Gene annotation
Transcriptome id Sobic.002G401900.1
Synonym Sb02g041680
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5X428
Pfam -
Panther DB PTHR37246 PTHR37246:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G29070 : Phospholipase A2 family protein
RAP-DB (Rice) LOC_Os07g46420.1 : expressed protein
MaizeGDB (Corn) Zm00025a015346
Brachypodium KQK14868
Barley HORVU2Hr1G023150.3 , HORVU2Hr1G023150.2 , HORVU2Hr1G023150.4
Wheat TraesCS2B02G154600 , TraesCS2D02G134100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G349200 cation efflux family protein, putative, expressed -
2 Sobic.008G033200 stem-specific protein TSJT1, putative, expressed -
3 Sobic.003G342100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydroflavonol-4-reductase, putative, expressed -
4 Sobic.001G073900 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
5 Sobic.003G372400 amidophosphoribosyltransferase, chloroplast precursor, putative, expressed K00764: purF, amidophosphoribosyltransferase
6 Sobic.003G036200 NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
7 Sobic.002G403600 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@rhythmically expressed gene 2 protein, putative, expressed -
8 Sobic.005G231500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AAA-type ATPase family protein, putative, expressed -
9 Sobic.006G130000 STRUBBELIG-RECEPTOR FAMILY 8 precursor, putative, expressed K13436: pto-interacting protein 1
10 Sobic.006G120500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
11 Sobic.008G047000 actin, putative, expressed K10355: actin, other eukaryote
12 Sobic.002G232200 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
13 Sobic.004G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
14 Sobic.003G406000 OsFBO2 - F-box and other domain containing protein, expressed -
15 Sobic.003G391600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AMP-binding domain containing protein, expressed -
16 Sobic.006G064100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
17 Sobic.005G089600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
18 Sobic.002G049600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.004G255600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@neutral/alkaline invertase, putative, expressed -
20 Sobic.008G117000 expressed protein K13457: RPM1, disease resistance protein RPM1


Gene co-expression network
sample Sobic002G401900 Sobic002G401900 Sobic003G349200 Sobic003G349200 Sobic002G401900--Sobic003G349200 Sobic008G033200 Sobic008G033200 Sobic002G401900--Sobic008G033200 Sobic003G342100 Sobic003G342100 Sobic002G401900--Sobic003G342100 Sobic001G073900 Sobic001G073900 Sobic002G401900--Sobic001G073900 Sobic003G372400 Sobic003G372400 Sobic002G401900--Sobic003G372400 Sobic003G036200 Sobic003G036200 Sobic002G401900--Sobic003G036200 Sobic002G403600 Sobic002G403600 Sobic002G401900--Sobic002G403600 Sobic005G231500 Sobic005G231500 Sobic002G401900--Sobic005G231500 Sobic006G130000 Sobic006G130000 Sobic002G401900--Sobic006G130000 Sobic001G339500 Sobic001G339500 Sobic003G349200--Sobic001G339500 Sobic003G349200--Sobic008G033200 Sobic003G349200--Sobic002G401900 Sobic006G011300 Sobic006G011300 Sobic003G349200--Sobic006G011300 Sobic006G215600 Sobic006G215600 Sobic003G349200--Sobic006G215600 Sobic002G232200 Sobic002G232200 Sobic003G349200--Sobic002G232200 Sobic002G339600 Sobic002G339600 Sobic003G349200--Sobic002G339600 Sobic006G120500 Sobic006G120500 Sobic003G349200--Sobic006G120500 Sobic003G349200--Sobic001G073900 Sobic008G033200--Sobic003G036200 Sobic002G324500 Sobic002G324500 Sobic008G033200--Sobic002G324500 Sobic004G215800 Sobic004G215800 Sobic008G033200--Sobic004G215800 