Gene annotation
Transcriptome id Sobic.001G384900.2
Synonym
Functional annotation hypothetical protein
UniProt A0A1B6QNH4 , C6JSD3
Pfam -
Panther DB PTHR23002 PTHR23002:SF54
NCBI CDD -
KEGG Orthology K09250; cellular nucleic acid-binding protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G43590 : zinc knuckle (CCHC-type) family protein
RAP-DB (Rice) LOC_Os11g19100.2 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G005600 SEC14 cytosolic factor family protein, putative, expressed -
2 Sobic.005G106500 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K11165: dehydrogenase/reductase SDR family member 7
3 Sobic.009G050900 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed K10532: heparan-alpha-glucosaminide N-acetyltransferase
4 Sobic.006G153900 transporter, major facilitator family, putative, expressed -
5 Sobic.002G351900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
6 Sobic.008G166300 RING finger protein 13, putative, expressed K15692: RNF13, E3 ubiquitin-protein ligase RNF13
7 Sobic.001G081000 nucleotide-binding protein-like, putative, expressed K03593: mrp, ATP-binding protein involved in chromosome partitioning
8 Sobic.004G018300 expressed protein K06970: 23S rRNA (adenine1618-N6)-methyltransferase
9 Sobic.009G178300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
10 Sobic.004G087600 RNA recognition motif containing protein, putative, expressed -
11 Sobic.010G056200 WD-40 repeat family protein, putative, expressed -
12 Sobic.002G031400 OsFBL39 - F-box domain and LRR containing protein, expressed -
13 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
14 Sobic.001G159400 protein kinase domain containing protein, expressed -
15 Sobic.008G083000 ZOS12-03 - C2H2 zinc finger protein, expressed -
16 Sobic.003G106200 expressed protein K13144: integrator complex subunit 7
17 Sobic.008G011100 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed -
18 Sobic.007G161800 kinase, pfkB family, putative, expressed -
19 Sobic.003G141500 CGMC_GSK.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
20 Sobic.007G203200 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR


Gene co-expression network
sample Sobic001G384900 Sobic001G384900 Sobic010G005600 Sobic010G005600 Sobic001G384900--Sobic010G005600 Sobic005G106500 Sobic005G106500 Sobic001G384900--Sobic005G106500 Sobic009G050900 Sobic009G050900 Sobic001G384900--Sobic009G050900 Sobic006G153900 Sobic006G153900 Sobic001G384900--Sobic006G153900 Sobic002G351900 Sobic002G351900 Sobic001G384900--Sobic002G351900 Sobic008G166300 Sobic008G166300 Sobic001G384900--Sobic008G166300 Sobic001G081000 Sobic001G081000 Sobic001G384900--Sobic001G081000 Sobic004G018300 Sobic004G018300 Sobic001G384900--Sobic004G018300 Sobic009G178300 Sobic009G178300 Sobic001G384900--Sobic009G178300 Sobic007G052900 Sobic007G052900 Sobic010G005600--Sobic007G052900 Sobic010G176550 Sobic010G176550 Sobic010G005600--Sobic010G176550 Sobic002G031400 Sobic002G031400 Sobic010G005600--Sobic002G031400 Sobic001G159400 Sobic001G159400 Sobic010G005600--Sobic001G159400 Sobic004G174400 Sobic004G174400 Sobic010G005600--Sobic004G174400 Sobic009G215800 Sobic009G215800 Sobic010G005600--Sobic009G215800 Sobic010G005600--Sobic002G351900 Sobic010G005600--Sobic001G384900 Sobic010G056200 Sobic010G056200 Sobic010G005600--Sobic010G056200 Sobic001G227200 Sobic001G227200 Sobic005G106500--Sobic001G227200 Sobic004G140600 Sobic004G140600 Sobic005G106500--Sobic004G140600 Sobic001G219600 Sobic001G219600 Sobic005G106500--Sobic001G219600 Sobic010G279700 Sobic010G279700 Sobic005G106500--Sobic010G279700 Sobic007G203200 Sobic007G203200 Sobic005G106500--Sobic007G203200 Sobic001G493200 Sobic001G493200 Sobic005G106500--Sobic001G493200 Sobic009G024400 Sobic009G024400 