Gene annotation
Transcriptome id Sobic.008G179600.1
Synonym Sb08g022270
Functional annotation expressed protein
UniProt C5YSG9 , A0A109ND13
Pfam -
Panther DB PTHR31355 PTHR31355:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G54385 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os12g42960.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium KQJ85712
Barley HORVU5Hr1G006040.1 , HORVU5Hr1G006040.3 , HORVU5Hr1G006040.2 , HORVU5Hr1G006040.4 , HORVU5Hr1G006220.4 , HORVU5Hr1G006220.1 , HORVU5Hr1G006220.3
Wheat TraesCS5A02G022900 , TraesCS5D02G028500 , TraesCS5B02G019900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G090300 cytidine deaminase, putative, expressed -
2 Sobic.008G006300 prenylated rab acceptor, putative, expressed -
3 Sobic.004G056400 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
4 Sobic.003G016300 SFT2, putative, expressed -
5 Sobic.009G111400 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
6 Sobic.010G101600 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
7 Sobic.003G096000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
8 Sobic.008G062300 inositol-1-monophosphatase, putative, expressed K15422: 3'(2'), 5'-bisphosphate nucleotidase / inositol polyphosphate 1-phosphatase
9 Sobic.008G025600 cyclin-dependent kinase B1-1, putative, expressed K07760: cyclin-dependent kinase
10 Sobic.003G218400 cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed K02265: cytochrome c oxidase subunit 5b
11 Sobic.002G329900 core histone H2A/H2B/H3/H4, putative, expressed K11251: histone H2A
12 Sobic.006G124300 metalloprotease ATP23, putative, expressed K18156: ATP23, mitochondrial inner membrane protease ATP23
13 Sobic.008G112600 guanylate kinase, putative, expressed K00942: E2.7.4.8, guanylate kinase
14 Sobic.003G289601 - -
15 Sobic.010G028200 GDP-mannose 4,6 dehydratase 2, putative, expressed K01711: gmd, GDPmannose 4,6-dehydratase
16 Sobic.010G023900 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
17 Sobic.001G030300 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17778: mitochondrial import inner membrane translocase subunit TIM10
18 Sobic.003G074900 expressed protein -
19 Sobic.001G370700 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
20 Sobic.010G089500 annexin, putative, expressed -


Gene co-expression network
sample Sobic008G179600 Sobic008G179600 Sobic002G090300 Sobic002G090300 Sobic008G179600--Sobic002G090300 Sobic008G006300 Sobic008G006300 Sobic008G179600--Sobic008G006300 Sobic004G056400 Sobic004G056400 Sobic008G179600--Sobic004G056400 Sobic003G016300 Sobic003G016300 Sobic008G179600--Sobic003G016300 Sobic009G111400 Sobic009G111400 Sobic008G179600--Sobic009G111400 Sobic010G101600 Sobic010G101600 Sobic008G179600--Sobic010G101600 Sobic003G096000 Sobic003G096000 Sobic008G179600--Sobic003G096000 Sobic008G062300 Sobic008G062300 Sobic008G179600--Sobic008G062300 Sobic008G025600 Sobic008G025600 Sobic008G179600--Sobic008G025600 Sobic004G055700 Sobic004G055700 Sobic002G090300--Sobic004G055700 Sobic004G042000 Sobic004G042000 Sobic002G090300--Sobic004G042000 Sobic003G152200 Sobic003G152200 Sobic002G090300--Sobic003G152200 Sobic006G197100 Sobic006G197100 Sobic002G090300--Sobic006G197100 Sobic004G239500 Sobic004G239500 Sobic002G090300--Sobic004G239500 Sobic002G003800 Sobic002G003800 Sobic002G090300--Sobic002G003800 Sobic002G001700 Sobic002G001700 Sobic002G090300--Sobic002G001700 Sobic004G024100 Sobic004G024100 Sobic002G090300--Sobic004G024100 Sobic001G264000 Sobic001G264000 Sobic002G090300--Sobic001G264000 Sobic001G047800 Sobic001G047800 Sobic008G006300--Sobic001G047800 Sobic002G418400 Sobic002G418400 Sobic008G006300--Sobic002G418400 Sobic004G159400 Sobic004G159400 