Gene annotation
Transcriptome id Sobic.002G421900.1
Synonym Sb02g043310, DNA binding with One Finger, CDF2, SbDof8
Functional annotation Homologous to Dof genes in Arabidopsis and rice. (PubMedID : 21161392)
expressed protein
UniProt A0A1W0W7Y2 , R4NEZ9 , G3LI10 , E6PBL5
Pfam PF02701
Panther DB PTHR31089 PTHR31089:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G47500 : cycling DOF factor 3
RAP-DB (Rice) LOC_Os07g48570.1 : expressed protein
MaizeGDB (Corn) Zm00025a049197
Brachypodium -
Barley HORVU2Hr1G017290.1
Wheat TraesCS2D02G100300 , TraesCS2A02G100800 , TraesCS2B02G118000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G403600 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@rhythmically expressed gene 2 protein, putative, expressed -
2 Sobic.008G052900 CBS domain-containing protein, putative, expressed -
3 Sobic.001G512500 expressed protein -
4 Sobic.004G151500 AP2 domain containing protein, expressed -
5 Sobic.003G370700 regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS1-18 - C2H2 zinc finger protein, expressed -
6 Sobic.006G215600 SHR5-receptor-like kinase, putative, expressed -
7 Sobic.001G003200 RNApolymerase sigma-subunit F(PubMedID : 26465154)@RNA polymerase sigma factor, putative, expressed K03086: RNA polymerase primary sigma factor
8 Sobic.006G120500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
9 Sobic.010G067100 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
10 Sobic.007G033800 basic helix-loop-helix DND-binding domain containing protein, expressed -
11 Sobic.001G531500 peroxisomal biogenesis factor 11, putative, expressed -
12 Sobic.001G339500 expressed protein -
13 Sobic.001G072700 expressed protein -
14 Sobic.003G343500 NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed K17871: NADH:ubiquinone reductase (non-electrogenic)
15 Sobic.008G094000 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
16 Sobic.002G339600 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
17 Sobic.001G517700 catalase domain containing protein, expressed K03781: katE, CAT, catB, catalase
18 Sobic.006G173600 serine racemase, putative, expressed K12235: serine racemase
19 Sobic.002G390500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pyruvate dehydrogenase kinase(PubMedID : 27016024)@kinase, putative, expressed K00898: pyruvate dehydrogenase kinase 2/3/4
20 Sobic.004G356400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic002G421900 Sobic002G421900 Sobic002G403600 Sobic002G403600 Sobic002G421900--Sobic002G403600 Sobic008G052900 Sobic008G052900 Sobic002G421900--Sobic008G052900 Sobic001G512500 Sobic001G512500 Sobic002G421900--Sobic001G512500 Sobic004G151500 Sobic004G151500 Sobic002G421900--Sobic004G151500 Sobic003G370700 Sobic003G370700 Sobic002G421900--Sobic003G370700 Sobic006G215600 Sobic006G215600 Sobic002G421900--Sobic006G215600 Sobic001G003200 Sobic001G003200 Sobic002G421900--Sobic001G003200 Sobic006G120500 Sobic006G120500 Sobic002G421900--Sobic006G120500 Sobic010G067100 Sobic010G067100 Sobic002G421900--Sobic010G067100 Sobic001G531500 Sobic001G531500 Sobic002G403600--Sobic001G531500 Sobic004G027600 Sobic004G027600 Sobic002G403600--Sobic004G027600 Sobic006G064100 Sobic006G064100 Sobic002G403600--Sobic006G064100 Sobic001G073900 Sobic001G073900 Sobic002G403600--Sobic001G073900 Sobic004G356400 Sobic004G356400 Sobic002G403600--Sobic004G356400 Sobic003G036200 Sobic003G036200 Sobic002G403600--Sobic003G036200 Sobic002G403600--Sobic006G120500 Sobic005G001700 Sobic005G001700 Sobic002G403600--Sobic005G001700 Sobic010G251700 Sobic010G251700 Sobic002G403600--Sobic010G251700 Sobic009G219100 Sobic009G219100 Sobic008G052900--Sobic009G219100 Sobic004G268300 Sobic004G268300 Sobic008G052900--Sobic004G268300 Sobic002G206300 Sobic002G206300 Sobic008G052900--Sobic002G206300 Sobic009G207900 Sobic009G207900 Sobic008G052900--Sobic009G207900 Sobic009G038701 