Gene annotation
Transcriptome id Sobic.002G402600.2,Sobic.002G402600.1
Synonym Sb02g041730
Functional annotation pleckstrin homology domain-containing protein, putative, expressed
UniProt A0A1W0W7T2 , C5X467
Pfam PF00169 PF14389 PF00620
Panther DB PTHR23176 PTHR23176:SF44
NCBI CDD KOG4271; Rho-GTPase activating protein
KEGG Orthology -
Gene Ontology GO:0007165; signal transduction


Orthologs (automatic annotation)
TAIR AT5G19390 : Rho GTPase activation protein (RhoGAP) with PH domain
RAP-DB (Rice) LOC_Os07g46450.1 : pleckstrin homology domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a015348 , Zm00025a002533 , Zm00025a050218 , Zm00025a049026 , Zm00025a008513
Brachypodium PNT77395 , KQK14864 , KQK21623 , KQK21624 , KQK21625
Barley HORVU4Hr1G042610.28 , HORVU4Hr1G042610.29 , HORVU4Hr1G042610.24 , HORVU4Hr1G042610.25 , HORVU4Hr1G042610.26 , HORVU4Hr1G042610.20 , HORVU4Hr1G042610.21 , HORVU4Hr1G042610.22 , HORVU2Hr1G023000.3 , HORVU4Hr1G042610.13 , HORVU4Hr1G042610.12 , HORVU4Hr1G042610.15 , HORVU4Hr1G042610.14 , HORVU4Hr1G042610.17 , HORVU4Hr1G042610.16 , HORVU4Hr1G042610.19 , HORVU4Hr1G042610.18 , HORVU2Hr1G023000.9 , HORVU2Hr1G023000.8 , HORVU2Hr1G023000.2 , HORVU2Hr1G023000.1 , HORVU2Hr1G023000.7 , HORVU2Hr1G023000.6 , HORVU2Hr1G023000.5 , HORVU2Hr1G023000.4 , HORVU4Hr1G042610.7 , HORVU4Hr1G042610.6 , HORVU4Hr1G042610.1 , HORVU4Hr1G042610.3 , HORVU4Hr1G042610.2 , HORVU4Hr1G042610.9 , HORVU4Hr1G042610.8 , HORVU4Hr1G042610.33 , HORVU4Hr1G042610.32 , HORVU4Hr1G042610.31 , HORVU4Hr1G042610.30 , HORVU2Hr1G023000.13 , HORVU2Hr1G023000.12 , HORVU2Hr1G023000.11 , HORVU2Hr1G023000.10
Wheat TraesCS4A02G163400 , TraesCS2D02G133500 , TraesCS2B02G153800 , TraesCS2B02G153800 , TraesCS2B02G153800 , TraesCS2B02G153800 , TraesCS2B02G153800 , TraesCS2B02G153800 , TraesCS2A02G131400 , TraesCS4A02G163400 , TraesCS4A02G163400 , TraesCS2A02G131400 , TraesCS2D02G133500 , TraesCS2D02G133500 , TraesCS2A02G131400 , TraesCS2D02G133500 , TraesCS2D02G133500 , TraesCS2A02G131400 , TraesCS2D02G133500 , TraesCS4A02G163400 , TraesCS2A02G131400 , TraesCS2A02G131400 , TraesCS4D02G163800 , TraesCS4B02G153200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G031400 OsFBL39 - F-box domain and LRR containing protein, expressed -
2 Sobic.001G420500 spotted leaf 11, putative, expressed -
3 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
4 Sobic.009G210500 expressed protein -
5 Sobic.010G277500 expressed protein -
6 Sobic.005G039500 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
7 Sobic.003G161000 powdery mildew resistance protein PM3F, putative, expressed -
8 Sobic.001G407200 SacI homology domain containing protein, expressed -
9 Sobic.008G150700 protein kinase domain containing protein, expressed -
10 Sobic.004G258700 PHD-finger family protein, expressed -
11 Sobic.001G533700 STE_PAK_Ste20_STLK.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
12 Sobic.006G246900 expressed protein -
