Gene annotation
Transcriptome id Sobic.004G013300.1
Synonym ATGLR3.3, GLR3.3, Sb04g001300
Functional annotation glutamate receptor, putative, expressed
UniProt A0A194YN90
Pfam PF13458 PF00497 PF00060
Panther DB PTHR18966 PTHR18966:SF198
NCBI CDD KOG1052; Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits
KEGG Orthology K05387; glutamate receptor, ionotropic, plant
Gene Ontology GO:0016020; membrane GO:0004970ionotropic glutamate receptor activity


Orthologs (automatic annotation)
TAIR AT1G42540 : glutamate receptor 3.3
RAP-DB (Rice) LOC_Os02g02540.1 : glutamate receptor, putative, expressed
MaizeGDB (Corn) Zm00025a017797 , Zm00025a018721 , Zm00025a035045
Brachypodium KQJ92921 , PNT65738
Barley HORVU6Hr1G009520.4 , HORVU6Hr1G009520.5 , HORVU6Hr1G009520.6 , HORVU6Hr1G009520.7 , HORVU6Hr1G009520.1 , HORVU6Hr1G009520.2 , HORVU6Hr1G009520.3 , HORVU2Hr1G049510.3 , HORVU2Hr1G049510.2 , HORVU0Hr1G018770.1 , HORVU0Hr1G018770.2 , HORVU0Hr1G036590.4 , HORVU0Hr1G036590.1 , HORVU0Hr1G036590.3 , HORVU0Hr1G036590.2 , HORVU2Hr1G049510.1 , HORVU2Hr1G049510.5 , HORVU2Hr1G049510.4
Wheat TraesCS6A02G049000 , TraesCS6B02G065400 , TraesCSU02G107700 , TraesCSU02G107700 , TraesCS6B02G065500 , TraesCS6A02G048700 , TraesCSU02G107900 , TraesCSU02G107990 , TraesCSU02G108800 , TraesCS6B02G065700 , TraesCS6B02G065700 , TraesCS6A02G049900 , TraesCS6B02G066200 , TraesCS6A02G048800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G007600 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3
2 Sobic.002G214900 polygalacturonase, putative, expressed -
3 Sobic.003G368500 Yip1 domain containing protein, expressed -
4 Sobic.010G062800 transporter, major facilitator family, putative, expressed K13783: MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 1/2
5 Sobic.007G188100 Candidate orthologue to the wheat Pm40 gene(PubMedID : 27755575)@protein kinase domain containing protein, expressed K13429: chitin elicitor receptor kinase 1
6 Sobic.010G213400 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
7 Sobic.009G104000 ranBP1 domain containing protein, expressed K15306: Ran-binding protein 1
8 Sobic.008G016900 glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing)
9 Sobic.006G182100 ORM1, putative, expressed -
10 Sobic.002G343500 CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
11 Sobic.001G415000 expressed protein -
12 Sobic.008G127500 expressed protein -
13 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
14 Sobic.010G038700 expressed protein -
15 Sobic.002G272900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
16 Sobic.010G180700 protein phosphatase 2C, putative, expressed K14803: protein phosphatase PTC2/3
17 Sobic.010G210000 ubiquitin family protein, putative, expressed K12158: ubiquitin-like protein Nedd8
18 Sobic.009G171100 prenylated rab acceptor, putative, expressed -
19 Sobic.010G163600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
20 Sobic.001G173300 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase


