Gene annotation
Transcriptome id Sobic.009G089700.2,Sobic.009G089700.1
Synonym RAB-A2C, ATRAB-A2C, ATRAB11A, Sb09g008430, RABA2c, ATRABA2C
Functional annotation ras-related protein, putative, expressed
UniProt C5YVB1 , A0A1Z5R1T3
Pfam PF08477 PF00025
Panther DB PTHR24073 PTHR24073:SF600
NCBI CDD KOG0087; GTPase Rab11/YPT3, small G protein superfamily
KEGG Orthology K07904; Ras-related protein Rab-11A
Gene Ontology GO:0005525; GTP binding GO:0007264small GTPase mediated signal transduction GO:0005525GTP binding


Orthologs (automatic annotation)
TAIR AT1G07410 : RAB GTPase homolog A2B
RAP-DB (Rice) LOC_Os05g20050.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a036613 , Zm00025a044235 , Zm00025a037063 , Zm00025a038289 , Zm00025a008844 , Zm00025a042339 , Zm00025a038760 , Zm00025a008978 , Zm00025a016417 , Zm00025a028122 , Zm00025a013628 , Zm00025a044575 , Zm00025a039651 , Zm00025a043281 , Zm00025a051086
Brachypodium KQK10571 , KQK12398 , KQK12397 , KQK09101 , KQJ98137 , KQK08122 , KQK12193 , PNT73882 , KQK06841 , KQJ98073 , KQK10572
Barley HORVU5Hr1G120210.2 , HORVU5Hr1G120210.1 , HORVU5Hr1G120210.4 , HORVU5Hr1G080990.1 , HORVU5Hr1G080990.3 , HORVU5Hr1G080990.2 , HORVU1Hr1G033390.1 , HORVU1Hr1G033390.3 , HORVU1Hr1G033390.2 , HORVU1Hr1G033390.5 , HORVU1Hr1G033390.4 , HORVU1Hr1G033390.6 , HORVU1Hr1G001920.3 , HORVU1Hr1G001920.2 , HORVU5Hr1G056470.1 , HORVU3Hr1G061000.1 , HORVU3Hr1G061000.2 , HORVU3Hr1G061000.3 , HORVU3Hr1G061000.4 , HORVU3Hr1G061000.5 , HORVU3Hr1G061000.6 , HORVU3Hr1G061000.7 , HORVU3Hr1G061000.8 , HORVU5Hr1G114250.1 , HORVU5Hr1G114250.2 , HORVU3Hr1G085710.4 , HORVU3Hr1G085710.2 , HORVU3Hr1G085710.3 , HORVU3Hr1G085710.1
Wheat TraesCS5D02G498600 , TraesCS1A02G015400 , TraesCS3B02G272300 , TraesCS3B02G396200 , TraesCS1B02G150900 , TraesCS5A02G184100 , TraesCS1D02G405900 , TraesCS5D02G188900 , TraesCS3D02G357500 , TraesCS5B02G182200 , TraesCS4A02G343500 , TraesCS5D02G321800 , TraesCS5D02G529500 , TraesCS1A02G398400 , TraesCS1B02G426300 , TraesCS1B02G018900 , TraesCS1D02G013300 , TraesCS5B02G316300 , TraesCS5A02G485100 , TraesCS1D02G133200 , TraesCS3A02G364100 , TraesCS3A02G247000 , TraesCS5A02G315700 , TraesCS5B02G530800 , TraesCS5B02G498600 , TraesCS3D02G244500
Populus -


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cDNA sequences
Sobic.009G089700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G396700 NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative, expressed K03942: NADH dehydrogenase (ubiquinone) flavoprotein 1
2 Sobic.006G029000 nicotiana lesion-inducing like, putative, expressed -
3 Sobic.008G085700 exocyst complex component 5, putative, expressed -
4 Sobic.003G261800 expressed protein -
5 Sobic.005G111900 uncharacterized protein family UPF0016 domain containing protein, expressed -
6 Sobic.001G023100 ACBP4, putative, expressed -
7 Sobic.008G145100 glycosyl transferase, group 1 domain containing protein, expressed K03844: alpha-1,2-mannosyltransferase
8 Sobic.001G358500 GA20734-PA, putative, expressed -
9 Sobic.003G200800 vacuolar ATP synthase subunit d, putative, expressed K02146: ATPeV0D, V-type H+-transporting ATPase subunit d