Sobic008G006300--Sobic004G159400 Sobic002G329900 Sobic002G329900 Sobic008G006300--Sobic002G329900 Sobic003G218400 Sobic003G218400 Sobic008G006300--Sobic003G218400 Sobic001G404800 Sobic001G404800 Sobic008G006300--Sobic001G404800 Sobic004G232500 Sobic004G232500 Sobic008G006300--Sobic004G232500 Sobic002G227300 Sobic002G227300 Sobic008G006300--Sobic002G227300 Sobic008G006300--Sobic004G055700 Sobic004G056400--Sobic003G096000 Sobic004G056400--Sobic010G101600 Sobic009G117200 Sobic009G117200 Sobic004G056400--Sobic009G117200 Sobic010G089500 Sobic010G089500 Sobic004G056400--Sobic010G089500 Sobic001G370700 Sobic001G370700 Sobic004G056400--Sobic001G370700 Sobic001G350600 Sobic001G350600 Sobic004G056400--Sobic001G350600 Sobic006G013000 Sobic006G013000 Sobic004G056400--Sobic006G013000 Sobic002G309700 Sobic002G309700 Sobic004G056400--Sobic002G309700 Sobic001G030300 Sobic001G030300 Sobic004G056400--Sobic001G030300 Sobic002G352200 Sobic002G352200 Sobic003G016300--Sobic002G352200 Sobic002G217500 Sobic002G217500 Sobic003G016300--Sobic002G217500 Sobic001G192700 Sobic001G192700 Sobic003G016300--Sobic001G192700 Sobic001G219800 Sobic001G219800 Sobic003G016300--Sobic001G219800 Sobic008G018300 Sobic008G018300 Sobic003G016300--Sobic008G018300 Sobic006G203900 Sobic006G203900 Sobic003G016300--Sobic006G203900 Sobic002G255400 Sobic002G255400 Sobic003G016300--Sobic002G255400 Sobic009G211900 Sobic009G211900 Sobic003G016300--Sobic009G211900 Sobic002G420600 Sobic002G420600 Sobic003G016300--Sobic002G420600 Sobic009G111400--Sobic010G101600 Sobic009G111400--Sobic002G090300 Sobic009G111400--Sobic003G096000 Sobic010G190300 Sobic010G190300 Sobic009G111400--Sobic010G190300 Sobic009G111400--Sobic010G089500 Sobic006G224000 Sobic006G224000 Sobic009G111400--Sobic006G224000 Sobic002G186900 Sobic002G186900 Sobic009G111400--Sobic002G186900 Sobic009G111400--Sobic004G056400 Sobic009G111400--Sobic004G055700 Sobic010G101600--Sobic010G089500 Sobic010G101600--Sobic004G056400 Sobic010G101600--Sobic003G096000 Sobic010G101600--Sobic009G111400 Sobic010G101600--Sobic001G370700 Sobic001G073600 Sobic001G073600 Sobic010G101600--Sobic001G073600 Sobic009G244900 Sobic009G244900 Sobic010G101600--Sobic009G244900 Sobic003G261100 Sobic003G261100 Sobic010G101600--Sobic003G261100 Sobic010G101600--Sobic002G186900 Sobic003G096000--Sobic004G056400 Sobic003G096000--Sobic010G089500 Sobic003G096000--Sobic001G350600 Sobic003G096000--Sobic010G101600 Sobic002G356400 Sobic002G356400 Sobic003G096000--Sobic002G356400 Sobic003G096000--Sobic001G030300 Sobic002G180300 Sobic002G180300 Sobic003G096000--Sobic002G180300 Sobic003G096000--Sobic006G013000 Sobic003G096000--Sobic001G047800 Sobic008G062300--Sobic010G101600 Sobic009G215300 Sobic009G215300 Sobic008G062300--Sobic009G215300 Sobic008G062300--Sobic001G073600 Sobic008G062300--Sobic009G211900 Sobic008G062300--Sobic003G096000 Sobic002G395000 Sobic002G395000 Sobic008G062300--Sobic002G395000 Sobic008G062300--Sobic003G016300 Sobic008G062300--Sobic001G370700 Sobic008G062300--Sobic006G203900 Sobic006G137800 Sobic006G137800 Sobic008G025600--Sobic006G137800 Sobic004G205100 Sobic004G205100 Sobic008G025600--Sobic004G205100 Sobic001G339700 Sobic001G339700 Sobic008G025600--Sobic001G339700 Sobic006G099900 Sobic006G099900 Sobic008G025600--Sobic006G099900 Sobic002G200600 Sobic002G200600 Sobic008G025600--Sobic002G200600 Sobic003G417800 Sobic003G417800 Sobic008G025600--Sobic003G417800 Sobic009G183400 Sobic009G183400 Sobic008G025600--Sobic009G183400 Sobic007G227300 Sobic007G227300 Sobic008G025600--Sobic007G227300 Sobic007G184600 Sobic007G184600 Sobic008G025600--Sobic007G184600
Octagon: transcription factors


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