Sobic009G038701 Sobic008G052900--Sobic009G038701 Sobic001G180200 Sobic001G180200 Sobic008G052900--Sobic001G180200 Sobic008G052900--Sobic010G067100 Sobic001G504400 Sobic001G504400 Sobic008G052900--Sobic001G504400 Sobic006G212800 Sobic006G212800 Sobic008G052900--Sobic006G212800 Sobic004G054400 Sobic004G054400 Sobic001G512500--Sobic004G054400 Sobic001G032700 Sobic001G032700 Sobic001G512500--Sobic001G032700 Sobic001G124800 Sobic001G124800 Sobic001G512500--Sobic001G124800 Sobic003G014300 Sobic003G014300 Sobic001G512500--Sobic003G014300 Sobic004G298900 Sobic004G298900 Sobic001G512500--Sobic004G298900 Sobic003G343500 Sobic003G343500 Sobic001G512500--Sobic003G343500 Sobic010G058200 Sobic010G058200 Sobic001G512500--Sobic010G058200 Sobic004G026500 Sobic004G026500 Sobic001G512500--Sobic004G026500 Sobic003G037300 Sobic003G037300 Sobic001G512500--Sobic003G037300 Sobic004G151500--Sobic004G298900 Sobic004G151500--Sobic004G268300 Sobic004G151500--Sobic003G014300 Sobic004G151500--Sobic003G037300 Sobic004G151500--Sobic008G052900 Sobic009G062400 Sobic009G062400 Sobic004G151500--Sobic009G062400 Sobic006G258700 Sobic006G258700 Sobic004G151500--Sobic006G258700 Sobic006G260800 Sobic006G260800 Sobic004G151500--Sobic006G260800 Sobic001G183000 Sobic001G183000 Sobic004G151500--Sobic001G183000 Sobic006G133900 Sobic006G133900 Sobic003G370700--Sobic006G133900 Sobic001G333800 Sobic001G333800 Sobic003G370700--Sobic001G333800 Sobic002G104100 Sobic002G104100 Sobic003G370700--Sobic002G104100 Sobic004G181600 Sobic004G181600 Sobic003G370700--Sobic004G181600 Sobic003G229300 Sobic003G229300 Sobic003G370700--Sobic003G229300 Sobic003G191700 Sobic003G191700 Sobic003G370700--Sobic003G191700 Sobic009G038900 Sobic009G038900 Sobic003G370700--Sobic009G038900 Sobic005G106600 Sobic005G106600 Sobic003G370700--Sobic005G106600 Sobic007G198300 Sobic007G198300 Sobic003G370700--Sobic007G198300 Sobic006G215600--Sobic004G151500 Sobic001G339500 Sobic001G339500 Sobic006G215600--Sobic001G339500 Sobic002G339600 Sobic002G339600 Sobic006G215600--Sobic002G339600 Sobic006G215600--Sobic002G421900 Sobic003G349200 Sobic003G349200 Sobic006G215600--Sobic003G349200 Sobic003G224100 Sobic003G224100 Sobic006G215600--Sobic003G224100 Sobic006G215600--Sobic003G014300 Sobic006G215600--Sobic006G258700 Sobic010G269400 Sobic010G269400 Sobic006G215600--Sobic010G269400 Sobic009G056700 Sobic009G056700 Sobic001G003200--Sobic009G056700 Sobic007G053800 Sobic007G053800 Sobic001G003200--Sobic007G053800 Sobic004G121400 Sobic004G121400 Sobic001G003200--Sobic004G121400 Sobic007G150100 Sobic007G150100 Sobic001G003200--Sobic007G150100 Sobic006G188000 Sobic006G188000 Sobic001G003200--Sobic006G188000 Sobic003G398800 Sobic003G398800 Sobic001G003200--Sobic003G398800 Sobic001G048400 Sobic001G048400 Sobic001G003200--Sobic001G048400 Sobic003G431700 Sobic003G431700 Sobic001G003200--Sobic003G431700 Sobic001G003200--Sobic001G504400 Sobic004G317500 Sobic004G317500 Sobic006G120500--Sobic004G317500 Sobic008G033200 Sobic008G033200 Sobic006G120500--Sobic008G033200 Sobic002G324500 Sobic002G324500 Sobic006G120500--Sobic002G324500 Sobic006G120500--Sobic005G001700 Sobic006G120500--Sobic004G027600 Sobic006G120500--Sobic002G403600 Sobic006G120500--Sobic003G036200 Sobic006G120500--Sobic006G064100 Sobic010G085100 Sobic010G085100 Sobic006G120500--Sobic010G085100 Sobic003G185900 Sobic003G185900 Sobic010G067100--Sobic003G185900 Sobic010G067100--Sobic001G504400 Sobic010G067100--Sobic003G398800 Sobic001G258200 Sobic001G258200 Sobic010G067100--Sobic001G258200 Sobic007G105500 Sobic007G105500 Sobic010G067100--Sobic007G105500 Sobic006G158100 Sobic006G158100 Sobic010G067100--Sobic006G158100 Sobic010G067100--Sobic002G206300 Sobic010G067100--Sobic009G038701 Sobic008G033000 Sobic008G033000 Sobic010G067100--Sobic008G033000
Octagon: transcription factors


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