Gene annotation
Transcriptome id Sobic.006G085300.1
Synonym Sb06g017130, UVR8
Functional annotation Regulator of chromosome condensation domain containing protein, expressed
UniProt C5Y8Q8
Pfam PF00415
Panther DB PTHR22870 PTHR22870:SF193
NCBI CDD KOG1427; Uncharacterized conserved protein, contains RCC1 domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G63860 : Regulator of chromosome condensation (RCC1) family protein
RAP-DB (Rice) LOC_Os04g35570.1 : Regulator of chromosome condensation domain containing protein, expressed
MaizeGDB (Corn) Zm00025a011317
Brachypodium KQJ82707 , KQJ82706 , KQJ82705 , KQJ82708
Barley HORVU2Hr1G076180.2 , HORVU2Hr1G076180.3 , HORVU2Hr1G076180.4 , HORVU2Hr1G076180.1 , HORVU6Hr1G030600.9 , HORVU6Hr1G030600.8 , HORVU6Hr1G030600.5 , HORVU6Hr1G030600.4 , HORVU6Hr1G030600.7 , HORVU6Hr1G030600.6 , HORVU6Hr1G030600.1 , HORVU6Hr1G030600.3 , HORVU6Hr1G030600.2
Wheat TraesCS2D02G304900 , TraesCS2D02G304900 , TraesCS2D02G304900 , TraesCS6B02G180900 , TraesCS2B02G323100 , TraesCS2B02G323100 , TraesCS2A02G306400 , TraesCS6D02G142500 , TraesCS2A02G306400 , TraesCS2A02G306400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G383300 RNA polymerase III RPC4 domain containing protein, expressed K03026: RPC4, DNA-directed RNA polymerase III subunit RPC4
2 Sobic.010G232400 - -
3 Sobic.002G402600 pleckstrin homology domain-containing protein, putative, expressed -
4 Sobic.007G225800 NOL1/NOP2/sun family protein, putative, expressed K15335: NSUN2, tRNA (cytosine34-C5)-methyltransferase
5 Sobic.001G124000 pinin/SDK/memA protein, putative, expressed K13114: pinin
6 Sobic.003G195150 - K18121: glyoxylate/succinic semialdehyde reductase
7 Sobic.003G163100 expressed protein K08819: cyclin-dependent kinase 12/13
8 Sobic.001G202000 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
9 Sobic.002G380500 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12891: splicing factor, arginine/serine-rich 2
10 Sobic.007G037900 oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed -
11 Sobic.004G143400 - -
12 Sobic.006G191400 - -
13 Sobic.002G209600 CBS domain containing protein, expressed -
14 Sobic.001G420500 spotted leaf 11, putative, expressed -
15 Sobic.001G269300 OsFBD15 - F-box and FBD domain containing protein, expressed -
16 Sobic.004G290800 GRAS family transcription factor(PubMedID : 23915383)@scarecrow, putative, expressed -
17 Sobic.008G013600 - -
18 Sobic.007G052900 acetyltransferase, GNAT family, putative, expressed -
19 Sobic.005G036600 calmodulin-binding protein, putative, expressed -
20 Sobic.009G191100 expressed protein -


Gene co-expression network
sample Sobic006G085300 Sobic006G085300 Sobic003G383300 Sobic003G383300 Sobic006G085300--Sobic003G383300 Sobic010G232400 Sobic010G232400 Sobic006G085300--Sobic010G232400 Sobic002G402600 Sobic002G402600 Sobic006G085300--Sobic002G402600 Sobic007G225800 Sobic007G225800 Sobic006G085300--Sobic007G225800 Sobic001G124000 Sobic001G124000 Sobic006G085300--Sobic001G124000 Sobic003G195150 Sobic003G195150 Sobic006G085300--Sobic003G195150 Sobic003G163100 Sobic003G163100 Sobic006G085300--Sobic003G163100 Sobic001G202000 Sobic001G202000 Sobic006G085300--Sobic001G202000 Sobic002G380500 Sobic002G380500 Sobic006G085300--Sobic002G380500 Sobic007G052900 Sobic007G052900 Sobic003G383300--Sobic007G052900 Sobic004G027800 Sobic004G027800 Sobic003G383300--Sobic004G027800 Sobic008G136200 Sobic008G136200 Sobic003G383300--Sobic008G136200 Sobic003G383300--Sobic006G085300 Sobic010G277500 Sobic010G277500 Sobic003G383300--Sobic010G277500 Sobic006G258500 Sobic006G258500 Sobic003G383300--Sobic006G258500 Sobic007G037900 Sobic007G037900 Sobic003G383300--Sobic007G037900 Sobic002G144933 Sobic002G144933 Sobic003G383300--Sobic002G144933 Sobic006G246900 Sobic006G246900 Sobic003G383300--Sobic006G246900 Sobic010G232400--Sobic002G402600 Sobic006G045901 Sobic006G045901 Sobic010G232400--Sobic006G045901 Sobic010G232400--Sobic006G085300 Sobic001G261541 Sobic001G261541 Sobic010G232400--Sobic001G261541 Sobic010G232400--Sobic003G383300 Sobic006G015250 Sobic006G015250 