10 Sobic.002G423800 trafficking protein particle complex subunit, putative, expressed -
11 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
12 Sobic.001G049400 OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
13 Sobic.005G144201 - -
14 Sobic.007G061400 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
15 Sobic.004G059400 TATA-binding protein-associated factor TAFII55 family protein, putative, expressed K03132: transcription initiation factor TFIID subunit 7
16 Sobic.005G018800 expressed protein -
17 Sobic.004G000100 uridine/cytidine kinase-like 1, putative, expressed K00876: udk, uridine kinase
18 Sobic.001G387800 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
19 Sobic.001G465400 dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed K00658: DLST, 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase)
20 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G089700 Sobic009G089700 Sobic002G396700 Sobic002G396700 Sobic009G089700--Sobic002G396700 Sobic006G029000 Sobic006G029000 Sobic009G089700--Sobic006G029000 Sobic008G085700 Sobic008G085700 Sobic009G089700--Sobic008G085700 Sobic003G261800 Sobic003G261800 Sobic009G089700--Sobic003G261800 Sobic005G111900 Sobic005G111900 Sobic009G089700--Sobic005G111900 Sobic001G023100 Sobic001G023100 Sobic009G089700--Sobic001G023100 Sobic008G145100 Sobic008G145100 Sobic009G089700--Sobic008G145100 Sobic001G358500 Sobic001G358500 Sobic009G089700--Sobic001G358500 Sobic003G200800 Sobic003G200800 Sobic009G089700--Sobic003G200800 Sobic004G344800 Sobic004G344800 Sobic002G396700--Sobic004G344800 Sobic009G191400 Sobic009G191400 Sobic002G396700--Sobic009G191400 Sobic007G171500 Sobic007G171500 Sobic002G396700--Sobic007G171500 Sobic001G112400 Sobic001G112400 Sobic002G396700--Sobic001G112400 Sobic001G115700 Sobic001G115700 Sobic002G396700--Sobic001G115700 Sobic002G396700--Sobic009G089700 Sobic001G458800 Sobic001G458800 Sobic002G396700--Sobic001G458800 Sobic002G262200 Sobic002G262200 Sobic002G396700--Sobic002G262200 Sobic001G465400 Sobic001G465400 Sobic002G396700--Sobic001G465400 Sobic006G029000--Sobic005G111900 Sobic001G077900 Sobic001G077900 Sobic006G029000--Sobic001G077900 Sobic009G149500 Sobic009G149500 Sobic006G029000--Sobic009G149500 Sobic006G029000--Sobic001G112400 Sobic001G338400 Sobic001G338400 Sobic006G029000--Sobic001G338400 Sobic001G443200 Sobic001G443200 Sobic006G029000--Sobic001G443200 Sobic006G029000--Sobic009G089700 Sobic004G181900 Sobic004G181900 Sobic006G029000--Sobic004G181900 Sobic003G196200 Sobic003G196200 Sobic006G029000--Sobic003G196200 Sobic002G020700 Sobic002G020700 Sobic008G085700--Sobic002G020700 Sobic001G449900 Sobic001G449900 Sobic008G085700--Sobic001G449900 Sobic002G070600 Sobic002G070600 Sobic008G085700--Sobic002G070600 Sobic010G020400 Sobic010G020400 Sobic008G085700--Sobic010G020400 Sobic008G055900 Sobic008G055900 Sobic008G085700--Sobic008G055900 Sobic005G110499 Sobic005G110499 Sobic008G085700--Sobic005G110499 Sobic001G049400 Sobic001G049400 Sobic008G085700--Sobic001G049400 Sobic001G161700 Sobic001G161700 Sobic008G085700--Sobic001G161700 Sobic010G192600 Sobic010G192600 