Gene annotation
Transcriptome id Sobic.003G262200.1
Synonym BTS, EMB2454
Functional annotation E3 ubiquitin ligase, putative, expressed
UniProt C5XGU7
Pfam PF05495 PF01814
Panther DB PTHR21319 PTHR21319:SF0
NCBI CDD KOG1940; Zn-finger protein
KEGG Orthology K16276; K16276, zinc finger protein-like protein
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G18290 : zinc finger protein-related
RAP-DB (Rice) LOC_Os01g49470.2 : E3 ubiquitin ligase, putative, expressed
MaizeGDB (Corn) Zm00025a038856 , Zm00025a044468 , Zm00025a027973
Brachypodium KQK05031 , KQK09252
Barley HORVU3Hr1G064080.3 , HORVU3Hr1G064080.2 , HORVU3Hr1G064080.1 , HORVU3Hr1G064080.6 , HORVU3Hr1G064080.5 , HORVU3Hr1G064080.4
Wheat TraesCS1D02G382000 , TraesCS1D02G382000 , TraesCS3D02G262600 , TraesCS3D02G262600 , TraesCS3D02G262600 , TraesCS3D02G262600 , TraesCS3D02G262600 , TraesCS3D02G262600 , TraesCS3D02G262600 , TraesCS3D02G262600 , TraesCS3D02G262600 , TraesCS1A02G374800 , TraesCS1A02G374800 , TraesCS1A02G374800 , TraesCS3A02G262600 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS1B02G395000 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3A02G262700 , TraesCS3A02G262700 , TraesCS3A02G262700 , TraesCS3D02G262600 , TraesCS3A02G262700 , TraesCS3A02G262700 , TraesCS3A02G262700 , TraesCS3A02G262700 , TraesCS3A02G262700 , TraesCS3A02G262700 , TraesCS3A02G262700 , TraesCS3A02G262700
Populus PNT09616 , PNT09617


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G229300 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
2 Sobic.006G185100 ranBP1 domain containing protein, expressed K14295: NUP50, nuclear pore complex protein Nup50
3 Sobic.004G193700 ASC1, putative, expressed K04710: CERS1_2_3_4, ceramide synthetase
4 Sobic.003G119600 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.008G115900 mitochondrial carrier protein, putative, expressed -
6 Sobic.002G091600 methyltransferase, putative, expressed -
7 Sobic.003G253600 protein kinase domain containing protein, expressed -
8 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
9 Sobic.001G355800 methyltransferase, putative, expressed -
10 Sobic.006G092000 expressed protein K18172: COX assembly mitochondrial protein 2
11 Sobic.002G257750 - -
12 Sobic.002G325300 acyltransferase, putative, expressed K13506: GPAT3_4, AGPAT9, glycerol-3-phosphate O-acyltransferase 3/4
13 Sobic.002G121600 myb-like DNA-binding domain containing protein, expressed -
14 Sobic.004G140600 exonuclease, putative, expressed K13288: orn, REX2, oligoribonuclease
15 Sobic.003G176000 lipase family protein, putative, expressed -
16 Sobic.002G151300 - -
17 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
18 Sobic.005G167700 protein phosphatase 2C, putative, expressed -
19 Sobic.010G123600 WW domain containing protein, expressed -
20 Sobic.008G168300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tentative name(PubMedID : 31536532)@nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha


Gene co-expression network
sample Sobic003G262200 Sobic003G262200 Sobic003G229300 Sobic003G229300 Sobic003G262200--Sobic003G229300 Sobic006G185100 Sobic006G185100 Sobic003G262200--Sobic006G185100 Sobic004G193700 Sobic004G193700 Sobic003G262200--Sobic004G193700 Sobic003G119600 Sobic003G119600 Sobic003G262200--Sobic003G119600 Sobic008G115900 Sobic008G115900 Sobic003G262200--Sobic008G115900 Sobic002G091600 Sobic002G091600 Sobic003G262200--Sobic002G091600 Sobic003G253600 Sobic003G253600 Sobic003G262200--Sobic003G253600 Sobic003G155100 Sobic003G155100 Sobic003G262200--Sobic003G155100 Sobic001G355800 Sobic001G355800 Sobic003G262200--Sobic001G355800 Sobic003G191700 Sobic003G191700 Sobic003G229300--Sobic003G191700 Sobic010G176200 Sobic010G176200 Sobic003G229300--Sobic010G176200 Sobic006G133900 Sobic006G133900 Sobic003G229300--Sobic006G133900 Sobic004G042200 Sobic004G042200 Sobic003G229300--Sobic004G042200 Sobic001G169900 Sobic001G169900 Sobic003G229300--Sobic001G169900 Sobic003G229300--Sobic008G115900 Sobic007G198300 Sobic007G198300 Sobic003G229300--Sobic007G198300 