Gene annotation
Transcriptome id Sobic.001G204900.1,Sobic.001G204900.2,Sobic.001G204900.3
Synonym
Functional annotation cystathionin beta synthase protein, putative, expressed
UniProt A0A1Z5S6V9 , A0A1B6QJY9
Pfam PF00571
Panther DB PTHR13780 PTHR13780:SF55
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G27460 : Cystathionine beta-synthase (CBS) family protein
RAP-DB (Rice) LOC_Os10g35630.1 : cystathionin beta synthase protein, putative, expressed
MaizeGDB (Corn) Zm00025a017499 , Zm00025a006448
Brachypodium KQJ97307
Barley HORVU1Hr1G044960.1 , HORVU1Hr1G044960.2
Wheat TraesCS1A02G170000 , TraesCS1D02G167600 , TraesCS1B02G187200
Populus -


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cDNA sequences
Sobic.001G204900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G263600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.003G324400 Not investigated(PubMedID : 23766026)@Contribute to rice salt tolerance under a salt inducible abscisic acid 2 (ABA2) promoter(PubMedID : 28393269)@AP2 domain containing protein, expressed -
3 Sobic.010G223600 ubiquitin family protein, putative, expressed K08770: ubiquitin C
4 Sobic.010G204600 SNF7 domain containing protein, putative, expressed K12197: CHMP1, VPS46, charged multivesicular body protein 1
5 Sobic.002G405600 early response to dehydration 15, putative, expressed -
6 Sobic.004G169200 U-box domain-containing protein, putative, expressed -
7 Sobic.009G238500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
8 Sobic.001G422900 zinc finger family protein, putative, expressed -
9 Sobic.001G295700 Triacylglycerol lipase like protein (Os)(PubMedID : 27208977)@triacylglycerol lipase like protein, putative, expressed -
10 Sobic.002G339000 OsFBX257 - F-box domain containing protein, expressed -
11 Sobic.009G222600 expressed protein -
12 Sobic.001G055600 prenylated rab acceptor, putative, expressed -
13 Sobic.001G037000 PHD finger protein, putative, expressed -
14 Sobic.009G241801 - -
15 Sobic.004G097100 F-box family protein, putative, expressed -
16 Sobic.009G036000 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
17 Sobic.003G202200 uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
18 Sobic.001G383700 OsCML27 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
19 Sobic.002G395300 gibberellin receptor GID1L2, putative, expressed -
20 Sobic.001G481100 DUF581 domain containing protein, expressed -


