Gene annotation
Transcriptome id Sobic.001G305300.1
Synonym ROPGEF3, ATROPGEF3, Sb01g029730
Functional annotation ATROPGEF7/ROPGEF7, putative, expressed
UniProt C5WSK6
Pfam PF03759
Panther DB PTHR33101 PTHR33101:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005089; Rho guanyl-nucleotide exchange factor activity


Orthologs (automatic annotation)
TAIR AT4G00460 : RHO guanyl-nucleotide exchange factor 3
RAP-DB (Rice) LOC_Os10g40270.1 : ATROPGEF7/ROPGEF7, putative, expressed
MaizeGDB (Corn) Zm00025a010245 , Zm00025a003277 , Zm00025a047994
Brachypodium KQJ97727 , KQJ97684 , KQJ97725 , PNT71128 , KQJ97726 , PNT71127 , KQK05954 , KQJ91296
Barley HORVU2Hr1G096430.6 , HORVU2Hr1G096430.4 , HORVU2Hr1G096430.5 , HORVU2Hr1G096430.3 , HORVU1Hr1G053350.9 , HORVU1Hr1G053350.8 , HORVU1Hr1G053350.3 , HORVU1Hr1G053350.2 , HORVU1Hr1G053350.1 , HORVU1Hr1G053350.7 , HORVU1Hr1G053350.6 , HORVU1Hr1G053350.5 , HORVU1Hr1G053350.4 , HORVU1Hr1G072910.10 , HORVU1Hr1G072910.11 , HORVU1Hr1G072910.14 , HORVU2Hr1G096430.18 , HORVU2Hr1G096430.19 , HORVU2Hr1G096430.14 , HORVU2Hr1G096430.15 , HORVU2Hr1G096430.16 , HORVU2Hr1G096430.17 , HORVU2Hr1G096430.10 , HORVU2Hr1G096430.11 , HORVU2Hr1G096430.12 , HORVU2Hr1G096430.13 , HORVU1Hr1G072910.1 , HORVU1Hr1G072910.3 , HORVU1Hr1G072910.6 , HORVU1Hr1G072910.7 , HORVU1Hr1G072910.8 , HORVU1Hr1G072910.2 , HORVU1Hr1G072910.9 , HORVU6Hr1G092860.5 , HORVU6Hr1G092860.4 , HORVU6Hr1G092860.7 , HORVU6Hr1G092860.6 , HORVU6Hr1G092860.1 , HORVU6Hr1G092860.3 , HORVU6Hr1G092860.2
Wheat TraesCS6D02G388300 , TraesCS1A02G280900 , TraesCS1D02G211900 , TraesCS2A02G408100 , TraesCS1D02G280000 , TraesCS1A02G208700 , TraesCS6B02G449200 , TraesCS2D02G405400 , TraesCS6A02G405000 , TraesCS1A02G280900 , TraesCS1B02G222700 , TraesCS2B02G426300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G098400 "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@OsIAA27 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
2 Sobic.002G016400 monocopper oxidase, putative, expressed -
3 Sobic.007G120301 - -
4 Sobic.001G345200 OsFBX94 - F-box domain containing protein, expressed -
5 Sobic.005G121700 expressed protein -
6 Sobic.007G050500 MYB family transcription factor, putative, expressed -
7 Sobic.005G010300 expressed protein -
8 Sobic.007G225400 phosphate-induced protein 1 conserved region domain containing protein, expressed -
9 Sobic.001G310200 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
10 Sobic.006G149300 possible lysine decarboxylase domain containing protein, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
11 Sobic.003G418300 protein kinase, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
12 Sobic.001G268550 - -
13 Sobic.008G077300 expressed protein -
14 Sobic.003G116100 pectinesterase, putative, expressed K01051: pectinesterase
15 Sobic.005G091000 receptor protein kinase CLAVATA1 precursor, putative, expressed -
16 Sobic.006G030200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.004G227900 expansin precursor, putative, expressed -
18 Sobic.008G114000 expressed protein -
19 Sobic.001G110100 expressed protein -
20 Sobic.003G338200 receptor-like protein kinase precursor, putative, expressed -


