Gene annotation
Transcriptome id Sobic.009G168600.3,Sobic.009G168600.2
Synonym UGP3
Functional annotation low photochemical bleaching 1 protein, putative, expressed
UniProt A0A1B6P9E8
Pfam PF01704
Panther DB PTHR11952 PTHR11952:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008152; metabolic process


Orthologs (automatic annotation)
TAIR AT3G56040 : UDP-glucose pyrophosphorylase 3
RAP-DB (Rice) LOC_Os05g39230.1 : low photochemical bleaching 1 protein, putative, expressed
MaizeGDB (Corn) Zm00025a037763
Brachypodium PNT71073 , PNT71074 , KQK05815
Barley HORVU1Hr1G070740.28 , HORVU1Hr1G070740.29 , HORVU1Hr1G070740.23 , HORVU1Hr1G070740.20 , HORVU1Hr1G070740.21 , HORVU1Hr1G070740.27 , HORVU1Hr1G070740.24 , HORVU1Hr1G070740.25 , HORVU1Hr1G070740.22 , HORVU1Hr1G070740.44 , HORVU1Hr1G070740.45 , HORVU1Hr1G070740.40 , HORVU1Hr1G070740.41 , HORVU1Hr1G070740.42 , HORVU1Hr1G070740.43 , HORVU1Hr1G070740.26 , HORVU1Hr1G070740.31 , HORVU1Hr1G070740.13 , HORVU1Hr1G070740.12 , HORVU1Hr1G070740.11 , HORVU1Hr1G070740.10 , HORVU1Hr1G070740.17 , HORVU1Hr1G070740.16 , HORVU1Hr1G070740.15 , HORVU1Hr1G070740.14 , HORVU1Hr1G070740.19 , HORVU1Hr1G070740.18 , HORVU1Hr1G070740.3 , HORVU1Hr1G070740.2 , HORVU1Hr1G070740.7 , HORVU1Hr1G070740.6 , HORVU1Hr1G070740.5 , HORVU1Hr1G070740.4 , HORVU1Hr1G070740.9 , HORVU1Hr1G070740.8 , HORVU1Hr1G070740.35 , HORVU1Hr1G070740.34 , HORVU1Hr1G070740.37 , HORVU1Hr1G070740.36 , HORVU1Hr1G070740.30 , HORVU1Hr1G070740.33 , HORVU1Hr1G070740.32 , HORVU1Hr1G070740.39 , HORVU1Hr1G070740.38
Wheat TraesCS1A02G295200 , TraesCS1B02G304500
Populus PNT17327 , PNT17326 , PNT17325


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G096800 nnrU, putative, expressed K15744: zeta-carotene isomerase
2 Sobic.005G133700 CCB1, putative, expressed -
3 Sobic.002G406700 tyrosine-specific transport protein, putative, expressed K03834: tyrosine-specific transport protein
4 Sobic.009G148500 GTPase of unknown function domain containing protein, putative, expressed -
5 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
6 Sobic.003G372900 deoxynucleoside kinase family, putative, expressed -
7 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
8 Sobic.003G151500 CRS2-associated factor 2, chloroplast precursor, putative, expressed -
9 Sobic.004G238200 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
10 Sobic.002G272100 expressed protein -
11 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
12 Sobic.009G093900 rhodanese-like domain containing protein, putative, expressed -
13 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
14 Sobic.001G085600 ABC transporter, ATP-binding protein, putative, expressed -
15 Sobic.009G210200 Acid phosphatase/vanadium-dependent haloperoxidase-related protein(PubMedID : 26465154)@Divergent PAP2 family domain containing protein, expressed -
16 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
17 Sobic.001G025400 fumarylacetoacetase, putative, expressed K01557: acylpyruvate hydrolase
18 Sobic.006G197300 expressed protein -
19 Sobic.004G011300 S1 RNA binding domain containing protein, expressed -
20 Sobic.008G073100 uncharacterized protein ycf45, putative, expressed -


