Gene annotation
Transcriptome id Sobic.007G183700.1
Synonym Sb07g025380
Functional annotation la domain containing protein, expressed
UniProt C5YH87
Pfam PF05383
Panther DB PTHR22792 PTHR22792:SF54
NCBI CDD KOG1855; Predicted RNA-binding protein
KEGG Orthology K15191; La-related protein 7
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G43970 : RNA-binding protein
RAP-DB (Rice) LOC_Os08g42980.1 : la domain containing protein, expressed
MaizeGDB (Corn) Zm00025a057017 , Zm00025a005348
Brachypodium -
Barley HORVU7Hr1G056460.1
Wheat TraesCS7D02G269000 , TraesCS7B02G166700 , TraesCS7A02G265700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G366500 transport protein particle component, Bet3, domain containing protein, expressed -
2 Sobic.003G153700 expressed protein -
3 Sobic.001G466700 peptidyl-prolyl cis-trans isomerase, putative, expressed K10598: PPIL2, CYC4, peptidyl-prolyl cis-trans isomerase-like 2
4 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
5 Sobic.005G074500 VHS and GAT domain containing protein, expressed -
6 Sobic.001G000200 TBC domain containing protein, expressed -
7 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
8 Sobic.004G033600 expressed protein -
9 Sobic.002G092300 WD domain, G-beta repeat domain containing protein, expressed -
10 Sobic.003G436300 expressed protein -
11 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
12 Sobic.004G105500 expressed protein -
13 Sobic.006G182200 WD domain, G-beta repeat domain containing protein, expressed -
14 Sobic.002G131900 expressed protein -
15 Sobic.004G250300 eukaryotic aspartyl protease domain containing protein, expressed -
16 Sobic.001G515100 ATP binding protein, putative, expressed K06883: uncharacterized protein
17 Sobic.010G090900 membrane-anchored ubiquitin-fold protein, putative, expressed -
18 Sobic.001G051200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
K08515: vesicle-associated membrane protein 7
19 Sobic.010G079900 AT hook-containing DNA-binding protein, putative, expressed -
20 Sobic.007G179800 TBC domain containing protein, expressed -


Gene co-expression network
sample Sobic007G183700 Sobic007G183700 Sobic003G366500 Sobic003G366500 Sobic007G183700--Sobic003G366500 Sobic003G153700 Sobic003G153700 Sobic007G183700--Sobic003G153700 Sobic001G466700 Sobic001G466700 Sobic007G183700--Sobic001G466700 Sobic006G034000 Sobic006G034000 Sobic007G183700--Sobic006G034000 Sobic005G074500 Sobic005G074500 Sobic007G183700--Sobic005G074500 Sobic001G000200 Sobic001G000200 Sobic007G183700--Sobic001G000200 Sobic003G312200 Sobic003G312200 Sobic007G183700--Sobic003G312200 Sobic004G033600 Sobic004G033600 Sobic007G183700--Sobic004G033600 Sobic002G092300 Sobic002G092300 Sobic007G183700--Sobic002G092300 Sobic003G366500--Sobic003G153700 Sobic001G221500 Sobic001G221500 Sobic003G366500--Sobic001G221500 Sobic003G366500--Sobic001G466700 Sobic004G274400 Sobic004G274400 Sobic003G366500--Sobic004G274400 Sobic001G260400 Sobic001G260400 Sobic003G366500--Sobic001G260400 Sobic003G366500--Sobic007G183700 Sobic006G249700 Sobic006G249700 Sobic003G366500--Sobic006G249700 Sobic007G026300 Sobic007G026300 Sobic003G366500--Sobic007G026300 Sobic003G181800 Sobic003G181800 Sobic003G366500--Sobic003G181800 Sobic003G015900 Sobic003G015900 Sobic003G153700--Sobic003G015900 Sobic003G153700--Sobic003G366500 Sobic003G153700--Sobic003G312200 Sobic001G051200 Sobic001G051200 Sobic003G153700--Sobic001G051200 Sobic004G059000 Sobic004G059000 Sobic003G153700--Sobic004G059000 Sobic002G352600 Sobic002G352600 Sobic003G153700--Sobic002G352600 Sobic009G228700 Sobic009G228700 Sobic003G153700--Sobic009G228700 Sobic001G376800 Sobic001G376800 Sobic003G153700--Sobic001G376800 Sobic002G418700 Sobic002G418700 Sobic003G153700--Sobic002G418700 Sobic006G252700 Sobic006G252700 