Gene annotation
Transcriptome id Sobic.003G383300.2,Sobic.003G383300.1
Synonym
Functional annotation RNA polymerase III RPC4 domain containing protein, expressed
UniProt A0A1B6Q7G4 , A0A1B6Q7E7
Pfam PF05132
Panther DB PTHR13408 PTHR13408:SF4
NCBI CDD -
KEGG Orthology K03026; RPC4, DNA-directed RNA polymerase III subunit RPC4
Gene Ontology GO:0006383; transcription by RNA polymerase III GO:0005666RNA polymerase III complex GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G09380 : RNA polymerase III RPC4
RAP-DB (Rice) LOC_Os01g66580.1 : RNA polymerase III RPC4 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a039464 , Zm00025a026491
Brachypodium KQK10968 , KQK10970 , KQK10971 , KQK10972
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G383300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G052900 acetyltransferase, GNAT family, putative, expressed -
2 Sobic.004G027800 beta-amylase, putative, expressed -
3 Sobic.008G136200 spotted leaf 11, putative, expressed -
4 Sobic.006G085300 Regulator of chromosome condensation domain containing protein, expressed -
5 Sobic.010G277500 expressed protein -
6 Sobic.006G258500 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
7 Sobic.007G037900 oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed -
8 Sobic.002G144933 - -
9 Sobic.006G246900 expressed protein -
10 Sobic.002G380500 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12891: splicing factor, arginine/serine-rich 2
11 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
12 Sobic.010G005600 SEC14 cytosolic factor family protein, putative, expressed -
13 Sobic.004G065650 - -
14 Sobic.002G228700 patatin, putative, expressed -
15 Sobic.004G039700 OsFBX188 - F-box domain containing protein, expressed -
16 Sobic.007G225800 NOL1/NOP2/sun family protein, putative, expressed K15335: NSUN2, tRNA (cytosine34-C5)-methyltransferase
17 Sobic.001G318432 - -
18 Sobic.009G215800 OsFBX173 - F-box domain containing protein, expressed -
19 Sobic.008G063000 transcriptional corepressor SEUSS, putative, expressed -
20 Sobic.007G054000 powdery mildew resistance protein PM3b, putative, expressed -


Gene co-expression network
sample Sobic003G383300 Sobic003G383300 Sobic007G052900 Sobic007G052900 Sobic003G383300--Sobic007G052900 Sobic004G027800 Sobic004G027800 Sobic003G383300--Sobic004G027800 Sobic008G136200 Sobic008G136200 Sobic003G383300--Sobic008G136200 Sobic006G085300 Sobic006G085300 Sobic003G383300--Sobic006G085300 Sobic010G277500 Sobic010G277500 Sobic003G383300--Sobic010G277500 Sobic006G258500 Sobic006G258500 Sobic003G383300--Sobic006G258500 Sobic007G037900 Sobic007G037900 Sobic003G383300--Sobic007G037900 Sobic002G144933 Sobic002G144933 Sobic003G383300--Sobic002G144933 Sobic006G246900 Sobic006G246900 Sobic003G383300--Sobic006G246900 Sobic010G056200 Sobic010G056200 Sobic007G052900--Sobic010G056200 Sobic004G113800 Sobic004G113800 Sobic007G052900--Sobic004G113800 Sobic002G209600 Sobic002G209600 Sobic007G052900--Sobic002G209600 Sobic010G005600 Sobic010G005600 Sobic007G052900--Sobic010G005600 Sobic004G083700 Sobic004G083700 Sobic007G052900--Sobic004G083700 Sobic007G054000 Sobic007G054000 Sobic007G052900--Sobic007G054000 Sobic010G280100 Sobic010G280100 Sobic007G052900--Sobic010G280100 Sobic006G180432 Sobic006G180432 Sobic007G052900--Sobic006G180432 Sobic009G065100 Sobic009G065100 Sobic007G052900--Sobic009G065100 Sobic004G027800--Sobic010G277500 Sobic004G208900 Sobic004G208900 Sobic004G027800--Sobic004G208900 Sobic009G040600 Sobic009G040600 Sobic004G027800--Sobic009G040600 Sobic002G031400 Sobic002G031400 Sobic004G027800--Sobic002G031400 Sobic005G104500 Sobic005G104500 