Gene co-expression network
sample Sobic004G013300 Sobic004G013300 Sobic001G007600 Sobic001G007600 Sobic004G013300--Sobic001G007600 Sobic002G214900 Sobic002G214900 Sobic004G013300--Sobic002G214900 Sobic003G368500 Sobic003G368500 Sobic004G013300--Sobic003G368500 Sobic010G062800 Sobic010G062800 Sobic004G013300--Sobic010G062800 Sobic007G188100 Sobic007G188100 Sobic004G013300--Sobic007G188100 Sobic010G213400 Sobic010G213400 Sobic004G013300--Sobic010G213400 Sobic009G104000 Sobic009G104000 Sobic004G013300--Sobic009G104000 Sobic008G016900 Sobic008G016900 Sobic004G013300--Sobic008G016900 Sobic006G182100 Sobic006G182100 Sobic004G013300--Sobic006G182100 Sobic004G138800 Sobic004G138800 Sobic001G007600--Sobic004G138800 Sobic009G067000 Sobic009G067000 Sobic001G007600--Sobic009G067000 Sobic001G418900 Sobic001G418900 Sobic001G007600--Sobic001G418900 Sobic003G443300 Sobic003G443300 Sobic001G007600--Sobic003G443300 Sobic001G505500 Sobic001G505500 Sobic001G007600--Sobic001G505500 Sobic001G007600--Sobic003G368500 Sobic006G252200 Sobic006G252200 Sobic001G007600--Sobic006G252200 Sobic009G182300 Sobic009G182300 Sobic001G007600--Sobic009G182300 Sobic007G076300 Sobic007G076300 Sobic001G007600--Sobic007G076300 Sobic007G114200 Sobic007G114200 Sobic002G214900--Sobic007G114200 Sobic002G214900--Sobic006G182100 Sobic001G409900 Sobic001G409900 Sobic002G214900--Sobic001G409900 Sobic002G214900--Sobic003G368500 Sobic007G115100 Sobic007G115100 Sobic002G214900--Sobic007G115100 Sobic001G403700 Sobic001G403700 Sobic002G214900--Sobic001G403700 Sobic001G224400 Sobic001G224400 Sobic002G214900--Sobic001G224400 Sobic007G195701 Sobic007G195701 Sobic002G214900--Sobic007G195701 Sobic003G362400 Sobic003G362400 Sobic002G214900--Sobic003G362400 Sobic003G368500--Sobic010G213400 Sobic010G018400 Sobic010G018400 Sobic003G368500--Sobic010G018400 Sobic003G368500--Sobic001G224400 Sobic003G155400 Sobic003G155400 Sobic003G368500--Sobic003G155400 Sobic004G310300 Sobic004G310300 Sobic003G368500--Sobic004G310300 Sobic004G284500 Sobic004G284500 Sobic003G368500--Sobic004G284500 Sobic005G188100 Sobic005G188100 Sobic003G368500--Sobic005G188100 Sobic007G051000 Sobic007G051000 Sobic003G368500--Sobic007G051000 Sobic003G368500--Sobic001G418900 Sobic010G062800--Sobic008G016900 Sobic010G062800--Sobic007G188100 Sobic010G062800--Sobic001G403700 Sobic006G192500 Sobic006G192500 Sobic010G062800--Sobic006G192500 Sobic010G228000 Sobic010G228000 Sobic010G062800--Sobic010G228000 Sobic001G283500 Sobic001G283500 Sobic010G062800--Sobic001G283500 Sobic010G062800--Sobic002G214900 Sobic004G145200 Sobic004G145200 Sobic010G062800--Sobic004G145200 Sobic010G062800--Sobic006G182100 Sobic007G188100--Sobic010G228000 Sobic002G362900 Sobic002G362900 Sobic007G188100--Sobic002G362900 Sobic002G353400 Sobic002G353400 Sobic007G188100--Sobic002G353400 Sobic002G374100 Sobic002G374100 Sobic007G188100--Sobic002G374100 Sobic004G259500 Sobic004G259500 Sobic007G188100--Sobic004G259500 Sobic007G188100--Sobic008G016900 Sobic002G330300 Sobic002G330300 Sobic007G188100--Sobic002G330300 Sobic007G188100--Sobic010G062800 Sobic002G118600 Sobic002G118600 Sobic007G188100--Sobic002G118600 Sobic010G213400--Sobic003G368500 Sobic003G249800 Sobic003G249800 Sobic010G213400--Sobic003G249800 Sobic009G033700 Sobic009G033700 Sobic010G213400--Sobic009G033700 Sobic010G213400--Sobic004G284500 Sobic010G163600 Sobic010G163600 Sobic010G213400--Sobic010G163600 Sobic010G213400--Sobic001G224400 Sobic006G062800 Sobic006G062800 Sobic010G213400--Sobic006G062800 Sobic001G445800 Sobic001G445800 Sobic010G213400--Sobic001G445800 Sobic010G153100 Sobic010G153100 Sobic010G213400--Sobic010G153100 Sobic001G404100 Sobic001G404100 Sobic009G104000--Sobic001G404100 Sobic010G008100 Sobic010G008100 Sobic009G104000--Sobic010G008100 Sobic010G038700 Sobic010G038700 Sobic009G104000--Sobic010G038700 Sobic001G440700 Sobic001G440700 Sobic009G104000--Sobic001G440700 Sobic001G502200 Sobic001G502200 Sobic009G104000--Sobic001G502200 Sobic007G132700 Sobic007G132700 Sobic009G104000--Sobic007G132700 Sobic001G067900 Sobic001G067900 Sobic009G104000--Sobic001G067900 Sobic009G104000--Sobic010G062800 Sobic009G179200 Sobic009G179200 Sobic009G104000--Sobic009G179200 Sobic008G016900--Sobic002G330300 Sobic002G379400 Sobic002G379400 Sobic008G016900--Sobic002G379400 Sobic008G016900--Sobic010G062800 Sobic008G016900--Sobic001G283500 Sobic008G016900--Sobic007G188100 Sobic008G016900--Sobic004G145200 Sobic001G162100 Sobic001G162100 Sobic008G016900--Sobic001G162100 Sobic009G059700 Sobic009G059700 Sobic008G016900--Sobic009G059700 Sobic002G343500 Sobic002G343500 Sobic008G016900--Sobic002G343500 Sobic006G182100--Sobic004G284500 Sobic006G182100--Sobic009G033700 Sobic002G046100 Sobic002G046100 Sobic006G182100--Sobic002G046100 Sobic006G182100--Sobic010G018400 Sobic004G196300 Sobic004G196300 Sobic006G182100--Sobic004G196300 Sobic001G281400 Sobic001G281400 Sobic006G182100--Sobic001G281400 Sobic008G185400 Sobic008G185400 Sobic006G182100--Sobic008G185400 Sobic006G182100--Sobic003G368500 Sobic006G182100--Sobic001G445800
Octagon: transcription factors


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