Gene annotation
Transcriptome id Sobic.006G024700.1
Synonym PUM3, Sb06g002250, APUM3
Functional annotation pumilio-family RNA binding repeat containing protein, expressed
UniProt A0A1B6PJL9
Pfam PF00806
Panther DB PTHR12537 PTHR12537:SF62
NCBI CDD KOG1488; Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily)
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT2G29140 : pumilio 3
RAP-DB (Rice) LOC_Os04g12480.1 : pumilio-family RNA binding repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a012451 , Zm00025a055626
Brachypodium KQJ81761
Barley HORVU3Hr1G086020.1 , HORVU3Hr1G086020.3 , HORVU3Hr1G086020.2
Wheat TraesCS3D02G355400 , TraesCS3D02G355400 , TraesCS3D02G355400 , TraesCS3D02G355400 , TraesCS3D02G355400 , TraesCS3B02G394100 , TraesCS3B02G394100 , TraesCS3B02G394100 , TraesCS3B02G394100 , TraesCS3B02G394100 , TraesCS3B02G394100 , TraesCS3B02G394100 , TraesCS3A02G361700 , TraesCS3A02G361700 , TraesCS3A02G361700 , TraesCS3A02G361700 , TraesCS3A02G361700 , TraesCS3A02G361700 , TraesCS3A02G361700 , TraesCS3A02G361700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G215700 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
2 Sobic.004G034300 transducin family protein, putative, expressed -
3 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
4 Sobic.003G388900 PPR repeat domain containing protein, putative, expressed -
5 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
6 Sobic.005G163700 T-complex protein, putative, expressed K09500: T-complex protein 1 subunit theta
7 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
8 Sobic.004G212100 PPR repeat domain containing protein, putative, expressed -
9 Sobic.004G336300 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
10 Sobic.003G173400 tetratricopeptide repeat protein 5, putative, expressed -
11 Sobic.001G368100 expressed protein K18158: nuclear control of ATPase protein 2
12 Sobic.008G111600 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
13 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
14 Sobic.003G008600 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed K15029: translation initiation factor 3 subunit L
15 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
16 Sobic.002G070600 coatomer subunit gamma-2, putative, expressed K17267: coatomer subunit gamma
17 Sobic.001G011000 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
18 Sobic.008G072200 coatomer subunit delta, putative, expressed -
19 Sobic.009G049200 Spc97 / Spc98 family protein, putative, expressed K16571: TUBGCP4, gamma-tubulin complex component 4
20 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase


Gene co-expression network
sample Sobic006G024700 Sobic006G024700 Sobic004G215700 Sobic004G215700 Sobic006G024700--Sobic004G215700 Sobic004G034300 Sobic004G034300 Sobic006G024700--Sobic004G034300 Sobic002G423500 Sobic002G423500 Sobic006G024700--Sobic002G423500 Sobic003G388900 Sobic003G388900 Sobic006G024700--Sobic003G388900 Sobic001G460500 Sobic001G460500 Sobic006G024700--Sobic001G460500 Sobic005G163700 Sobic005G163700 Sobic006G024700--Sobic005G163700 Sobic009G041800 Sobic009G041800 Sobic006G024700--Sobic009G041800 Sobic004G212100 Sobic004G212100 Sobic006G024700--Sobic004G212100 Sobic004G336300 Sobic004G336300 Sobic006G024700--Sobic004G336300 Sobic004G215700--Sobic002G423500 Sobic004G326600 Sobic004G326600 Sobic004G215700--Sobic004G326600 Sobic004G215700--Sobic005G163700 Sobic004G215700--Sobic006G024700 Sobic004G047200 Sobic004G047200 Sobic004G215700--Sobic004G047200 Sobic004G215700--Sobic001G460500 Sobic003G008600 Sobic003G008600 Sobic004G215700--Sobic003G008600 Sobic004G215700--Sobic003G388900 