Gene annotation
Transcriptome id Sobic.005G017500.2
Synonym SGR1, Sb05g001500, SCR
Functional annotation GRAS family transcription factor domain containing protein, expressed
UniProt A0A1Z5RG85
Pfam PF03514
Panther DB PTHR31636 PTHR31636:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G54220 : GRAS family transcription factor
RAP-DB (Rice) LOC_Os12g02870.1 : GRAS family transcription factor domain containing protein, expressed
MaizeGDB (Corn) Zm00025a013152 , Zm00025a051287 , Zm00025a033336
Brachypodium PNT65541
Barley HORVU5Hr1G045920.3 , HORVU5Hr1G045920.2 , HORVU5Hr1G045920.1 , HORVU5Hr1G045920.5 , HORVU5Hr1G045920.4 , HORVU4Hr1G024020.2 , HORVU4Hr1G024020.1 , HORVU4Hr1G024030.1 , HORVU4Hr1G024030.2 , HORVU0Hr1G003230.1 , HORVU0Hr1G003230.2
Wheat TraesCS5B02G143100 , TraesCS4A02G191300 , TraesCS4D02G122000 , TraesCS5D02G148000 , TraesCS4B02G124000 , TraesCS5A02G144000
Populus -


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cDNA sequences
Sobic.005G017500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G052300 plant protein of unknown function DUF869 domain containing protein, expressed -
2 Sobic.004G269100 ATROPGEF7/ROPGEF7, putative, expressed -
3 Sobic.001G461800 zinc finger family protein, putative, expressed -
4 Sobic.003G250000 peroxidase family protein, expressed K00430: peroxidase
5 Sobic.003G102700 exostosin family protein, putative, expressed -
6 Sobic.002G259200 POEI18 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
7 Sobic.002G286700 lysM domain-containing GPI-anchored protein precursor, putative, expressed -
8 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
9 Sobic.003G104100 expressed protein -
10 Sobic.006G084300 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
11 Sobic.003G024000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide-N4-asparagine amidase A, putative, expressed -
12 Sobic.003G223000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
13 Sobic.008G059900 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
14 Sobic.005G102800 OsSCP48 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
15 Sobic.009G045300 OsFBL21 - F-box domain and LRR containing protein, expressed K14485: transport inhibitor response 1
16 Sobic.006G016700 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
17 Sobic.009G188900 acyltransferase, putative, expressed K13513: LCLAT1, lysocardiolipin and lysophospholipid acyltransferase
18 Sobic.001G425700 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
19 Sobic.008G090000 oxysterol-binding protein, putative, expressed -
20 Sobic.009G012600 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1


