Gene annotation
Transcriptome id Sobic.001G009600.1
Synonym Sb01g000940
Functional annotation ATPase, AFG1 family domain containing protein, expressed
UniProt C5WS19
Pfam PF03969
Panther DB PTHR12169 PTHR12169:SF5
NCBI CDD KOG2383; Predicted ATPase
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT2G25530 : AFG1-like ATPase family protein
RAP-DB (Rice) LOC_Os03g63500.1 : ATPase, AFG1 family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a009066
Brachypodium KQK12070
Barley HORVU3Hr1G010290.5 , HORVU3Hr1G010290.4 , HORVU3Hr1G010290.7 , HORVU3Hr1G010290.6 , HORVU3Hr1G010290.1 , HORVU3Hr1G010290.3 , HORVU3Hr1G010290.2 , HORVU3Hr1G010290.9 , HORVU3Hr1G010290.8 , HORVU3Hr1G010290.11 , HORVU3Hr1G010290.10
Wheat TraesCS3D02G053700 , TraesCS6B02G373500 , TraesCS3A02G054200 , TraesCS3A02G054200 , TraesCS4A02G188600
Populus -


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cDNA sequences
Sobic.001G009600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G393700 expressed protein -
2 Sobic.003G402000 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
3 Sobic.002G170200 zinc finger family protein, putative, expressed -
4 Sobic.004G198600 cyclin G-associated kinase, putative, expressed K08853: AP2-associated kinase
5 Sobic.006G029700 FAD dependent oxidoreductase domain containing protein, expressed K00111: glpA, glycerol-3-phosphate dehydrogenase
6 Sobic.010G155600 DJ-1 family protein, putative, expressed K03152: protein deglycase
7 Sobic.002G388000 SNARE associated Golgi protein, putative, expressed -
8 Sobic.005G198000 armadillo/beta-catenin-like repeat family protein, expressed -
9 Sobic.009G107300 3\'-5\' exonuclease, putative, expressed -
10 Sobic.001G532600 pyridoxamine 5\'-phosphate oxidase family protein, putative, expressed -
11 Sobic.003G369900 expressed protein -
12 Sobic.001G447200 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
13 Sobic.004G240400 tRNA synthetase, putative, expressed -
14 Sobic.001G021000 nicotinate phosphoribosyltransferase family domain containing protein, expressed K00763: pncB, nicotinate phosphoribosyltransferase
15 Sobic.001G239500 starch synthase, putative, expressed K00703: starch synthase
16 Sobic.009G192300 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
17 Sobic.002G181600 expressed protein -
18 Sobic.003G176000 lipase family protein, putative, expressed -
19 Sobic.006G056700 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
20 Sobic.010G068700 transporter family protein, putative, expressed K15281: solute carrier family 35


