Gene annotation
Transcriptome id Sobic.004G027800.1,Sobic.004G027800.2
Synonym Sb04g002450, BAM8, BMY2
Functional annotation beta-amylase, putative, expressed
UniProt A0A194YMC5 , A0A1Z5RKL3
Pfam PF05687 PF01373
Panther DB PTHR31352 PTHR31352:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016161; beta-amylase activity GO:0000272polysaccharide catabolic process


Orthologs (automatic annotation)
TAIR AT5G45300 : beta-amylase 2
RAP-DB (Rice) LOC_Os02g03690.1 : beta-amylase, putative, expressed
MaizeGDB (Corn) Zm00025a034986
Brachypodium KQJ93112 , KQJ93113 , KQJ93114 , KQJ93115
Barley HORVU6Hr1G015670.20 , HORVU6Hr1G015670.21 , HORVU6Hr1G015670.22 , HORVU6Hr1G015670.23 , HORVU6Hr1G015670.24 , HORVU6Hr1G015670.25 , HORVU6Hr1G015670.26 , HORVU6Hr1G015670.27 , HORVU6Hr1G015670.15 , HORVU6Hr1G015670.14 , HORVU6Hr1G015670.17 , HORVU6Hr1G015670.16 , HORVU6Hr1G015670.10 , HORVU6Hr1G015670.12 , HORVU6Hr1G015670.19 , HORVU6Hr1G015670.18 , HORVU6Hr1G015670.1 , HORVU6Hr1G015670.3 , HORVU6Hr1G015670.2 , HORVU6Hr1G015670.5 , HORVU6Hr1G015670.4 , HORVU6Hr1G015670.7 , HORVU6Hr1G015670.6 , HORVU6Hr1G015670.9 , HORVU6Hr1G015670.8 , HORVU6Hr1G015670.11 , HORVU6Hr1G015670.13
Wheat TraesCS6A02G085800 , TraesCS6A02G085800 , TraesCS6A02G085800 , TraesCS6A02G085800 , TraesCS6B02G116400 , TraesCS6B02G116400 , TraesCS6B02G116400 , TraesCS6B02G116400 , TraesCSU02G078100 , TraesCSU02G078100 , TraesCSU02G078100
Populus -


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cDNA sequences
Sobic.004G027800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G277500 expressed protein -
2 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -
3 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
4 Sobic.002G031400 OsFBL39 - F-box domain and LRR containing protein, expressed -
5 Sobic.005G104500 phosphatidylinositol kinase, putative, expressed K00888: phosphatidylinositol 4-kinase A
6 Sobic.004G258700 PHD-finger family protein, expressed -
7 Sobic.001G083400 expressed protein -
8 Sobic.008G063000 transcriptional corepressor SEUSS, putative, expressed -
9 Sobic.010G136600 - -
10 Sobic.002G144933 - -
11 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
12 Sobic.003G052200 G-patch domain containing protein, expressed -
13 Sobic.003G268300 surp module family protein, putative, expressed -
14 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
15 Sobic.009G138800 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
16 Sobic.003G383300 RNA polymerase III RPC4 domain containing protein, expressed K03026: RPC4, DNA-directed RNA polymerase III subunit RPC4
17 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
18 Sobic.008G028700 SET domain containing protein, expressed -
19 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
20 Sobic.006G209850 - -


