226500 Sobic008G114000 Sobic008G114000 Sobic008G113900--Sobic008G114000 Sobic008G135300 Sobic008G135300 Sobic008G113900--Sobic008G135300 Sobic007G208100 Sobic007G208100 Sobic008G113900--Sobic007G208100 Sobic003G083600 Sobic003G083600 Sobic008G113900--Sobic003G083600 Sobic003G183300 Sobic003G183300 Sobic008G113900--Sobic003G183300 Sobic002G154600 Sobic002G154600 Sobic003G121000--Sobic002G154600 Sobic003G121000--Sobic001G514200 Sobic003G121000--Sobic008G135300 Sobic003G121100 Sobic003G121100 Sobic003G121000--Sobic003G121100 Sobic003G121000--Sobic003G183300 Sobic003G408900 Sobic003G408900 Sobic003G121000--Sobic003G408900 Sobic003G121000--Sobic010G047600 Sobic003G121000--Sobic001G261460 Sobic007G090460 Sobic007G090460 Sobic003G121000--Sobic007G090460 Sobic001G264300--Sobic009G221800 Sobic001G264300--Sobic003G321400 Sobic001G264300--Sobic010G047600 Sobic001G264300--Sobic001G264400 Sobic004G050700 Sobic004G050700 Sobic001G264300--Sobic004G050700 Sobic001G264300--Sobic003G078900 Sobic001G264300--Sobic001G514200 Sobic001G264300--Sobic004G170800 Sobic001G264300--Sobic001G261460 Sobic003G321400--Sobic003G269100 Sobic003G321400--Sobic003G115200 Sobic003G321400--Sobic009G221800 Sobic003G321400--Sobic010G047600 Sobic003G321400--Sobic003G000200 Sobic003G321400--Sobic003G078900 Sobic003G321400--Sobic001G261460 Sobic003G321400--Sobic001G264400 Sobic003G321400--Sobic001G099600 Sobic003G115200--Sobic003G321400 Sobic003G115200--Sobic003G000200 Sobic003G115200--Sobic003G269100 Sobic003G115200--Sobic001G261460 Sobic003G115200--Sobic010G047600 Sobic003G115200--Sobic009G221800 Sobic010G014400 Sobic010G014400 Sobic003G115200--Sobic010G014400 Sobic003G115200--Sobic009G130300 Sobic003G115200--Sobic001G514200 Sobic009G130300--Sobic003G000200 Sobic009G130300--Sobic009G221800 Sobic009G130300--Sobic003G078900 Sobic001G310300 Sobic001G310300 Sobic009G130300--Sobic001G310300 Sobic009G130300--Sobic003G115200 Sobic009G130300--Sobic001G514200 Sobic009G130300--Sobic003G321400 Sobic009G130300--Sobic001G261460 Sobic009G130300--Sobic010G047600
Octagon: transcription factors


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