Gene co-expression network
sample Sobic009G168600 Sobic009G168600 Sobic008G096800 Sobic008G096800 Sobic009G168600--Sobic008G096800 Sobic005G133700 Sobic005G133700 Sobic009G168600--Sobic005G133700 Sobic002G406700 Sobic002G406700 Sobic009G168600--Sobic002G406700 Sobic009G148500 Sobic009G148500 Sobic009G168600--Sobic009G148500 Sobic001G083100 Sobic001G083100 Sobic009G168600--Sobic001G083100 Sobic003G372900 Sobic003G372900 Sobic009G168600--Sobic003G372900 Sobic006G055800 Sobic006G055800 Sobic009G168600--Sobic006G055800 Sobic003G151500 Sobic003G151500 Sobic009G168600--Sobic003G151500 Sobic004G238200 Sobic004G238200 Sobic009G168600--Sobic004G238200 Sobic008G096800--Sobic003G372900 Sobic005G002900 Sobic005G002900 Sobic008G096800--Sobic005G002900 Sobic002G321901 Sobic002G321901 Sobic008G096800--Sobic002G321901 Sobic001G500600 Sobic001G500600 Sobic008G096800--Sobic001G500600 Sobic003G287900 Sobic003G287900 Sobic008G096800--Sobic003G287900 Sobic008G096800--Sobic001G083100 Sobic003G141100 Sobic003G141100 Sobic008G096800--Sobic003G141100 Sobic008G096800--Sobic009G168600 Sobic003G232700 Sobic003G232700 Sobic008G096800--Sobic003G232700 Sobic006G197300 Sobic006G197300 Sobic005G133700--Sobic006G197300 Sobic004G336200 Sobic004G336200 Sobic005G133700--Sobic004G336200 Sobic005G133700--Sobic009G168600 Sobic008G188600 Sobic008G188600 Sobic005G133700--Sobic008G188600 Sobic005G133700--Sobic003G232700 Sobic002G200900 Sobic002G200900 Sobic005G133700--Sobic002G200900 Sobic002G272100 Sobic002G272100 Sobic005G133700--Sobic002G272100 Sobic005G133700--Sobic002G406700 Sobic006G067400 Sobic006G067400 Sobic005G133700--Sobic006G067400 Sobic002G406700--Sobic004G336200 Sobic008G073100 Sobic008G073100 Sobic002G406700--Sobic008G073100 Sobic002G406700--Sobic003G151500 Sobic002G406700--Sobic003G372900 Sobic002G406700--Sobic002G272100 Sobic003G094350 Sobic003G094350 Sobic002G406700--Sobic003G094350 Sobic003G301300 Sobic003G301300 Sobic002G406700--Sobic003G301300 Sobic002G406700--Sobic009G148500 Sobic003G077400 Sobic003G077400 Sobic002G406700--Sobic003G077400 Sobic009G148500--Sobic001G083100 Sobic009G148500--Sobic003G151500 Sobic009G148500--Sobic008G073100 Sobic009G148500--Sobic006G055800 Sobic001G126300 Sobic001G126300 Sobic009G148500--Sobic001G126300 Sobic004G011300 Sobic004G011300 Sobic009G148500--Sobic004G011300 Sobic009G148500--Sobic005G002900 Sobic005G110400 Sobic005G110400 Sobic009G148500--Sobic005G110400 Sobic009G148500--Sobic001G500600 Sobic001G083100--Sobic005G002900 Sobic001G083100--Sobic009G148500 Sobic008G039600 Sobic008G039600 Sobic001G083100--Sobic008G039600 Sobic001G469933 Sobic001G469933 Sobic001G083100--Sobic001G469933 Sobic001G083100--Sobic006G055800 Sobic001G083100--Sobic002G272100 Sobic001G083100--Sobic003G372900 Sobic001G054100 Sobic001G054100 Sobic001G083100--Sobic001G054100 Sobic001G083100--Sobic008G073100 Sobic003G372900--Sobic001G500600 Sobic003G372900--Sobic001G054100 Sobic003G372900--Sobic001G083100 Sobic003G372900--Sobic002G406700 Sobic003G372900--Sobic003G141100 Sobic003G372900--Sobic003G094350 Sobic003G372900--Sobic004G336200 Sobic004G333400 Sobic004G333400 Sobic003G372900--Sobic004G333400 Sobic006G280800 Sobic006G280800 Sobic003G372900--Sobic006G280800 Sobic003G432500 Sobic003G432500 Sobic006G055800--Sobic003G432500 Sobic003G324700 Sobic003G324700 Sobic006G055800--Sobic003G324700 Sobic006G055800--Sobic005G002900 Sobic006G055800--Sobic001G469933 Sobic001G368500 Sobic001G368500 Sobic006G055800--Sobic001G368500 Sobic006G055800--Sobic009G148500 Sobic002G152800 Sobic002G152800 Sobic006G055800--Sobic002G152800 Sobic006G055800--Sobic001G083100 Sobic006G055800--Sobic005G110400 Sobic003G151500--Sobic009G148500 Sobic003G151500--Sobic002G406700 Sobic003G151500--Sobic003G432500 Sobic003G151500--Sobic004G336200 Sobic003G151500--Sobic001G126300 Sobic003G151500--Sobic005G110400 Sobic003G151500--Sobic001G083100 Sobic003G151500--Sobic003G372900 Sobic003G151500--Sobic008G073100 Sobic004G238200--Sobic003G232700 Sobic004G207400 Sobic004G207400 Sobic004G238200--Sobic004G207400 Sobic004G238200--Sobic001G500600 Sobic005G084500 Sobic005G084500 Sobic004G238200--Sobic005G084500 Sobic001G516901 Sobic001G516901 Sobic004G238200--Sobic001G516901 Sobic002G072400 Sobic002G072400 Sobic004G238200--Sobic002G072400 Sobic007G005400 Sobic007G005400 Sobic004G238200--Sobic007G005400 Sobic004G238200--Sobic006G197300 Sobic006G232600 Sobic006G232600 Sobic004G238200--Sobic006G232600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.