Gene co-expression network
sample Sobic004G027800 Sobic004G027800 Sobic010G277500 Sobic010G277500 Sobic004G027800--Sobic010G277500 Sobic004G208900 Sobic004G208900 Sobic004G027800--Sobic004G208900 Sobic009G040600 Sobic009G040600 Sobic004G027800--Sobic009G040600 Sobic002G031400 Sobic002G031400 Sobic004G027800--Sobic002G031400 Sobic005G104500 Sobic005G104500 Sobic004G027800--Sobic005G104500 Sobic004G258700 Sobic004G258700 Sobic004G027800--Sobic004G258700 Sobic001G083400 Sobic001G083400 Sobic004G027800--Sobic001G083400 Sobic008G063000 Sobic008G063000 Sobic004G027800--Sobic008G063000 Sobic010G136600 Sobic010G136600 Sobic004G027800--Sobic010G136600 Sobic010G277500--Sobic004G208900 Sobic006G209850 Sobic006G209850 Sobic010G277500--Sobic006G209850 Sobic007G065400 Sobic007G065400 Sobic010G277500--Sobic007G065400 Sobic009G260500 Sobic009G260500 Sobic010G277500--Sobic009G260500 Sobic003G280800 Sobic003G280800 Sobic010G277500--Sobic003G280800 Sobic004G009600 Sobic004G009600 Sobic010G277500--Sobic004G009600 Sobic008G028700 Sobic008G028700 Sobic010G277500--Sobic008G028700 Sobic010G277500--Sobic004G258700 Sobic006G216800 Sobic006G216800 Sobic010G277500--Sobic006G216800 Sobic004G208900--Sobic009G040600 Sobic004G208900--Sobic010G277500 Sobic003G052200 Sobic003G052200 Sobic004G208900--Sobic003G052200 Sobic010G139000 Sobic010G139000 Sobic004G208900--Sobic010G139000 Sobic008G113100 Sobic008G113100 Sobic004G208900--Sobic008G113100 Sobic002G006900 Sobic002G006900 Sobic004G208900--Sobic002G006900 Sobic004G208900--Sobic008G028700 Sobic004G208900--Sobic003G280800 Sobic009G126400 Sobic009G126400 Sobic004G208900--Sobic009G126400 Sobic009G040600--Sobic004G009600 Sobic009G040600--Sobic002G006900 Sobic008G047800 Sobic008G047800 Sobic009G040600--Sobic008G047800 Sobic009G040600--Sobic004G208900 Sobic005G112300 Sobic005G112300 Sobic009G040600--Sobic005G112300 Sobic009G040600--Sobic007G065400 Sobic009G040600--Sobic008G028700 Sobic002G309600 Sobic002G309600 Sobic009G040600--Sobic002G309600 Sobic009G040600--Sobic009G126400 Sobic002G031400--Sobic010G277500 Sobic007G161000 Sobic007G161000 Sobic002G031400--Sobic007G161000 Sobic001G035900 Sobic001G035900 Sobic002G031400--Sobic001G035900 Sobic003G254000 Sobic003G254000 Sobic002G031400--Sobic003G254000 Sobic008G011100 Sobic008G011100 Sobic002G031400--Sobic008G011100 Sobic010G176550 Sobic010G176550 Sobic002G031400--Sobic010G176550 Sobic002G031400--Sobic003G280800 Sobic002G031400--Sobic009G260500 Sobic002G031400--Sobic004G258700 Sobic004G065100 Sobic004G065100 Sobic005G104500--Sobic004G065100 Sobic005G104500--Sobic002G309600 Sobic001G241200 Sobic001G241200 Sobic005G104500--Sobic001G241200 Sobic009G138800 Sobic009G138800 Sobic005G104500--Sobic009G138800 Sobic005G104500--Sobic002G006900 Sobic005G104500--Sobic003G280800 Sobic003G119000 Sobic003G119000 Sobic005G104500--Sobic003G119000 Sobic007G126600 Sobic007G126600 Sobic005G104500--Sobic007G126600 Sobic007G117400 Sobic007G117400 Sobic005G104500--Sobic007G117400 Sobic004G258700--Sobic008G113100 Sobic004G258700--Sobic008G028700 Sobic001G456900 Sobic001G456900 Sobic004G258700--Sobic001G456900 Sobic003G148000 Sobic003G148000 Sobic004G258700--Sobic003G148000 Sobic003G101500 Sobic003G101500 Sobic004G258700--Sobic003G101500 Sobic004G258700--Sobic010G277500 Sobic004G258700--Sobic007G065400 Sobic004G258700--Sobic007G161000 Sobic004G258700--Sobic009G040600 Sobic001G083400--Sobic007G065400 Sobic001G083400--Sobic002G309600 Sobic009G210500 Sobic009G210500 Sobic001G083400--Sobic009G210500 Sobic001G083400--Sobic010G277500 Sobic001G026200 Sobic001G026200 Sobic001G083400--Sobic001G026200 Sobic001G083400--Sobic008G113100 Sobic010G069100 Sobic010G069100 Sobic001G083400--Sobic010G069100 Sobic001G083400--Sobic007G117400 Sobic001G083400--Sobic009G040600 Sobic001G094000 Sobic001G094000 Sobic008G063000--Sobic001G094000 Sobic003G268300 Sobic003G268300 Sobic008G063000--Sobic003G268300 Sobic006G246900 Sobic006G246900 Sobic008G063000--Sobic006G246900 Sobic002G157000 Sobic002G157000 Sobic008G063000--Sobic002G157000 Sobic003G200200 Sobic003G200200 Sobic008G063000--Sobic003G200200 Sobic008G173900 Sobic008G173900 Sobic008G063000--Sobic008G173900 Sobic008G063000--Sobic002G006900 Sobic002G144933 Sobic002G144933 Sobic008G063000--Sobic002G144933 Sobic004G145500 Sobic004G145500 Sobic008G063000--Sobic004G145500 Sobic007G096600 Sobic007G096600 Sobic010G136600--Sobic007G096600 Sobic010G136600--Sobic004G145500 Sobic010G136600--Sobic002G144933 Sobic010G136600--Sobic008G173900 Sobic010G136600--Sobic008G028700 Sobic010G136600--Sobic009G126400 Sobic010G136600--Sobic010G277500 Sobic010G136600--Sobic009G210500 Sobic010G136600--Sobic004G009600
Octagon: transcription factors


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