Sobic003G229300--Sobic003G262200 Sobic003G222900 Sobic003G222900 Sobic003G229300--Sobic003G222900 Sobic002G325300 Sobic002G325300 Sobic006G185100--Sobic002G325300 Sobic006G185100--Sobic003G253600 Sobic002G257750 Sobic002G257750 Sobic006G185100--Sobic002G257750 Sobic004G140600 Sobic004G140600 Sobic006G185100--Sobic004G140600 Sobic001G392300 Sobic001G392300 Sobic006G185100--Sobic001G392300 Sobic005G059800 Sobic005G059800 Sobic006G185100--Sobic005G059800 Sobic006G185100--Sobic003G119600 Sobic001G080700 Sobic001G080700 Sobic006G185100--Sobic001G080700 Sobic008G070800 Sobic008G070800 Sobic006G185100--Sobic008G070800 Sobic004G193700--Sobic002G091600 Sobic004G193700--Sobic003G262200 Sobic004G193700--Sobic003G229300 Sobic006G092000 Sobic006G092000 Sobic004G193700--Sobic006G092000 Sobic004G193700--Sobic003G253600 Sobic004G193700--Sobic003G119600 Sobic004G193700--Sobic005G059800 Sobic001G085600 Sobic001G085600 Sobic004G193700--Sobic001G085600 Sobic004G193700--Sobic006G185100 Sobic009G201300 Sobic009G201300 Sobic003G119600--Sobic009G201300 Sobic001G439300 Sobic001G439300 Sobic003G119600--Sobic001G439300 Sobic003G119600--Sobic002G325300 Sobic004G244900 Sobic004G244900 Sobic003G119600--Sobic004G244900 Sobic003G119600--Sobic002G257750 Sobic005G106600 Sobic005G106600 Sobic003G119600--Sobic005G106600 Sobic004G356700 Sobic004G356700 Sobic003G119600--Sobic004G356700 Sobic003G119600--Sobic003G253600 Sobic003G354600 Sobic003G354600 Sobic003G119600--Sobic003G354600 Sobic007G136200 Sobic007G136200 Sobic008G115900--Sobic007G136200 Sobic006G158100 Sobic006G158100 Sobic008G115900--Sobic006G158100 Sobic006G130300 Sobic006G130300 Sobic008G115900--Sobic006G130300 Sobic006G207800 Sobic006G207800 Sobic008G115900--Sobic006G207800 Sobic004G356400 Sobic004G356400 Sobic008G115900--Sobic004G356400 Sobic001G017300 Sobic001G017300 Sobic008G115900--Sobic001G017300 Sobic010G153900 Sobic010G153900 Sobic008G115900--Sobic010G153900 Sobic008G115900--Sobic003G229300 Sobic001G491000 Sobic001G491000 Sobic008G115900--Sobic001G491000 Sobic002G091600--Sobic004G193700 Sobic003G110800 Sobic003G110800 Sobic002G091600--Sobic003G110800 Sobic002G091600--Sobic007G136200 Sobic002G091600--Sobic003G119600 Sobic001G097100 Sobic001G097100 Sobic002G091600--Sobic001G097100 Sobic001G530900 Sobic001G530900 Sobic002G091600--Sobic001G530900 Sobic005G084500 Sobic005G084500 Sobic002G091600--Sobic005G084500 Sobic009G215500 Sobic009G215500 Sobic002G091600--Sobic009G215500 Sobic002G091600--Sobic005G106600 Sobic003G253600--Sobic006G185100 Sobic003G253600--Sobic002G257750 Sobic003G253600--Sobic003G119600 Sobic002G344000 Sobic002G344000 Sobic003G253600--Sobic002G344000 Sobic001G332500 Sobic001G332500 Sobic003G253600--Sobic001G332500 Sobic003G316500 Sobic003G316500 Sobic003G253600--Sobic003G316500 Sobic003G253600--Sobic003G155100 Sobic003G253600--Sobic005G059800 Sobic008G044100 Sobic008G044100 Sobic003G253600--Sobic008G044100 Sobic008G001200 Sobic008G001200 Sobic003G155100--Sobic008G001200 Sobic006G219600 Sobic006G219600 Sobic003G155100--Sobic006G219600 Sobic010G206900 Sobic010G206900 Sobic003G155100--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic003G155100--Sobic001G230000 Sobic001G375100 Sobic001G375100 Sobic003G155100--Sobic001G375100 Sobic001G194200 Sobic001G194200 Sobic003G155100--Sobic001G194200 Sobic010G010700 Sobic010G010700 Sobic003G155100--Sobic010G010700 Sobic009G256400 Sobic009G256400 Sobic003G155100--Sobic009G256400 Sobic004G291900 Sobic004G291900 Sobic003G155100--Sobic004G291900 Sobic002G131200 Sobic002G131200 Sobic001G355800--Sobic002G131200 Sobic001G192000 Sobic001G192000 Sobic001G355800--Sobic001G192000 Sobic001G333100 Sobic001G333100 Sobic001G355800--Sobic001G333100 Sobic001G355800--Sobic009G201300 Sobic001G355800--Sobic003G354600 Sobic002G305000 Sobic002G305000 Sobic001G355800--Sobic002G305000 Sobic003G311900 Sobic003G311900 Sobic001G355800--Sobic003G311900 Sobic001G355800--Sobic003G119600 Sobic001G355800--Sobic002G091600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.