Gene co-expression network
sample Sobic005G017500 Sobic005G017500 Sobic008G052300 Sobic008G052300 Sobic005G017500--Sobic008G052300 Sobic004G269100 Sobic004G269100 Sobic005G017500--Sobic004G269100 Sobic001G461800 Sobic001G461800 Sobic005G017500--Sobic001G461800 Sobic003G250000 Sobic003G250000 Sobic005G017500--Sobic003G250000 Sobic003G102700 Sobic003G102700 Sobic005G017500--Sobic003G102700 Sobic002G259200 Sobic002G259200 Sobic005G017500--Sobic002G259200 Sobic002G286700 Sobic002G286700 Sobic005G017500--Sobic002G286700 Sobic001G199500 Sobic001G199500 Sobic005G017500--Sobic001G199500 Sobic003G104100 Sobic003G104100 Sobic005G017500--Sobic003G104100 Sobic008G052300--Sobic004G269100 Sobic008G052300--Sobic003G104100 Sobic009G127800 Sobic009G127800 Sobic008G052300--Sobic009G127800 Sobic006G221300 Sobic006G221300 Sobic008G052300--Sobic006G221300 Sobic005G163400 Sobic005G163400 Sobic008G052300--Sobic005G163400 Sobic008G052300--Sobic002G259200 Sobic006G016700 Sobic006G016700 Sobic008G052300--Sobic006G016700 Sobic005G153000 Sobic005G153000 Sobic008G052300--Sobic005G153000 Sobic009G225500 Sobic009G225500 Sobic008G052300--Sobic009G225500 Sobic004G269100--Sobic008G052300 Sobic004G269100--Sobic002G259200 Sobic003G251700 Sobic003G251700 Sobic004G269100--Sobic003G251700 Sobic005G092700 Sobic005G092700 Sobic004G269100--Sobic005G092700 Sobic004G269100--Sobic005G153000 Sobic004G269100--Sobic001G461800 Sobic004G269100--Sobic003G250000 Sobic003G222800 Sobic003G222800 Sobic004G269100--Sobic003G222800 Sobic003G055800 Sobic003G055800 Sobic004G269100--Sobic003G055800 Sobic001G461800--Sobic003G250000 Sobic004G164700 Sobic004G164700 Sobic001G461800--Sobic004G164700 Sobic003G291000 Sobic003G291000 Sobic001G461800--Sobic003G291000 Sobic001G461800--Sobic002G286700 Sobic008G190000 Sobic008G190000 Sobic001G461800--Sobic008G190000 Sobic003G078300 Sobic003G078300 Sobic001G461800--Sobic003G078300 Sobic004G253500 Sobic004G253500 Sobic001G461800--Sobic004G253500 Sobic001G381100 Sobic001G381100 Sobic001G461800--Sobic001G381100 Sobic006G241800 Sobic006G241800 Sobic001G461800--Sobic006G241800 Sobic003G250000--Sobic001G461800 Sobic003G250000--Sobic004G253500 Sobic003G250000--Sobic004G269100 Sobic003G250000--Sobic003G078300 Sobic009G002900 Sobic009G002900 Sobic003G250000--Sobic009G002900 Sobic003G250000--Sobic003G291000 Sobic003G250000--Sobic002G286700 Sobic003G259500 Sobic003G259500 Sobic003G250000--Sobic003G259500 Sobic003G250000--Sobic002G259200 Sobic003G102700--Sobic001G199500 Sobic005G102800 Sobic005G102800 Sobic003G102700--Sobic005G102800 Sobic006G084300 Sobic006G084300 Sobic003G102700--Sobic006G084300 Sobic002G187600 Sobic002G187600 Sobic003G102700--Sobic002G187600 Sobic002G168000 Sobic002G168000 Sobic003G102700--Sobic002G168000 Sobic006G281900 Sobic006G281900 Sobic003G102700--Sobic006G281900 Sobic003G024000 Sobic003G024000 Sobic003G102700--Sobic003G024000 Sobic009G188900 Sobic009G188900 Sobic003G102700--Sobic009G188900 Sobic002G367200 Sobic002G367200 Sobic003G102700--Sobic002G367200 Sobic002G259200--Sobic004G269100 Sobic002G259200--Sobic003G222800 Sobic001G493100 Sobic001G493100 Sobic002G259200--Sobic001G493100 Sobic002G259200--Sobic008G052300 Sobic006G172000 Sobic006G172000 Sobic002G259200--Sobic006G172000 Sobic002G259200--Sobic002G286700 Sobic002G259200--Sobic005G163400 Sobic006G041700 Sobic006G041700 Sobic002G259200--Sobic006G041700 Sobic002G259200--Sobic008G190000 Sobic002G286700--Sobic008G190000 Sobic001G304800 Sobic001G304800 Sobic002G286700--Sobic001G304800 Sobic003G246800 Sobic003G246800 Sobic002G286700--Sobic003G246800 Sobic008G083500 Sobic008G083500 Sobic002G286700--Sobic008G083500 Sobic002G296000 Sobic002G296000 Sobic002G286700--Sobic002G296000 Sobic009G101100 Sobic009G101100 Sobic002G286700--Sobic009G101100 Sobic002G286700--Sobic001G461800 Sobic006G105600 Sobic006G105600 Sobic002G286700--Sobic006G105600 Sobic003G032200 Sobic003G032200 Sobic002G286700--Sobic003G032200 Sobic005G088900 Sobic005G088900 Sobic001G199500--Sobic005G088900 Sobic001G199500--Sobic003G102700 Sobic001G199500--Sobic006G084300 Sobic001G199500--Sobic003G024000 Sobic001G199500--Sobic006G281900 Sobic001G199500--Sobic009G188900 Sobic007G006800 Sobic007G006800 Sobic001G199500--Sobic007G006800 Sobic006G071628 Sobic006G071628 Sobic001G199500--Sobic006G071628 Sobic003G144000 Sobic003G144000 Sobic001G199500--Sobic003G144000 Sobic001G395200 Sobic001G395200 Sobic003G104100--Sobic001G395200 Sobic003G104100--Sobic008G052300 Sobic003G104100--Sobic005G163400 Sobic001G425700 Sobic001G425700 Sobic003G104100--Sobic001G425700 Sobic006G067700 Sobic006G067700 Sobic003G104100--Sobic006G067700 Sobic010G024500 Sobic010G024500 Sobic003G104100--Sobic010G024500 Sobic004G179800 Sobic004G179800 Sobic003G104100--Sobic004G179800 Sobic003G104100--Sobic006G084300 Sobic009G259900 Sobic009G259900 Sobic003G104100--Sobic009G259900
Octagon: transcription factors


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