Sobic008G085700--Sobic010G192600 Sobic002G141700 Sobic002G141700 Sobic003G261800--Sobic002G141700 Sobic003G261800--Sobic001G443200 Sobic004G347600 Sobic004G347600 Sobic003G261800--Sobic004G347600 Sobic010G040900 Sobic010G040900 Sobic003G261800--Sobic010G040900 Sobic003G261800--Sobic009G191400 Sobic003G261800--Sobic001G112400 Sobic001G387800 Sobic001G387800 Sobic003G261800--Sobic001G387800 Sobic004G000100 Sobic004G000100 Sobic003G261800--Sobic004G000100 Sobic003G261800--Sobic004G344800 Sobic007G061400 Sobic007G061400 Sobic005G111900--Sobic007G061400 Sobic001G014800 Sobic001G014800 Sobic005G111900--Sobic001G014800 Sobic005G111900--Sobic006G029000 Sobic006G002201 Sobic006G002201 Sobic005G111900--Sobic006G002201 Sobic004G194900 Sobic004G194900 Sobic005G111900--Sobic004G194900 Sobic003G349300 Sobic003G349300 Sobic005G111900--Sobic003G349300 Sobic010G205300 Sobic010G205300 Sobic005G111900--Sobic010G205300 Sobic001G473800 Sobic001G473800 Sobic005G111900--Sobic001G473800 Sobic005G111900--Sobic009G149500 Sobic002G029300 Sobic002G029300 Sobic001G023100--Sobic002G029300 Sobic007G173700 Sobic007G173700 Sobic001G023100--Sobic007G173700 Sobic009G226400 Sobic009G226400 Sobic001G023100--Sobic009G226400 Sobic001G023100--Sobic008G055900 Sobic001G023100--Sobic001G161700 Sobic008G072200 Sobic008G072200 Sobic001G023100--Sobic008G072200 Sobic001G193100 Sobic001G193100 Sobic001G023100--Sobic001G193100 Sobic003G270600 Sobic003G270600 Sobic001G023100--Sobic003G270600 Sobic001G023100--Sobic008G085700 Sobic010G073100 Sobic010G073100 Sobic008G145100--Sobic010G073100 Sobic002G423800 Sobic002G423800 Sobic008G145100--Sobic002G423800 Sobic008G110500 Sobic008G110500 Sobic008G145100--Sobic008G110500 Sobic001G444300 Sobic001G444300 Sobic008G145100--Sobic001G444300 Sobic008G145100--Sobic002G029300 Sobic001G033500 Sobic001G033500 Sobic008G145100--Sobic001G033500 Sobic004G010900 Sobic004G010900 Sobic008G145100--Sobic004G010900 Sobic006G203100 Sobic006G203100 Sobic008G145100--Sobic006G203100 Sobic008G129600 Sobic008G129600 Sobic008G145100--Sobic008G129600 Sobic001G428800 Sobic001G428800 Sobic001G358500--Sobic001G428800 Sobic001G358500--Sobic010G192600 Sobic008G018500 Sobic008G018500 Sobic001G358500--Sobic008G018500 Sobic001G358500--Sobic008G085700 Sobic001G467100 Sobic001G467100 Sobic001G358500--Sobic001G467100 Sobic003G182300 Sobic003G182300 Sobic001G358500--Sobic003G182300 Sobic006G039400 Sobic006G039400 Sobic001G358500--Sobic006G039400 Sobic001G358500--Sobic001G049400 Sobic001G211900 Sobic001G211900 Sobic001G358500--Sobic001G211900 Sobic005G018800 Sobic005G018800 Sobic003G200800--Sobic005G018800 Sobic007G161200 Sobic007G161200 Sobic003G200800--Sobic007G161200 Sobic008G021200 Sobic008G021200 Sobic003G200800--Sobic008G021200 Sobic004G060100 Sobic004G060100 Sobic003G200800--Sobic004G060100 Sobic003G200800--Sobic001G115700 Sobic009G256000 Sobic009G256000 Sobic003G200800--Sobic009G256000 Sobic004G283600 Sobic004G283600 Sobic003G200800--Sobic004G283600 Sobic003G200800--Sobic001G428800 Sobic003G200800--Sobic004G347600
Octagon: transcription factors


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