Gene co-expression network
sample Sobic001G305300 Sobic001G305300 Sobic005G098400 Sobic005G098400 Sobic001G305300--Sobic005G098400 Sobic002G016400 Sobic002G016400 Sobic001G305300--Sobic002G016400 Sobic007G120301 Sobic007G120301 Sobic001G305300--Sobic007G120301 Sobic001G345200 Sobic001G345200 Sobic001G305300--Sobic001G345200 Sobic005G121700 Sobic005G121700 Sobic001G305300--Sobic005G121700 Sobic007G050500 Sobic007G050500 Sobic001G305300--Sobic007G050500 Sobic005G010300 Sobic005G010300 Sobic001G305300--Sobic005G010300 Sobic007G225400 Sobic007G225400 Sobic001G305300--Sobic007G225400 Sobic001G310200 Sobic001G310200 Sobic001G305300--Sobic001G310200 Sobic005G098400--Sobic002G016400 Sobic005G098400--Sobic001G305300 Sobic005G098400--Sobic001G345200 Sobic003G418300 Sobic003G418300 Sobic005G098400--Sobic003G418300 Sobic005G098400--Sobic007G050500 Sobic005G098400--Sobic007G225400 Sobic005G091000 Sobic005G091000 Sobic005G098400--Sobic005G091000 Sobic005G098400--Sobic005G121700 Sobic008G170400 Sobic008G170400 Sobic005G098400--Sobic008G170400 Sobic002G016400--Sobic005G098400 Sobic002G016400--Sobic003G418300 Sobic002G016400--Sobic007G050500 Sobic002G016400--Sobic001G305300 Sobic002G016400--Sobic001G345200 Sobic007G208100 Sobic007G208100 Sobic002G016400--Sobic007G208100 Sobic006G149300 Sobic006G149300 Sobic002G016400--Sobic006G149300 Sobic001G382700 Sobic001G382700 Sobic002G016400--Sobic001G382700 Sobic002G016400--Sobic008G170400 Sobic007G120301--Sobic001G305300 Sobic007G120301--Sobic002G016400 Sobic007G120301--Sobic005G098400 Sobic007G120301--Sobic007G050500 Sobic007G041600 Sobic007G041600 Sobic007G120301--Sobic007G041600 Sobic005G231300 Sobic005G231300 Sobic007G120301--Sobic005G231300 Sobic007G120301--Sobic006G149300 Sobic007G120301--Sobic007G208100 Sobic002G283500 Sobic002G283500 Sobic007G120301--Sobic002G283500 Sobic001G345200--Sobic005G098400 Sobic003G338200 Sobic003G338200 Sobic001G345200--Sobic003G338200 Sobic001G345200--Sobic002G016400 Sobic001G267100 Sobic001G267100 Sobic001G345200--Sobic001G267100 Sobic003G116100 Sobic003G116100 Sobic001G345200--Sobic003G116100 Sobic001G345200--Sobic005G091000 Sobic001G345200--Sobic001G305300 Sobic008G187400 Sobic008G187400 Sobic001G345200--Sobic008G187400 Sobic003G277200 Sobic003G277200 Sobic001G345200--Sobic003G277200 Sobic001G514400 Sobic001G514400 Sobic005G121700--Sobic001G514400 Sobic005G121700--Sobic005G098400 Sobic008G077300 Sobic008G077300 Sobic005G121700--Sobic008G077300 Sobic009G021700 Sobic009G021700 Sobic005G121700--Sobic009G021700 Sobic005G121700--Sobic001G305300 Sobic005G121700--Sobic007G225400 Sobic002G034301 Sobic002G034301 Sobic005G121700--Sobic002G034301 Sobic005G121700--Sobic007G208100 Sobic005G121700--Sobic002G016400 Sobic007G050500--Sobic002G016400 Sobic007G050500--Sobic005G098400 Sobic007G050500--Sobic001G267100 Sobic002G278200 Sobic002G278200 Sobic007G050500--Sobic002G278200 Sobic007G050500--Sobic001G305300 Sobic007G050500--Sobic007G120301 Sobic005G025900 Sobic005G025900 Sobic007G050500--Sobic005G025900 Sobic007G050500--Sobic001G345200 Sobic007G111700 Sobic007G111700 Sobic007G050500--Sobic007G111700 Sobic005G010300--Sobic002G016400 Sobic005G010300--Sobic001G305300 Sobic005G010300--Sobic005G098400 Sobic005G010300--Sobic006G149300 Sobic009G061400 Sobic009G061400 Sobic005G010300--Sobic009G061400 Sobic005G010300--Sobic007G050500 Sobic005G010300--Sobic007G225400 Sobic001G514300 Sobic001G514300 Sobic005G010300--Sobic001G514300 Sobic005G010300--Sobic005G231300 Sobic004G170900 Sobic004G170900 Sobic007G225400--Sobic004G170900 Sobic007G225400--Sobic005G098400 Sobic010G216600 Sobic010G216600 Sobic007G225400--Sobic010G216600 Sobic005G047100 Sobic005G047100 Sobic007G225400--Sobic005G047100 Sobic002G226500 Sobic002G226500 Sobic007G225400--Sobic002G226500 Sobic007G225400--Sobic005G121700 Sobic007G225400--Sobic002G016400 Sobic007G225400--Sobic001G305300 Sobic001G264400 Sobic001G264400 Sobic007G225400--Sobic001G264400 Sobic001G110100 Sobic001G110100 Sobic001G310200--Sobic001G110100 Sobic002G129100 Sobic002G129100 Sobic001G310200--Sobic002G129100 Sobic004G118100 Sobic004G118100 Sobic001G310200--Sobic004G118100 Sobic010G062200 Sobic010G062200 Sobic001G310200--Sobic010G062200 Sobic004G227900 Sobic004G227900 Sobic001G310200--Sobic004G227900 Sobic008G004200 Sobic008G004200 Sobic001G310200--Sobic008G004200 Sobic010G053300 Sobic010G053300 Sobic001G310200--Sobic010G053300 Sobic005G054800 Sobic005G054800 Sobic001G310200--Sobic005G054800 Sobic006G137000 Sobic006G137000 Sobic001G310200--Sobic006G137000
Octagon: transcription factors


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