13 Sobic.004G290800 GRAS family transcription factor(PubMedID : 23915383)@scarecrow, putative, expressed -
14 Sobic.002G144933 - -
15 Sobic.007G225800 NOL1/NOP2/sun family protein, putative, expressed K15335: NSUN2, tRNA (cytosine34-C5)-methyltransferase
16 Sobic.007G037900 oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed -
17 Sobic.008G063000 transcriptional corepressor SEUSS, putative, expressed -
18 Sobic.003G163100 expressed protein K08819: cyclin-dependent kinase 12/13
19 Sobic.003G101500 dnaJ domain containing protein, expressed -
20 Sobic.001G375700 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1


Gene co-expression network
sample Sobic002G402600 Sobic002G402600 Sobic002G031400 Sobic002G031400 Sobic002G402600--Sobic002G031400 Sobic001G420500 Sobic001G420500 Sobic002G402600--Sobic001G420500 Sobic009G260500 Sobic009G260500 Sobic002G402600--Sobic009G260500 Sobic009G210500 Sobic009G210500 Sobic002G402600--Sobic009G210500 Sobic010G277500 Sobic010G277500 Sobic002G402600--Sobic010G277500 Sobic005G039500 Sobic005G039500 Sobic002G402600--Sobic005G039500 Sobic003G161000 Sobic003G161000 Sobic002G402600--Sobic003G161000 Sobic001G407200 Sobic001G407200 Sobic002G402600--Sobic001G407200 Sobic008G150700 Sobic008G150700 Sobic002G402600--Sobic008G150700 Sobic002G031400--Sobic010G277500 Sobic007G161000 Sobic007G161000 Sobic002G031400--Sobic007G161000 Sobic001G035900 Sobic001G035900 Sobic002G031400--Sobic001G035900 Sobic003G254000 Sobic003G254000 Sobic002G031400--Sobic003G254000 Sobic008G011100 Sobic008G011100 Sobic002G031400--Sobic008G011100 Sobic010G176550 Sobic010G176550 Sobic002G031400--Sobic010G176550 Sobic003G280800 Sobic003G280800 Sobic002G031400--Sobic003G280800 Sobic002G031400--Sobic009G260500 Sobic004G258700 Sobic004G258700 Sobic002G031400--Sobic004G258700 Sobic001G420500--Sobic002G402600 Sobic001G083400 Sobic001G083400 Sobic001G420500--Sobic001G083400 Sobic009G191100 Sobic009G191100 Sobic001G420500--Sobic009G191100 Sobic001G486300 Sobic001G486300 Sobic001G420500--Sobic001G486300 Sobic001G204000 Sobic001G204000 Sobic001G420500--Sobic001G204000 Sobic001G375700 Sobic001G375700 Sobic001G420500--Sobic001G375700 Sobic005G023900 Sobic005G023900 Sobic001G420500--Sobic005G023900 Sobic001G420500--Sobic010G277500 Sobic010G016900 Sobic010G016900 Sobic001G420500--Sobic010G016900 Sobic001G219600 Sobic001G219600 Sobic009G260500--Sobic001G219600 Sobic004G009600 Sobic004G009600 Sobic009G260500--Sobic004G009600 Sobic009G260500--Sobic010G277500 Sobic008G009700 Sobic008G009700 Sobic009G260500--Sobic008G009700 Sobic010G139000 Sobic010G139000 Sobic009G260500--Sobic010G139000 Sobic008G028700 Sobic008G028700 Sobic009G260500--Sobic008G028700 Sobic009G040600 Sobic009G040600 Sobic009G260500--Sobic009G040600 Sobic002G309600 Sobic002G309600 Sobic009G260500--Sobic002G309600 Sobic001G311500 Sobic001G311500 Sobic009G260500--Sobic001G311500 Sobic002G320500 Sobic002G320500 