Gene co-expression network
sample Sobic001G204900 Sobic001G204900 Sobic006G263600 Sobic006G263600 Sobic001G204900--Sobic006G263600 Sobic003G324400 Sobic003G324400 Sobic001G204900--Sobic003G324400 Sobic010G223600 Sobic010G223600 Sobic001G204900--Sobic010G223600 Sobic010G204600 Sobic010G204600 Sobic001G204900--Sobic010G204600 Sobic002G405600 Sobic002G405600 Sobic001G204900--Sobic002G405600 Sobic004G169200 Sobic004G169200 Sobic001G204900--Sobic004G169200 Sobic009G238500 Sobic009G238500 Sobic001G204900--Sobic009G238500 Sobic001G422900 Sobic001G422900 Sobic001G204900--Sobic001G422900 Sobic001G295700 Sobic001G295700 Sobic001G204900--Sobic001G295700 Sobic001G259700 Sobic001G259700 Sobic006G263600--Sobic001G259700 Sobic006G263600--Sobic004G169200 Sobic009G247900 Sobic009G247900 Sobic006G263600--Sobic009G247900 Sobic009G036000 Sobic009G036000 Sobic006G263600--Sobic009G036000 Sobic001G383700 Sobic001G383700 Sobic006G263600--Sobic001G383700 Sobic006G263600--Sobic003G324400 Sobic007G213800 Sobic007G213800 Sobic006G263600--Sobic007G213800 Sobic001G079300 Sobic001G079300 Sobic006G263600--Sobic001G079300 Sobic002G282300 Sobic002G282300 Sobic006G263600--Sobic002G282300 Sobic006G165100 Sobic006G165100 Sobic003G324400--Sobic006G165100 Sobic001G040200 Sobic001G040200 Sobic003G324400--Sobic001G040200 Sobic002G140300 Sobic002G140300 Sobic003G324400--Sobic002G140300 Sobic009G036100 Sobic009G036100 Sobic003G324400--Sobic009G036100 Sobic003G324400--Sobic006G263600 Sobic003G324400--Sobic009G247900 Sobic003G324400--Sobic002G405600 Sobic003G313800 Sobic003G313800 Sobic003G324400--Sobic003G313800 Sobic003G324400--Sobic002G282300 Sobic003G393900 Sobic003G393900 Sobic010G223600--Sobic003G393900 Sobic010G223600--Sobic009G036000 Sobic010G223600--Sobic009G247900 Sobic002G339000 Sobic002G339000 Sobic010G223600--Sobic002G339000 Sobic009G122400 Sobic009G122400 Sobic010G223600--Sobic009G122400 Sobic010G223600--Sobic004G169200 Sobic001G471200 Sobic001G471200 Sobic010G223600--Sobic001G471200 Sobic009G224100 Sobic009G224100 Sobic010G223600--Sobic009G224100 Sobic001G035100 Sobic001G035100 Sobic010G223600--Sobic001G035100 Sobic001G095300 Sobic001G095300 Sobic010G204600--Sobic001G095300 Sobic003G063200 Sobic003G063200 Sobic010G204600--Sobic003G063200 Sobic010G204600--Sobic002G405600 Sobic004G157000 Sobic004G157000 Sobic010G204600--Sobic004G157000 Sobic009G023200 Sobic009G023200 Sobic010G204600--Sobic009G023200 Sobic009G129000 Sobic009G129000 Sobic010G204600--Sobic009G129000 Sobic001G055600 Sobic001G055600 Sobic010G204600--Sobic001G055600 Sobic003G202200 Sobic003G202200 Sobic010G204600--Sobic003G202200 Sobic009G033700 Sobic009G033700 Sobic010G204600--Sobic009G033700 Sobic002G245800 Sobic002G245800 Sobic002G405600--Sobic002G245800 Sobic002G405600--Sobic003G324400 Sobic002G405600--Sobic003G202200 Sobic002G405600--Sobic010G204600 Sobic002G405600--Sobic009G247900 Sobic010G267600 Sobic010G267600 Sobic002G405600--Sobic010G267600 Sobic002G405600--Sobic006G263600 Sobic002G405600--Sobic001G259700 Sobic002G405600--Sobic001G095300 Sobic002G395300 Sobic002G395300 Sobic004G169200--Sobic002G395300 Sobic002G358300 Sobic002G358300 Sobic004G169200--Sobic002G358300 Sobic003G428700 Sobic003G428700 Sobic004G169200--Sobic003G428700 Sobic004G169200--Sobic006G263600 Sobic004G191400 Sobic004G191400 Sobic004G169200--Sobic004G191400 Sobic004G169200--Sobic009G122400 Sobic010G209200 Sobic010G209200 Sobic004G169200--Sobic010G209200 Sobic002G220000 Sobic002G220000 Sobic004G169200--Sobic002G220000 Sobic004G169200--Sobic002G339000 Sobic009G238500--Sobic001G055600 Sobic003G364600 Sobic003G364600 Sobic009G238500--Sobic003G364600 Sobic009G238500--Sobic003G324400 Sobic006G158266 Sobic006G158266 Sobic009G238500--Sobic006G158266 Sobic007G074000 Sobic007G074000 Sobic009G238500--Sobic007G074000 Sobic009G238500--Sobic001G204900 Sobic009G238500--Sobic003G063200 Sobic003G092900 Sobic003G092900 Sobic009G238500--Sobic003G092900 Sobic009G238500--Sobic009G247900 Sobic001G422900--Sobic002G245800 Sobic001G422900--Sobic010G204600 Sobic001G037000 Sobic001G037000 Sobic001G422900--Sobic001G037000 Sobic001G422900--Sobic001G095300 Sobic003G181500 Sobic003G181500 Sobic001G422900--Sobic003G181500 Sobic003G249800 Sobic003G249800 Sobic001G422900--Sobic003G249800 Sobic005G229700 Sobic005G229700 Sobic001G422900--Sobic005G229700 Sobic002G211900 Sobic002G211900 Sobic001G422900--Sobic002G211900 Sobic001G422900--Sobic002G405600 Sobic001G295700--Sobic002G358300 Sobic001G295700--Sobic001G259700 Sobic002G269100 Sobic002G269100 Sobic001G295700--Sobic002G269100 Sobic004G308900 Sobic004G308900 Sobic001G295700--Sobic004G308900 Sobic004G097100 Sobic004G097100 Sobic001G295700--Sobic004G097100 Sobic001G100501 Sobic001G100501 Sobic001G295700--Sobic001G100501 Sobic001G295700--Sobic002G395300 Sobic001G295700--Sobic004G169200 Sobic003G230100 Sobic003G230100 Sobic001G295700--Sobic003G230100
Octagon: transcription factors


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