Sobic001G466700--Sobic006G252700 Sobic003G081000 Sobic003G081000 Sobic001G466700--Sobic003G081000 Sobic001G143500 Sobic001G143500 Sobic001G466700--Sobic001G143500 Sobic002G388200 Sobic002G388200 Sobic001G466700--Sobic002G388200 Sobic001G371200 Sobic001G371200 Sobic001G466700--Sobic001G371200 Sobic004G021100 Sobic004G021100 Sobic001G466700--Sobic004G021100 Sobic007G119200 Sobic007G119200 Sobic001G466700--Sobic007G119200 Sobic009G056800 Sobic009G056800 Sobic001G466700--Sobic009G056800 Sobic007G118200 Sobic007G118200 Sobic001G466700--Sobic007G118200 Sobic006G034000--Sobic003G312200 Sobic001G323000 Sobic001G323000 Sobic006G034000--Sobic001G323000 Sobic003G436300 Sobic003G436300 Sobic006G034000--Sobic003G436300 Sobic006G148200 Sobic006G148200 Sobic006G034000--Sobic006G148200 Sobic001G180900 Sobic001G180900 Sobic006G034000--Sobic001G180900 Sobic010G130000 Sobic010G130000 Sobic006G034000--Sobic010G130000 Sobic001G091300 Sobic001G091300 Sobic006G034000--Sobic001G091300 Sobic008G110600 Sobic008G110600 Sobic006G034000--Sobic008G110600 Sobic006G034000--Sobic009G228700 Sobic008G103300 Sobic008G103300 Sobic005G074500--Sobic008G103300 Sobic005G074500--Sobic003G312200 Sobic001G206900 Sobic001G206900 Sobic005G074500--Sobic001G206900 Sobic001G449900 Sobic001G449900 Sobic005G074500--Sobic001G449900 Sobic003G337300 Sobic003G337300 Sobic005G074500--Sobic003G337300 Sobic001G426100 Sobic001G426100 Sobic005G074500--Sobic001G426100 Sobic004G323700 Sobic004G323700 Sobic005G074500--Sobic004G323700 Sobic001G431000 Sobic001G431000 Sobic005G074500--Sobic001G431000 Sobic010G020300 Sobic010G020300 Sobic005G074500--Sobic010G020300 Sobic009G199200 Sobic009G199200 Sobic001G000200--Sobic009G199200 Sobic010G205800 Sobic010G205800 Sobic001G000200--Sobic010G205800 Sobic006G237400 Sobic006G237400 Sobic001G000200--Sobic006G237400 Sobic001G253700 Sobic001G253700 Sobic001G000200--Sobic001G253700 Sobic008G004600 Sobic008G004600 Sobic001G000200--Sobic008G004600 Sobic003G233600 Sobic003G233600 Sobic001G000200--Sobic003G233600 Sobic001G291000 Sobic001G291000 Sobic001G000200--Sobic001G291000 Sobic001G079200 Sobic001G079200 Sobic001G000200--Sobic001G079200 Sobic001G071400 Sobic001G071400 Sobic001G000200--Sobic001G071400 Sobic003G312200--Sobic006G034000 Sobic003G312200--Sobic001G091300 Sobic003G312200--Sobic001G323000 Sobic003G312200--Sobic001G206900 Sobic003G312200--Sobic009G228700 Sobic001G261436 Sobic001G261436 Sobic003G312200--Sobic001G261436 Sobic001G085100 Sobic001G085100 Sobic003G312200--Sobic001G085100 Sobic003G312200--Sobic010G130000 Sobic003G312200--Sobic005G074500 Sobic007G039400 Sobic007G039400 Sobic004G033600--Sobic007G039400 Sobic001G493200 Sobic001G493200 Sobic004G033600--Sobic001G493200 Sobic001G081000 Sobic001G081000 Sobic004G033600--Sobic001G081000 Sobic006G199200 Sobic006G199200 Sobic004G033600--Sobic006G199200 Sobic001G008200 Sobic001G008200 Sobic004G033600--Sobic001G008200 Sobic002G425700 Sobic002G425700 Sobic004G033600--Sobic002G425700 Sobic009G056200 Sobic009G056200 Sobic004G033600--Sobic009G056200 Sobic010G079900 Sobic010G079900 Sobic004G033600--Sobic010G079900 Sobic004G033600--Sobic001G000200 Sobic010G279700 Sobic010G279700 Sobic002G092300--Sobic010G279700 Sobic004G250300 Sobic004G250300 Sobic002G092300--Sobic004G250300 Sobic004G021200 Sobic004G021200 Sobic002G092300--Sobic004G021200 Sobic007G115200 Sobic007G115200 Sobic002G092300--Sobic007G115200 Sobic008G092300 Sobic008G092300 Sobic002G092300--Sobic008G092300 Sobic001G281600 Sobic001G281600 Sobic002G092300--Sobic001G281600 Sobic002G092300--Sobic001G000200 Sobic003G250500 Sobic003G250500 Sobic002G092300--Sobic003G250500 Sobic001G016000 Sobic001G016000 Sobic002G092300--Sobic001G016000
Octagon: transcription factors


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