Sobic006G093100 Sobic006G093100 Sobic008G033200--Sobic006G093100 Sobic008G033200--Sobic006G120500 Sobic002G390100 Sobic002G390100 Sobic008G033200--Sobic002G390100 Sobic008G117000 Sobic008G117000 Sobic008G033200--Sobic008G117000 Sobic007G105500 Sobic007G105500 Sobic008G033200--Sobic007G105500 Sobic003G185900 Sobic003G185900 Sobic008G033200--Sobic003G185900 Sobic003G342100--Sobic001G073900 Sobic001G062900 Sobic001G062900 Sobic003G342100--Sobic001G062900 Sobic003G332700 Sobic003G332700 Sobic003G342100--Sobic003G332700 Sobic009G242100 Sobic009G242100 Sobic003G342100--Sobic009G242100 Sobic005G045000 Sobic005G045000 Sobic003G342100--Sobic005G045000 Sobic003G426700 Sobic003G426700 Sobic003G342100--Sobic003G426700 Sobic001G531500 Sobic001G531500 Sobic003G342100--Sobic001G531500 Sobic006G064100 Sobic006G064100 Sobic003G342100--Sobic006G064100 Sobic002G049600 Sobic002G049600 Sobic003G342100--Sobic002G049600 Sobic001G073900--Sobic003G332700 Sobic008G001900 Sobic008G001900 Sobic001G073900--Sobic008G001900 Sobic001G073900--Sobic008G117000 Sobic001G073900--Sobic003G342100 Sobic001G065600 Sobic001G065600 Sobic001G073900--Sobic001G065600 Sobic001G073900--Sobic001G531500 Sobic005G001700 Sobic005G001700 Sobic001G073900--Sobic005G001700 Sobic004G235600 Sobic004G235600 Sobic001G073900--Sobic004G235600 Sobic001G073900--Sobic002G049600 Sobic003G372400--Sobic004G215800 Sobic002G056500 Sobic002G056500 Sobic003G372400--Sobic002G056500 Sobic003G372400--Sobic005G231500 Sobic003G097600 Sobic003G097600 Sobic003G372400--Sobic003G097600 Sobic003G372400--Sobic007G105500 Sobic003G314000 Sobic003G314000 Sobic003G372400--Sobic003G314000 Sobic003G372400--Sobic006G093100 Sobic008G129900 Sobic008G129900 Sobic003G372400--Sobic008G129900 Sobic003G371250 Sobic003G371250 Sobic003G372400--Sobic003G371250 Sobic003G036200--Sobic007G105500 Sobic003G036200--Sobic004G215800 Sobic003G036200--Sobic002G390100 Sobic002G404800 Sobic002G404800 Sobic003G036200--Sobic002G404800 Sobic003G036200--Sobic003G185900 Sobic005G101200 Sobic005G101200 Sobic003G036200--Sobic005G101200 Sobic010G085100 Sobic010G085100 Sobic003G036200--Sobic010G085100 Sobic009G256100 Sobic009G256100 Sobic003G036200--Sobic009G256100 Sobic003G036200--Sobic008G033200 Sobic002G403600--Sobic001G531500 Sobic004G027600 Sobic004G027600 Sobic002G403600--Sobic004G027600 Sobic002G403600--Sobic006G064100 Sobic002G403600--Sobic001G073900 Sobic004G356400 Sobic004G356400 Sobic002G403600--Sobic004G356400 Sobic002G403600--Sobic003G036200 Sobic002G403600--Sobic006G120500 Sobic002G403600--Sobic005G001700 Sobic010G251700 Sobic010G251700 Sobic002G403600--Sobic010G251700 Sobic003G367500 Sobic003G367500 Sobic005G231500--Sobic003G367500 Sobic005G231500--Sobic010G251700 Sobic005G206300 Sobic005G206300 Sobic005G231500--Sobic005G206300 Sobic004G154200 Sobic004G154200 Sobic005G231500--Sobic004G154200 Sobic005G231500--Sobic007G105500 Sobic001G329400 Sobic001G329400 Sobic005G231500--Sobic001G329400 Sobic001G134100 Sobic001G134100 Sobic005G231500--Sobic001G134100 Sobic005G231500--Sobic004G356400 Sobic005G231500--Sobic004G215800 Sobic006G064200 Sobic006G064200 Sobic006G130000--Sobic006G064200 Sobic006G055000 Sobic006G055000 Sobic006G130000--Sobic006G055000 Sobic006G130000--Sobic008G033200 Sobic002G201900 Sobic002G201900 Sobic006G130000--Sobic002G201900 Sobic002G200700 Sobic002G200700 Sobic006G130000--Sobic002G200700 Sobic005G089600 Sobic005G089600 Sobic006G130000--Sobic005G089600 Sobic007G141700 Sobic007G141700 Sobic006G130000--Sobic007G141700 Sobic006G130000--Sobic002G232200 Sobic003G224100 Sobic003G224100 Sobic006G130000--Sobic003G224100
Octagon: transcription factors


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