Gene annotation
Transcriptome id Sobic.001G420500.1
Synonym ATPUB13, Sb01g039580, PUB13
Functional annotation spotted leaf 11, putative, expressed
UniProt A0A1Z5SA52
Pfam PF04564 PF00514
Panther DB PTHR23315 PTHR23315:SF69
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G46510 : plant U-box 13
RAP-DB (Rice) LOC_Os03g16824.1 : spotted leaf 11, putative, expressed
MaizeGDB (Corn) Zm00025a001853 , Zm00025a001751
Brachypodium -
Barley HORVU4Hr1G059610.2 , HORVU4Hr1G059610.1 , HORVU4Hr1G059610.3
Wheat TraesCS4B02G206900 , TraesCS4A02G097700 , TraesCS4D02G207700 , TraesCS4D02G207700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G402600 pleckstrin homology domain-containing protein, putative, expressed -
2 Sobic.001G083400 expressed protein -
3 Sobic.009G191100 expressed protein -
4 Sobic.001G486300 phosphatidylinositol transfer, putative, expressed -
5 Sobic.001G204000 expressed protein -
6 Sobic.001G375700 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
7 Sobic.005G023900 expressed protein -
8 Sobic.010G277500 expressed protein -
9 Sobic.010G016900 calcium-dependent protein kinase isoform AK1, putative, expressed K13412: calcium-dependent protein kinase
10 Sobic.003G332800 GTPase-activating protein, putative, expressed -
11 Sobic.009G210500 expressed protein -
12 Sobic.002G121600 myb-like DNA-binding domain containing protein, expressed -
13 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
14 Sobic.004G027800 beta-amylase, putative, expressed -
15 Sobic.008G063000 transcriptional corepressor SEUSS, putative, expressed -
16 Sobic.004G258700 PHD-finger family protein, expressed -
17 Sobic.002G133400 CTR1-like protein kinase, putative, expressed K14510: serine/threonine-protein kinase CTR1
18 Sobic.002G380500 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12891: splicing factor, arginine/serine-rich 2
19 Sobic.001G533700 STE_PAK_Ste20_STLK.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
20 Sobic.004G112600 - -


Gene co-expression network
sample Sobic001G420500 Sobic001G420500 Sobic002G402600 Sobic002G402600 Sobic001G420500--Sobic002G402600 Sobic001G083400 Sobic001G083400 Sobic001G420500--Sobic001G083400 Sobic009G191100 Sobic009G191100 Sobic001G420500--Sobic009G191100 Sobic001G486300 Sobic001G486300 Sobic001G420500--Sobic001G486300 Sobic001G204000 Sobic001G204000 Sobic001G420500--Sobic001G204000 Sobic001G375700 Sobic001G375700 Sobic001G420500--Sobic001G375700 Sobic005G023900 Sobic005G023900 Sobic001G420500--Sobic005G023900 Sobic010G277500 Sobic010G277500 Sobic001G420500--Sobic010G277500 Sobic010G016900 Sobic010G016900 Sobic001G420500--Sobic010G016900 Sobic002G031400 Sobic002G031400 Sobic002G402600--Sobic002G031400 Sobic002G402600--Sobic001G420500 Sobic009G260500 Sobic009G260500 Sobic002G402600--Sobic009G260500 Sobic009G210500 Sobic009G210500 Sobic002G402600--Sobic009G210500 Sobic002G402600--Sobic010G277500 Sobic005G039500 Sobic005G039500 Sobic002G402600--Sobic005G039500 Sobic003G161000 Sobic003G161000 Sobic002G402600--Sobic003G161000 Sobic001G407200 Sobic001G407200 Sobic002G402600--Sobic001G407200 Sobic008G150700 Sobic008G150700 Sobic002G402600--Sobic008G150700 Sobic007G065400 Sobic007G065400 Sobic001G083400--Sobic007G065400 Sobic002G309600 Sobic002G309600 Sobic001G083400--Sobic002G309600 Sobic001G083400--Sobic009G210500 Sobic001G083400--Sobic010G277500 Sobic001G026200 Sobic001G026200 Sobic001G083400--Sobic001G026200 Sobic008G113100 Sobic008G113100 Sobic001G083400--Sobic008G113100 Sobic010G069100 Sobic010G069100 Sobic001G083400--Sobic010G069100 Sobic007G117400 Sobic007G117400 Sobic001G083400--Sobic007G117400 Sobic009G040600 Sobic009G040600 