Gene co-expression network
sample Sobic001G009600 Sobic001G009600 Sobic002G393700 Sobic002G393700 Sobic001G009600--Sobic002G393700 Sobic003G402000 Sobic003G402000 Sobic001G009600--Sobic003G402000 Sobic002G170200 Sobic002G170200 Sobic001G009600--Sobic002G170200 Sobic004G198600 Sobic004G198600 Sobic001G009600--Sobic004G198600 Sobic006G029700 Sobic006G029700 Sobic001G009600--Sobic006G029700 Sobic010G155600 Sobic010G155600 Sobic001G009600--Sobic010G155600 Sobic002G388000 Sobic002G388000 Sobic001G009600--Sobic002G388000 Sobic005G198000 Sobic005G198000 Sobic001G009600--Sobic005G198000 Sobic009G107300 Sobic009G107300 Sobic001G009600--Sobic009G107300 Sobic002G393700--Sobic002G170200 Sobic001G435400 Sobic001G435400 Sobic002G393700--Sobic001G435400 Sobic006G261700 Sobic006G261700 Sobic002G393700--Sobic006G261700 Sobic007G079400 Sobic007G079400 Sobic002G393700--Sobic007G079400 Sobic006G127600 Sobic006G127600 Sobic002G393700--Sobic006G127600 Sobic003G176000 Sobic003G176000 Sobic002G393700--Sobic003G176000 Sobic002G393700--Sobic001G009600 Sobic004G018000 Sobic004G018000 Sobic002G393700--Sobic004G018000 Sobic001G412100 Sobic001G412100 Sobic002G393700--Sobic001G412100 Sobic001G020100 Sobic001G020100 Sobic003G402000--Sobic001G020100 Sobic004G268000 Sobic004G268000 Sobic003G402000--Sobic004G268000 Sobic008G091400 Sobic008G091400 Sobic003G402000--Sobic008G091400 SobicK031800 SobicK031800 Sobic003G402000--SobicK031800 Sobic009G140800 Sobic009G140800 Sobic003G402000--Sobic009G140800 Sobic009G063100 Sobic009G063100 Sobic003G402000--Sobic009G063100 Sobic008G188600 Sobic008G188600 Sobic003G402000--Sobic008G188600 Sobic007G181400 Sobic007G181400 Sobic003G402000--Sobic007G181400 Sobic007G136200 Sobic007G136200 Sobic003G402000--Sobic007G136200 Sobic004G131800 Sobic004G131800 Sobic002G170200--Sobic004G131800 Sobic001G283600 Sobic001G283600 Sobic002G170200--Sobic001G283600 Sobic002G170200--Sobic003G176000 Sobic002G170200--Sobic005G198000 Sobic006G056700 Sobic006G056700 Sobic002G170200--Sobic006G056700 Sobic002G170200--Sobic006G127600 Sobic006G039400 Sobic006G039400 Sobic002G170200--Sobic006G039400 Sobic007G162100 Sobic007G162100 Sobic002G170200--Sobic007G162100 Sobic006G261400 Sobic006G261400 Sobic002G170200--Sobic006G261400 Sobic002G079000 Sobic002G079000 Sobic004G198600--Sobic002G079000 Sobic004G240400 Sobic004G240400 Sobic004G198600--Sobic004G240400 Sobic010G068700 Sobic010G068700 Sobic004G198600--Sobic010G068700 Sobic007G087000 Sobic007G087000 Sobic004G198600--Sobic007G087000 Sobic004G198600--Sobic009G107300 Sobic001G014200 Sobic001G014200 Sobic004G198600--Sobic001G014200 Sobic002G355800 Sobic002G355800 Sobic004G198600--Sobic002G355800 Sobic010G169900 Sobic010G169900 Sobic004G198600--Sobic010G169900 Sobic008G116700 Sobic008G116700 Sobic004G198600--Sobic008G116700 Sobic002G112700 Sobic002G112700 Sobic006G029700--Sobic002G112700 Sobic002G408200 Sobic002G408200 Sobic006G029700--Sobic002G408200 Sobic009G040600 Sobic009G040600 Sobic006G029700--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic006G029700--Sobic007G011300 Sobic002G154000 Sobic002G154000 Sobic006G029700--Sobic002G154000 Sobic006G116100 Sobic006G116100 Sobic006G029700--Sobic006G116100 Sobic008G113100 Sobic008G113100 Sobic006G029700--Sobic008G113100 Sobic007G218000 Sobic007G218000 Sobic006G029700--Sobic007G218000 Sobic008G047800 Sobic008G047800 Sobic006G029700--Sobic008G047800 Sobic006G237000 Sobic006G237000 Sobic010G155600--Sobic006G237000 Sobic005G031000 Sobic005G031000 Sobic010G155600--Sobic005G031000 Sobic008G097600 Sobic008G097600 Sobic010G155600--Sobic008G097600 Sobic002G125800 Sobic002G125800 Sobic010G155600--Sobic002G125800 Sobic001G434700 Sobic001G434700 Sobic010G155600--Sobic001G434700 Sobic004G275600 Sobic004G275600 Sobic010G155600--Sobic004G275600 Sobic001G537500 Sobic001G537500 Sobic010G155600--Sobic001G537500 Sobic004G356200 Sobic004G356200 Sobic010G155600--Sobic004G356200 Sobic004G037200 Sobic004G037200 Sobic010G155600--Sobic004G037200 Sobic009G156100 Sobic009G156100 Sobic002G388000--Sobic009G156100 Sobic005G023800 Sobic005G023800 Sobic002G388000--Sobic005G023800 Sobic008G011300 Sobic008G011300 Sobic002G388000--Sobic008G011300 Sobic002G388000--Sobic008G116700 Sobic005G111700 Sobic005G111700 Sobic002G388000--Sobic005G111700 Sobic003G272700 Sobic003G272700 Sobic002G388000--Sobic003G272700 Sobic002G388000--Sobic009G107300 Sobic001G464400 Sobic001G464400 Sobic002G388000--Sobic001G464400 Sobic002G388000--Sobic010G068700 Sobic005G198000--Sobic002G170200 Sobic004G355700 Sobic004G355700 Sobic005G198000--Sobic004G355700 Sobic005G198000--Sobic002G408200 Sobic001G085600 Sobic001G085600 Sobic005G198000--Sobic001G085600 Sobic008G168300 Sobic008G168300 Sobic005G198000--Sobic008G168300 Sobic002G121600 Sobic002G121600 Sobic005G198000--Sobic002G121600 Sobic005G198000--Sobic001G283600 Sobic010G243900 Sobic010G243900 Sobic005G198000--Sobic010G243900 Sobic010G032900 Sobic010G032900 Sobic005G198000--Sobic010G032900 Sobic009G228000 Sobic009G228000 Sobic009G107300--Sobic009G228000 Sobic009G107300--Sobic007G087000 Sobic009G107300--Sobic004G240400 Sobic009G107300--Sobic008G116700 Sobic003G043000 Sobic003G043000 Sobic009G107300--Sobic003G043000 Sobic009G107300--Sobic004G198600 Sobic003G120300 Sobic003G120300 Sobic009G107300--Sobic003G120300 Sobic003G181700 Sobic003G181700 Sobic009G107300--Sobic003G181700 Sobic001G156900 Sobic001G156900 Sobic009G107300--Sobic001G156900
Octagon: transcription factors


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