Sobic005G106500--Sobic009G024400 Sobic003G266001 Sobic003G266001 Sobic005G106500--Sobic003G266001 Sobic006G194400 Sobic006G194400 Sobic005G106500--Sobic006G194400 Sobic003G141500 Sobic003G141500 Sobic009G050900--Sobic003G141500 Sobic009G050900--Sobic007G203200 Sobic001G281600 Sobic001G281600 Sobic009G050900--Sobic001G281600 Sobic008G083000 Sobic008G083000 Sobic009G050900--Sobic008G083000 Sobic009G050900--Sobic001G219600 Sobic007G071200 Sobic007G071200 Sobic009G050900--Sobic007G071200 Sobic008G011100 Sobic008G011100 Sobic009G050900--Sobic008G011100 Sobic009G050900--Sobic001G493200 Sobic010G140400 Sobic010G140400 Sobic009G050900--Sobic010G140400 Sobic001G498600 Sobic001G498600 Sobic006G153900--Sobic001G498600 Sobic007G065100 Sobic007G065100 Sobic006G153900--Sobic007G065100 Sobic002G425700 Sobic002G425700 Sobic006G153900--Sobic002G425700 Sobic001G178700 Sobic001G178700 Sobic006G153900--Sobic001G178700 Sobic010G112000 Sobic010G112000 Sobic006G153900--Sobic010G112000 Sobic006G131500 Sobic006G131500 Sobic006G153900--Sobic006G131500 Sobic001G291000 Sobic001G291000 Sobic006G153900--Sobic001G291000 Sobic010G000600 Sobic010G000600 Sobic006G153900--Sobic010G000600 Sobic006G153900--Sobic001G384900 Sobic002G351900--Sobic010G056200 Sobic007G115200 Sobic007G115200 Sobic002G351900--Sobic007G115200 Sobic002G351900--Sobic010G005600 Sobic002G351900--Sobic001G281600 Sobic004G121100 Sobic004G121100 Sobic002G351900--Sobic004G121100 Sobic007G078500 Sobic007G078500 Sobic002G351900--Sobic007G078500 Sobic009G157200 Sobic009G157200 Sobic002G351900--Sobic009G157200 Sobic002G351900--Sobic007G052900 Sobic007G095500 Sobic007G095500 Sobic002G351900--Sobic007G095500 Sobic009G065100 Sobic009G065100 Sobic008G166300--Sobic009G065100 Sobic008G125501 Sobic008G125501 Sobic008G166300--Sobic008G125501 Sobic008G166300--Sobic009G215800 Sobic009G000500 Sobic009G000500 Sobic008G166300--Sobic009G000500 Sobic004G096500 Sobic004G096500 Sobic008G166300--Sobic004G096500 Sobic004G205600 Sobic004G205600 Sobic008G166300--Sobic004G205600 Sobic004G325400 Sobic004G325400 Sobic008G166300--Sobic004G325400 Sobic006G222300 Sobic006G222300 Sobic008G166300--Sobic006G222300 Sobic004G021200 Sobic004G021200 Sobic008G166300--Sobic004G021200 Sobic001G081000--Sobic004G018300 Sobic003G221600 Sobic003G221600 Sobic001G081000--Sobic003G221600 Sobic008G131000 Sobic008G131000 Sobic001G081000--Sobic008G131000 Sobic001G081000--Sobic003G141500 Sobic008G014500 Sobic008G014500 Sobic001G081000--Sobic008G014500 Sobic003G258900 Sobic003G258900 Sobic001G081000--Sobic003G258900 Sobic001G081000--Sobic008G083000 Sobic007G220300 Sobic007G220300 Sobic001G081000--Sobic007G220300 Sobic009G145101 Sobic009G145101 Sobic001G081000--Sobic009G145101 Sobic004G087600 Sobic004G087600 Sobic004G018300--Sobic004G087600 Sobic001G167200 Sobic001G167200 Sobic004G018300--Sobic001G167200 Sobic004G018300--Sobic008G011100 Sobic002G158700 Sobic002G158700 Sobic004G018300--Sobic002G158700 Sobic002G396000 Sobic002G396000 Sobic004G018300--Sobic002G396000 Sobic004G018300--Sobic001G081000 Sobic004G018300--Sobic008G083000 Sobic009G126400 Sobic009G126400 Sobic004G018300--Sobic009G126400 Sobic004G223600 Sobic004G223600 Sobic004G018300--Sobic004G223600 Sobic007G002300 Sobic007G002300 Sobic009G178300--Sobic007G002300 Sobic009G178300--Sobic006G153900 Sobic010G021000 Sobic010G021000 Sobic009G178300--Sobic010G021000 Sobic009G178300--Sobic001G384900 Sobic001G275900 Sobic001G275900 Sobic009G178300--Sobic001G275900 Sobic004G030100 Sobic004G030100 Sobic009G178300--Sobic004G030100 Sobic002G164800 Sobic002G164800 Sobic009G178300--Sobic002G164800 Sobic009G178300--Sobic004G018300 Sobic009G178300--Sobic003G141500
Octagon: transcription factors


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