Gene annotation
| Transcriptome id | Sobic.006G149300.2,Sobic.006G149300.3,Sobic.006G149300.4,Sobic.006G149300.6,Sobic.006G149300.5,Sobic.006G149300.7 |
|---|---|
| Synonym | LOG1, Sb06g022780, ATLOG1 |
| Functional annotation | possible lysine decarboxylase domain containing protein, expressed |
| UniProt | C6JRW4 , C5YCE0 , A0A1Z5RE20 |
| Pfam | PF03641 |
| Panther DB | PTHR31223 PTHR31223:SF17 |
| NCBI CDD | - |
| KEGG Orthology | K06966; pyrimidine/purine-5'-nucleotide nucleosidase |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G28305 : Putative lysine decarboxylase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os04g43840.1 : possible lysine decarboxylase domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a056519 , Zm00025a010649 |
| Brachypodium | KQJ83621 , KQK00419 |
| Barley | HORVU2Hr1G089620.9 , HORVU2Hr1G089620.8 , HORVU2Hr1G089620.3 , HORVU2Hr1G089620.2 , HORVU2Hr1G089620.1 , HORVU2Hr1G089620.7 , HORVU2Hr1G089620.6 , HORVU2Hr1G089620.5 , HORVU2Hr1G089620.13 , HORVU2Hr1G089620.12 , HORVU2Hr1G089620.11 , HORVU2Hr1G089620.10 |
| Wheat | TraesCS2D02G376900 , TraesCS2A02G380600 , TraesCS2B02G397600 , TraesCS2B02G397600 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G016400 | monocopper oxidase, putative, expressed | - |
| 2 | Sobic.007G208100 | heavy metal-associated domain containing protein, expressed | - |
| 3 | Sobic.010G104400 | cysteine-rich repeat secretory protein precursor, putative, expressed | - |
| 4 | Sobic.005G231300 | thaumatin, putative, expressed | - |
| 5 | Sobic.005G098400 | "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@OsIAA27 - Auxin-responsive Aux/IAA gene family member, expressed | K14484: auxin-responsive protein IAA |
| 6 | Sobic.002G226500 | "SG1(Ortholog in rice:Nakagawa et al., 2012)"(PubMedID : 31659856)@expressed protein | - |
| 7 | Sobic.002G278200 | thaumatin, putative, expressed | - |
| 8 | Sobic.007G120301 | - | - |
| 9 | Sobic.007G018100 | no apical meristem protein, putative, expressed | - |
| 10 | Sobic.001G305300 | ATROPGEF7/ROPGEF7, putative, expressed | - |
| 11 | Sobic.007G050500 | MYB family transcription factor, putative, expressed | - |
| 12 | Sobic.008G113900 | AGAP002737-PA, putative, expressed | - |
| 13 | Sobic.001G382700 | inactive receptor kinase At2g26730 precursor, putative, expressed | - |
| 14 | Sobic.005G010300 | expressed protein | - |
| 15 | Sobic.007G225400 | phosphate-induced protein 1 conserved region domain containing protein, expressed | - |
| 16 | Sobic.004G287700 | expressed protein | - |
| 17 | Sobic.003G418300 | protein kinase, putative, expressed | K04730: interleukin-1 receptor-associated kinase 1 |
| 18 | Sobic.006G030200 | MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 19 | Sobic.001G514300 | Glutathione S-transferase("PubMedID : 26759170,PubMedID : 24597475")@glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 20 | Sobic.003G132500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@subtilisin-like protease, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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