Sobic001G083400--Sobic009G040600 Sobic002G358500 Sobic002G358500 Sobic009G191100--Sobic002G358500 Sobic002G121600 Sobic002G121600 Sobic009G191100--Sobic002G121600 Sobic007G113800 Sobic007G113800 Sobic009G191100--Sobic007G113800 Sobic004G182900 Sobic004G182900 Sobic009G191100--Sobic004G182900 Sobic004G299000 Sobic004G299000 Sobic009G191100--Sobic004G299000 Sobic002G031600 Sobic002G031600 Sobic009G191100--Sobic002G031600 Sobic007G173200 Sobic007G173200 Sobic009G191100--Sobic007G173200 Sobic002G228700 Sobic002G228700 Sobic009G191100--Sobic002G228700 Sobic004G258700 Sobic004G258700 Sobic009G191100--Sobic004G258700 Sobic001G486300--Sobic005G023900 Sobic001G420200 Sobic001G420200 Sobic001G486300--Sobic001G420200 Sobic003G268300 Sobic003G268300 Sobic001G486300--Sobic003G268300 Sobic007G011400 Sobic007G011400 Sobic001G486300--Sobic007G011400 Sobic001G497300 Sobic001G497300 Sobic001G486300--Sobic001G497300 Sobic004G290800 Sobic004G290800 Sobic001G486300--Sobic004G290800 Sobic001G107500 Sobic001G107500 Sobic001G486300--Sobic001G107500 Sobic001G251700 Sobic001G251700 Sobic001G486300--Sobic001G251700 Sobic003G220200 Sobic003G220200 Sobic001G486300--Sobic003G220200 Sobic001G204000--Sobic001G083400 Sobic010G010700 Sobic010G010700 Sobic001G204000--Sobic010G010700 Sobic001G365900 Sobic001G365900 Sobic001G204000--Sobic001G365900 Sobic002G134200 Sobic002G134200 Sobic001G204000--Sobic002G134200 Sobic002G133400 Sobic002G133400 Sobic001G204000--Sobic002G133400 Sobic005G014300 Sobic005G014300 Sobic001G204000--Sobic005G014300 Sobic003G389200 Sobic003G389200 Sobic001G204000--Sobic003G389200 Sobic001G204000--Sobic002G309600 Sobic001G289600 Sobic001G289600 Sobic001G204000--Sobic001G289600 Sobic004G084300 Sobic004G084300 Sobic001G375700--Sobic004G084300 Sobic002G126500 Sobic002G126500 Sobic001G375700--Sobic002G126500 Sobic001G281600 Sobic001G281600 Sobic001G375700--Sobic001G281600 Sobic003G197800 Sobic003G197800 Sobic001G375700--Sobic003G197800 Sobic001G375700--Sobic001G107500 Sobic007G136800 Sobic007G136800 Sobic001G375700--Sobic007G136800 Sobic007G054400 Sobic007G054400 Sobic001G375700--Sobic007G054400 Sobic001G375700--Sobic008G113100 Sobic001G227200 Sobic001G227200 Sobic001G375700--Sobic001G227200 Sobic002G157000 Sobic002G157000 Sobic005G023900--Sobic002G157000 Sobic003G200200 Sobic003G200200 Sobic005G023900--Sobic003G200200 Sobic001G413500 Sobic001G413500 Sobic005G023900--Sobic001G413500 Sobic005G023900--Sobic001G497300 Sobic002G006900 Sobic002G006900 Sobic005G023900--Sobic002G006900 Sobic005G023900--Sobic001G486300 Sobic005G023900--Sobic003G268300 Sobic005G023900--Sobic007G065400 Sobic005G023900--Sobic009G210500 Sobic004G208900 Sobic004G208900 Sobic010G277500--Sobic004G208900 Sobic006G209850 Sobic006G209850 Sobic010G277500--Sobic006G209850 Sobic010G277500--Sobic007G065400 Sobic010G277500--Sobic009G260500 Sobic003G280800 Sobic003G280800 Sobic010G277500--Sobic003G280800 Sobic004G009600 Sobic004G009600 Sobic010G277500--Sobic004G009600 Sobic008G028700 Sobic008G028700 Sobic010G277500--Sobic008G028700 Sobic010G277500--Sobic004G258700 Sobic006G216800 Sobic006G216800 Sobic010G277500--Sobic006G216800 Sobic010G016900--Sobic001G420500 Sobic010G016900--Sobic004G182900 Sobic010G016900--Sobic009G191100 Sobic006G181000 Sobic006G181000 Sobic010G016900--Sobic006G181000 Sobic002G233900 Sobic002G233900 Sobic010G016900--Sobic002G233900 Sobic010G016900--Sobic002G402600 Sobic010G016900--Sobic001G375700 Sobic003G257700 Sobic003G257700 Sobic010G016900--Sobic003G257700 Sobic002G418200 Sobic002G418200 Sobic010G016900--Sobic002G418200
Octagon: transcription factors


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