Gene annotation
Transcriptome id Sobic.004G059400.2,Sobic.004G059400.1,Sobic.004G059400.3
Synonym TAF7, Sb04g004990
Functional annotation TATA-binding protein-associated factor TAFII55 family protein, putative, expressed
UniProt A0A1Z5RLB3 , A0A1Z5RM66 , C5XW69
Pfam PF04658
Panther DB PTHR12228
NCBI CDD -
KEGG Orthology K03132; transcription initiation factor TFIID subunit 7
Gene Ontology GO:0006367; transcription initiation from RNA polymerase II promoter GO:0005669transcription factor TFIID complex


Orthologs (automatic annotation)
TAIR AT1G55300 : TBP-associated factor 7
RAP-DB (Rice) LOC_Os05g28010.1 : TATA-binding protein-associated factor TAFII55 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a019128 , Zm00025a035435 , Zm00025a052527
Brachypodium -
Barley -
Wheat TraesCS3A02G234400 , TraesCS3A02G234400 , TraesCS3A02G234400 , TraesCS3A02G234400 , TraesCS3A02G233900 , TraesCS7A02G453200 , TraesCS7A02G453200 , TraesCS7A02G453200 , TraesCS3D02G234800 , TraesCS3D02G234800 , TraesCS7B02G353900 , TraesCS7B02G353900 , TraesCS7B02G353900 , TraesCS7D02G442600 , TraesCS7D02G442600
Populus -


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cDNA sequences
Sobic.004G059400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
2 Sobic.002G428100 tim44-like domain containing protein, expressed K17804: mitochondrial import inner membrane translocase subunit TIM44
3 Sobic.009G089700 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
4 Sobic.001G358500 GA20734-PA, putative, expressed -
5 Sobic.001G428800 vacuolar sorting protein, putative, expressed -
6 Sobic.009G139300 expressed protein -
7 Sobic.008G018500 expressed protein -
8 Sobic.003G193500 CK1_CaseinKinase_1.2 - CK1 includes the casein kinase 1 kinases, expressed K02218: CSNK1, casein kinase 1
9 Sobic.001G404200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17790: mitochondrial import inner membrane translocase subunit TIM22
10 Sobic.001G211900 methyltransferase, putative, expressed K11437: type I protein arginine methyltransferase
11 Sobic.001G537500 GTP-binding protein, putative, expressed K06944: uncharacterized protein
12 Sobic.010G179700 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
13 Sobic.001G216100 expressed protein -
14 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
15 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
16 Sobic.004G017400 expressed protein -
17 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
18 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
19 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
20 Sobic.007G145400 expressed protein -