Sobic009G210500--Sobic002G320500 Sobic007G065400 Sobic007G065400 Sobic009G210500--Sobic007G065400 Sobic002G157000 Sobic002G157000 Sobic009G210500--Sobic002G157000 Sobic006G032400 Sobic006G032400 Sobic009G210500--Sobic006G032400 Sobic003G268300 Sobic003G268300 Sobic009G210500--Sobic003G268300 Sobic009G210500--Sobic001G407200 Sobic007G167500 Sobic007G167500 Sobic009G210500--Sobic007G167500 Sobic001G090400 Sobic001G090400 Sobic009G210500--Sobic001G090400 Sobic004G145500 Sobic004G145500 Sobic009G210500--Sobic004G145500 Sobic004G208900 Sobic004G208900 Sobic010G277500--Sobic004G208900 Sobic006G209850 Sobic006G209850 Sobic010G277500--Sobic006G209850 Sobic010G277500--Sobic007G065400 Sobic010G277500--Sobic009G260500 Sobic010G277500--Sobic003G280800 Sobic010G277500--Sobic004G009600 Sobic010G277500--Sobic008G028700 Sobic010G277500--Sobic004G258700 Sobic006G216800 Sobic006G216800 Sobic010G277500--Sobic006G216800 Sobic005G039500--Sobic003G254000 Sobic001G067850 Sobic001G067850 Sobic005G039500--Sobic001G067850 Sobic003G113200 Sobic003G113200 Sobic005G039500--Sobic003G113200 Sobic001G261573 Sobic001G261573 Sobic005G039500--Sobic001G261573 Sobic003G429650 Sobic003G429650 Sobic005G039500--Sobic003G429650 Sobic009G212700 Sobic009G212700 Sobic005G039500--Sobic009G212700 Sobic002G243900 Sobic002G243900 Sobic005G039500--Sobic002G243900 Sobic004G035000 Sobic004G035000 Sobic005G039500--Sobic004G035000 Sobic007G037900 Sobic007G037900 Sobic005G039500--Sobic007G037900 Sobic004G001300 Sobic004G001300 Sobic003G161000--Sobic004G001300 Sobic003G161000--Sobic001G261573 Sobic003G161000--Sobic010G176550 Sobic003G161000--Sobic002G031400 Sobic003G442700 Sobic003G442700 Sobic003G161000--Sobic003G442700 Sobic003G003600 Sobic003G003600 Sobic003G161000--Sobic003G003600 Sobic003G149300 Sobic003G149300 Sobic003G161000--Sobic003G149300 Sobic003G161000--Sobic005G039500 Sobic003G161000--Sobic002G402600 Sobic001G407200--Sobic009G210500 Sobic008G162900 Sobic008G162900 Sobic001G407200--Sobic008G162900 Sobic005G013200 Sobic005G013200 Sobic001G407200--Sobic005G013200 Sobic002G144933 Sobic002G144933 Sobic001G407200--Sobic002G144933 Sobic010G129200 Sobic010G129200 Sobic001G407200--Sobic010G129200 Sobic001G407200--Sobic010G277500 Sobic009G126400 Sobic009G126400 Sobic001G407200--Sobic009G126400 Sobic004G084300 Sobic004G084300 Sobic001G407200--Sobic004G084300 Sobic008G047800 Sobic008G047800 Sobic001G407200--Sobic008G047800 Sobic008G150700--Sobic009G260500 Sobic008G150700--Sobic009G040600 Sobic002G143500 Sobic002G143500 Sobic008G150700--Sobic002G143500 Sobic008G150700--Sobic010G139000 Sobic001G334700 Sobic001G334700 Sobic008G150700--Sobic001G334700 Sobic009G247400 Sobic009G247400 Sobic008G150700--Sobic009G247400 Sobic008G150700--Sobic001G219600 Sobic001G111600 Sobic001G111600 Sobic008G150700--Sobic001G111600 Sobic008G150700--Sobic004G208900
Octagon: transcription factors


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