Sobic010G232400--Sobic006G015250 Sobic010G232400--Sobic007G225800 Sobic008G013600 Sobic008G013600 Sobic010G232400--Sobic008G013600 Sobic008G150700 Sobic008G150700 Sobic010G232400--Sobic008G150700 Sobic002G031400 Sobic002G031400 Sobic002G402600--Sobic002G031400 Sobic001G420500 Sobic001G420500 Sobic002G402600--Sobic001G420500 Sobic009G260500 Sobic009G260500 Sobic002G402600--Sobic009G260500 Sobic009G210500 Sobic009G210500 Sobic002G402600--Sobic009G210500 Sobic002G402600--Sobic010G277500 Sobic005G039500 Sobic005G039500 Sobic002G402600--Sobic005G039500 Sobic003G161000 Sobic003G161000 Sobic002G402600--Sobic003G161000 Sobic001G407200 Sobic001G407200 Sobic002G402600--Sobic001G407200 Sobic002G402600--Sobic008G150700 Sobic008G092532 Sobic008G092532 Sobic007G225800--Sobic008G092532 Sobic003G390400 Sobic003G390400 Sobic007G225800--Sobic003G390400 Sobic002G346600 Sobic002G346600 Sobic007G225800--Sobic002G346600 Sobic006G063001 Sobic006G063001 Sobic007G225800--Sobic006G063001 Sobic005G063700 Sobic005G063700 Sobic007G225800--Sobic005G063700 Sobic002G228700 Sobic002G228700 Sobic007G225800--Sobic002G228700 Sobic007G225800--Sobic002G402600 Sobic009G191100 Sobic009G191100 Sobic007G225800--Sobic009G191100 Sobic007G225800--Sobic003G163100 Sobic009G024400 Sobic009G024400 Sobic001G124000--Sobic009G024400 Sobic004G039200 Sobic004G039200 Sobic001G124000--Sobic004G039200 Sobic008G113100 Sobic008G113100 Sobic001G124000--Sobic008G113100 Sobic004G208900 Sobic004G208900 Sobic001G124000--Sobic004G208900 Sobic001G227200 Sobic001G227200 Sobic001G124000--Sobic001G227200 Sobic007G117400 Sobic007G117400 Sobic001G124000--Sobic007G117400 Sobic009G065100 Sobic009G065100 Sobic001G124000--Sobic009G065100 Sobic001G124000--Sobic010G277500 Sobic008G011100 Sobic008G011100 Sobic001G124000--Sobic008G011100 Sobic006G263700 Sobic006G263700 Sobic003G195150--Sobic006G263700 Sobic006G013500 Sobic006G013500 Sobic003G195150--Sobic006G013500 Sobic003G173950 Sobic003G173950 Sobic003G195150--Sobic003G173950 Sobic003G195150--Sobic006G085300 Sobic003G195150--Sobic003G390400 Sobic003G195150--Sobic007G225800 Sobic002G209600 Sobic002G209600 Sobic003G195150--Sobic002G209600 Sobic001G306900 Sobic001G306900 Sobic003G195150--Sobic001G306900 Sobic003G195150--Sobic005G063700 Sobic006G210100 Sobic006G210100 Sobic003G163100--Sobic006G210100 Sobic001G360900 Sobic001G360900 Sobic003G163100--Sobic001G360900 Sobic001G253200 Sobic001G253200 Sobic003G163100--Sobic001G253200 Sobic001G303675 Sobic001G303675 Sobic003G163100--Sobic001G303675 Sobic009G251300 Sobic009G251300 Sobic003G163100--Sobic009G251300 Sobic006G191400 Sobic006G191400 Sobic003G163100--Sobic006G191400 Sobic002G151600 Sobic002G151600 Sobic003G163100--Sobic002G151600 Sobic003G185250 Sobic003G185250 Sobic003G163100--Sobic003G185250 Sobic009G045700 Sobic009G045700 Sobic003G163100--Sobic009G045700 Sobic004G208600 Sobic004G208600 Sobic001G202000--Sobic004G208600 Sobic001G261573 Sobic001G261573 Sobic001G202000--Sobic001G261573 Sobic001G494500 Sobic001G494500 Sobic001G202000--Sobic001G494500 Sobic001G384800 Sobic001G384800 Sobic001G202000--Sobic001G384800 Sobic003G128400 Sobic003G128400 Sobic001G202000--Sobic003G128400 Sobic007G013000 Sobic007G013000 Sobic001G202000--Sobic007G013000 Sobic003G045300 Sobic003G045300 Sobic001G202000--Sobic003G045300 Sobic004G020800 Sobic004G020800 Sobic001G202000--Sobic004G020800 Sobic004G225600 Sobic004G225600 Sobic001G202000--Sobic004G225600 Sobic008G173900 Sobic008G173900 Sobic002G380500--Sobic008G173900 Sobic003G170100 Sobic003G170100 Sobic002G380500--Sobic003G170100 Sobic001G420200 Sobic001G420200 Sobic002G380500--Sobic001G420200 Sobic002G380500--Sobic002G144933 Sobic002G157000 Sobic002G157000 Sobic002G380500--Sobic002G157000 Sobic003G200200 Sobic003G200200 Sobic002G380500--Sobic003G200200 Sobic003G108700 Sobic003G108700 Sobic002G380500--Sobic003G108700 Sobic003G268300 Sobic003G268300 Sobic002G380500--Sobic003G268300 Sobic005G110472 Sobic005G110472 Sobic002G380500--Sobic005G110472
Octagon: transcription factors


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