Gene co-expression network
sample Sobic004G059400 Sobic004G059400 Sobic003G132000 Sobic003G132000 Sobic004G059400--Sobic003G132000 Sobic002G428100 Sobic002G428100 Sobic004G059400--Sobic002G428100 Sobic009G089700 Sobic009G089700 Sobic004G059400--Sobic009G089700 Sobic001G358500 Sobic001G358500 Sobic004G059400--Sobic001G358500 Sobic001G428800 Sobic001G428800 Sobic004G059400--Sobic001G428800 Sobic009G139300 Sobic009G139300 Sobic004G059400--Sobic009G139300 Sobic008G018500 Sobic008G018500 Sobic004G059400--Sobic008G018500 Sobic003G193500 Sobic003G193500 Sobic004G059400--Sobic003G193500 Sobic001G404200 Sobic001G404200 Sobic004G059400--Sobic001G404200 Sobic001G114500 Sobic001G114500 Sobic003G132000--Sobic001G114500 Sobic006G270600 Sobic006G270600 Sobic003G132000--Sobic006G270600 Sobic003G046300 Sobic003G046300 Sobic003G132000--Sobic003G046300 Sobic008G103300 Sobic008G103300 Sobic003G132000--Sobic008G103300 Sobic001G487100 Sobic001G487100 Sobic003G132000--Sobic001G487100 Sobic004G192900 Sobic004G192900 Sobic003G132000--Sobic004G192900 Sobic009G164000 Sobic009G164000 Sobic003G132000--Sobic009G164000 Sobic002G371700 Sobic002G371700 Sobic003G132000--Sobic002G371700 Sobic003G363700 Sobic003G363700 Sobic003G132000--Sobic003G363700 Sobic001G099900 Sobic001G099900 Sobic002G428100--Sobic001G099900 Sobic001G211900 Sobic001G211900 Sobic002G428100--Sobic001G211900 Sobic002G428100--Sobic008G018500 Sobic009G077600 Sobic009G077600 Sobic002G428100--Sobic009G077600 Sobic002G428100--Sobic004G059400 Sobic002G131400 Sobic002G131400 Sobic002G428100--Sobic002G131400 Sobic003G025600 Sobic003G025600 Sobic002G428100--Sobic003G025600 Sobic003G146600 Sobic003G146600 Sobic002G428100--Sobic003G146600 Sobic008G055900 Sobic008G055900 Sobic002G428100--Sobic008G055900 Sobic002G396700 Sobic002G396700 Sobic009G089700--Sobic002G396700 Sobic006G029000 Sobic006G029000 Sobic009G089700--Sobic006G029000 Sobic008G085700 Sobic008G085700 Sobic009G089700--Sobic008G085700 Sobic003G261800 Sobic003G261800 Sobic009G089700--Sobic003G261800 Sobic005G111900 Sobic005G111900 Sobic009G089700--Sobic005G111900 Sobic001G023100 Sobic001G023100 Sobic009G089700--Sobic001G023100 Sobic008G145100 Sobic008G145100 Sobic009G089700--Sobic008G145100 Sobic009G089700--Sobic001G358500 Sobic003G200800 Sobic003G200800 Sobic009G089700--Sobic003G200800 Sobic001G358500--Sobic001G428800 Sobic010G192600 Sobic010G192600 Sobic001G358500--Sobic010G192600 Sobic001G358500--Sobic008G018500 Sobic001G358500--Sobic008G085700 Sobic001G467100 Sobic001G467100 Sobic001G358500--Sobic001G467100 Sobic003G182300 Sobic003G182300 Sobic001G358500--Sobic003G182300 Sobic006G039400 Sobic006G039400 Sobic001G358500--Sobic006G039400 Sobic001G049400 Sobic001G049400 Sobic001G358500--Sobic001G049400 Sobic001G358500--Sobic001G211900 Sobic001G428800--Sobic001G358500 Sobic001G449900 Sobic001G449900 Sobic001G428800--Sobic001G449900 Sobic010G230600 Sobic010G230600 Sobic001G428800--Sobic010G230600 Sobic004G092500 Sobic004G092500 Sobic001G428800--Sobic004G092500 Sobic010G223300 Sobic010G223300 Sobic001G428800--Sobic010G223300 Sobic001G428800--Sobic001G211900 Sobic001G428800--Sobic001G099900 Sobic010G020400 Sobic010G020400 Sobic001G428800--Sobic010G020400 Sobic001G428800--Sobic009G139300 Sobic009G139300--Sobic001G428800 Sobic002G256200 Sobic002G256200 Sobic009G139300--Sobic002G256200 Sobic003G422900 Sobic003G422900 Sobic009G139300--Sobic003G422900 Sobic002G268400 Sobic002G268400 Sobic009G139300--Sobic002G268400 Sobic001G014200 Sobic001G014200 Sobic009G139300--Sobic001G014200 Sobic004G345400 Sobic004G345400 Sobic009G139300--Sobic004G345400 Sobic009G139300--Sobic001G358500 Sobic009G214900 Sobic009G214900 Sobic009G139300--Sobic009G214900 Sobic002G117400 Sobic002G117400 Sobic009G139300--Sobic002G117400 Sobic008G018500--Sobic001G358500 Sobic008G018500--Sobic002G428100 Sobic007G208000 Sobic007G208000 Sobic008G018500--Sobic007G208000 Sobic003G222700 Sobic003G222700 Sobic008G018500--Sobic003G222700 Sobic004G084500 Sobic004G084500 Sobic008G018500--Sobic004G084500 Sobic001G389200 Sobic001G389200 Sobic008G018500--Sobic001G389200 Sobic009G199500 Sobic009G199500 Sobic008G018500--Sobic009G199500 Sobic008G018500--Sobic001G428800 Sobic003G394200 Sobic003G394200 Sobic008G018500--Sobic003G394200 Sobic003G302200 Sobic003G302200 Sobic003G193500--Sobic003G302200 Sobic003G193500--Sobic003G182300 Sobic009G128500 Sobic009G128500 Sobic003G193500--Sobic009G128500 Sobic007G042900 Sobic007G042900 Sobic003G193500--Sobic007G042900 Sobic003G193500--Sobic006G039400 Sobic001G019800 Sobic001G019800 Sobic003G193500--Sobic001G019800 Sobic010G169900 Sobic010G169900 Sobic003G193500--Sobic010G169900 Sobic002G079000 Sobic002G079000 Sobic003G193500--Sobic002G079000 Sobic003G193500--Sobic009G077600 Sobic006G094600 Sobic006G094600 Sobic001G404200--Sobic006G094600 Sobic001G332300 Sobic001G332300 Sobic001G404200--Sobic001G332300 Sobic007G118000 Sobic007G118000 Sobic001G404200--Sobic007G118000 Sobic003G374000 Sobic003G374000 Sobic001G404200--Sobic003G374000 Sobic005G184200 Sobic005G184200 Sobic001G404200--Sobic005G184200 Sobic008G110500 Sobic008G110500 Sobic001G404200--Sobic008G110500 Sobic007G014900 Sobic007G014900 Sobic001G404200--Sobic007G014900 Sobic003G148900 Sobic003G148900 Sobic001G404200--Sobic003G148900 Sobic001G404200--Sobic008G145100
Octagon: transcription factors


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