Sobic004G027800--Sobic005G104500 Sobic004G258700 Sobic004G258700 Sobic004G027800--Sobic004G258700 Sobic001G083400 Sobic001G083400 Sobic004G027800--Sobic001G083400 Sobic008G063000 Sobic008G063000 Sobic004G027800--Sobic008G063000 Sobic010G136600 Sobic010G136600 Sobic004G027800--Sobic010G136600 Sobic008G136200--Sobic002G144933 Sobic007G205800 Sobic007G205800 Sobic008G136200--Sobic007G205800 Sobic007G011400 Sobic007G011400 Sobic008G136200--Sobic007G011400 Sobic009G215800 Sobic009G215800 Sobic008G136200--Sobic009G215800 Sobic008G136200--Sobic009G065100 Sobic001G094000 Sobic001G094000 Sobic008G136200--Sobic001G094000 Sobic002G157000 Sobic002G157000 Sobic008G136200--Sobic002G157000 Sobic003G197800 Sobic003G197800 Sobic008G136200--Sobic003G197800 Sobic009G087800 Sobic009G087800 Sobic008G136200--Sobic009G087800 Sobic006G085300--Sobic003G383300 Sobic010G232400 Sobic010G232400 Sobic006G085300--Sobic010G232400 Sobic002G402600 Sobic002G402600 Sobic006G085300--Sobic002G402600 Sobic007G225800 Sobic007G225800 Sobic006G085300--Sobic007G225800 Sobic001G124000 Sobic001G124000 Sobic006G085300--Sobic001G124000 Sobic003G195150 Sobic003G195150 Sobic006G085300--Sobic003G195150 Sobic003G163100 Sobic003G163100 Sobic006G085300--Sobic003G163100 Sobic001G202000 Sobic001G202000 Sobic006G085300--Sobic001G202000 Sobic002G380500 Sobic002G380500 Sobic006G085300--Sobic002G380500 Sobic010G277500--Sobic004G208900 Sobic006G209850 Sobic006G209850 Sobic010G277500--Sobic006G209850 Sobic007G065400 Sobic007G065400 Sobic010G277500--Sobic007G065400 Sobic009G260500 Sobic009G260500 Sobic010G277500--Sobic009G260500 Sobic003G280800 Sobic003G280800 Sobic010G277500--Sobic003G280800 Sobic004G009600 Sobic004G009600 Sobic010G277500--Sobic004G009600 Sobic008G028700 Sobic008G028700 Sobic010G277500--Sobic008G028700 Sobic010G277500--Sobic004G258700 Sobic006G216800 Sobic006G216800 Sobic010G277500--Sobic006G216800 Sobic010G056000 Sobic010G056000 Sobic006G258500--Sobic010G056000 Sobic004G290800 Sobic004G290800 Sobic006G258500--Sobic004G290800 Sobic006G258500--Sobic009G215800 Sobic007G134600 Sobic007G134600 Sobic006G258500--Sobic007G134600 Sobic001G111900 Sobic001G111900 Sobic006G258500--Sobic001G111900 Sobic001G107500 Sobic001G107500 Sobic006G258500--Sobic001G107500 Sobic009G134500 Sobic009G134500 Sobic006G258500--Sobic009G134500 Sobic006G258500--Sobic003G383300 Sobic009G127900 Sobic009G127900 Sobic006G258500--Sobic009G127900 Sobic003G268300 Sobic003G268300 Sobic007G037900--Sobic003G268300 Sobic001G420200 Sobic001G420200 Sobic007G037900--Sobic001G420200 Sobic007G037900--Sobic006G246900 Sobic007G037900--Sobic002G144933 Sobic001G274200 Sobic001G274200 Sobic007G037900--Sobic001G274200 Sobic007G037900--Sobic009G127900 Sobic001G162300 Sobic001G162300 Sobic007G037900--Sobic001G162300 Sobic007G037900--Sobic004G290800 Sobic007G037900--Sobic002G157000 Sobic008G173900 Sobic008G173900 Sobic002G144933--Sobic008G173900 Sobic002G144933--Sobic002G157000 Sobic002G144933--Sobic001G420200 Sobic002G144933--Sobic003G268300 Sobic002G144933--Sobic001G274200 Sobic002G144933--Sobic007G037900 Sobic004G145500 Sobic004G145500 Sobic002G144933--Sobic004G145500 Sobic003G170100 Sobic003G170100 Sobic002G144933--Sobic003G170100 Sobic002G144933--Sobic009G065100 Sobic006G246900--Sobic001G162300 Sobic006G246900--Sobic003G268300 Sobic006G246900--Sobic007G037900 Sobic006G246900--Sobic001G094000 Sobic006G246900--Sobic002G157000 Sobic006G246900--Sobic009G134500 Sobic006G246900--Sobic008G063000 Sobic001G477800 Sobic001G477800 Sobic006G246900--Sobic001G477800 Sobic006G246900--Sobic007G011400
Octagon: transcription factors


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