Sobic004G215700--Sobic004G212100 Sobic004G034300--Sobic004G336300 Sobic010G178600 Sobic010G178600 Sobic004G034300--Sobic010G178600 Sobic002G070600 Sobic002G070600 Sobic004G034300--Sobic002G070600 Sobic008G072200 Sobic008G072200 Sobic004G034300--Sobic008G072200 Sobic005G059500 Sobic005G059500 Sobic004G034300--Sobic005G059500 Sobic009G118900 Sobic009G118900 Sobic004G034300--Sobic009G118900 Sobic003G334700 Sobic003G334700 Sobic004G034300--Sobic003G334700 Sobic004G034300--Sobic004G212100 Sobic001G012900 Sobic001G012900 Sobic004G034300--Sobic001G012900 Sobic002G423500--Sobic005G163700 Sobic002G423500--Sobic004G047200 Sobic002G014400 Sobic002G014400 Sobic002G423500--Sobic002G014400 Sobic002G423500--Sobic001G460500 Sobic002G423500--Sobic004G326600 Sobic002G423500--Sobic004G215700 Sobic001G522000 Sobic001G522000 Sobic002G423500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G423500--Sobic006G041100 Sobic001G467100 Sobic001G467100 Sobic002G423500--Sobic001G467100 Sobic002G367800 Sobic002G367800 Sobic003G388900--Sobic002G367800 Sobic002G402500 Sobic002G402500 Sobic003G388900--Sobic002G402500 Sobic003G388900--Sobic001G522000 Sobic003G202100 Sobic003G202100 Sobic003G388900--Sobic003G202100 Sobic003G388900--Sobic004G212100 Sobic001G304000 Sobic001G304000 Sobic003G388900--Sobic001G304000 Sobic002G295900 Sobic002G295900 Sobic003G388900--Sobic002G295900 Sobic001G413100 Sobic001G413100 Sobic003G388900--Sobic001G413100 Sobic003G205400 Sobic003G205400 Sobic003G388900--Sobic003G205400 Sobic001G460500--Sobic005G163700 Sobic001G460500--Sobic002G423500 Sobic001G460500--Sobic002G014400 Sobic004G208500 Sobic004G208500 Sobic001G460500--Sobic004G208500 Sobic010G081700 Sobic010G081700 Sobic001G460500--Sobic010G081700 Sobic001G460500--Sobic004G047200 Sobic002G412700 Sobic002G412700 Sobic001G460500--Sobic002G412700 Sobic001G251600 Sobic001G251600 Sobic001G460500--Sobic001G251600 Sobic003G099300 Sobic003G099300 Sobic001G460500--Sobic003G099300 Sobic005G163700--Sobic001G460500 Sobic005G163700--Sobic002G423500 Sobic005G163700--Sobic002G014400 Sobic005G163700--Sobic004G047200 Sobic005G163700--Sobic004G215700 Sobic005G163700--Sobic004G326600 Sobic005G163700--Sobic001G467100 Sobic005G163700--Sobic004G208500 Sobic005G163700--Sobic002G412700 Sobic003G130000 Sobic003G130000 Sobic009G041800--Sobic003G130000 Sobic009G041800--Sobic004G212100 Sobic001G011000 Sobic001G011000 Sobic009G041800--Sobic001G011000 Sobic009G041800--Sobic002G367800 Sobic001G167500 Sobic001G167500 Sobic009G041800--Sobic001G167500 Sobic009G041800--Sobic001G413100 Sobic001G268300 Sobic001G268300 Sobic009G041800--Sobic001G268300 Sobic003G113400 Sobic003G113400 Sobic009G041800--Sobic003G113400 Sobic010G134100 Sobic010G134100 Sobic009G041800--Sobic010G134100 Sobic004G212100--Sobic002G367800 Sobic004G212100--Sobic001G011000 Sobic004G212100--Sobic009G041800 Sobic004G212100--Sobic003G388900 Sobic002G070300 Sobic002G070300 Sobic004G212100--Sobic002G070300 Sobic001G161700 Sobic001G161700 Sobic004G212100--Sobic001G161700 Sobic004G212100--Sobic004G034300 Sobic004G212100--Sobic001G522000 Sobic001G490500 Sobic001G490500 Sobic004G212100--Sobic001G490500 Sobic004G336300--Sobic008G072200 Sobic004G336300--Sobic004G034300 Sobic004G336300--Sobic002G070600 Sobic004G336300--Sobic009G118900 Sobic001G117800 Sobic001G117800 Sobic004G336300--Sobic001G117800 Sobic004G336300--Sobic003G334700 Sobic004G174700 Sobic004G174700 Sobic004G336300--Sobic004G174700 Sobic004G336300--Sobic010G178600 Sobic001G437400 Sobic001G437400 Sobic004G336300--Sobic001G437400
Octagon: transcription factors


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