Gene annotation
Transcriptome id Sobic.003G173400.5,Sobic.003G173400.3,Sobic.003G173400.1,Sobic.003G173400.2,Sobic.003G173400.4
Synonym Sb03g020430
Functional annotation tetratricopeptide repeat protein 5, putative, expressed
UniProt A0A1W0VXT0 , A0A1B6Q3U1 , C5XLH3 , A0A1B6Q3U0
Pfam PF13414 PF16669 PF13414
Panther DB PTHR26312 PTHR26312:SF52
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G04240 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g32184.1 : tetratricopeptide repeat protein 5, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK04477
Barley HORVU3Hr1G043530.2 , HORVU3Hr1G043530.12 , HORVU3Hr1G043530.13 , HORVU3Hr1G043530.10 , HORVU3Hr1G043530.11 , HORVU3Hr1G043530.4 , HORVU3Hr1G043530.5 , HORVU3Hr1G043530.6 , HORVU3Hr1G043530.7 , HORVU3Hr1G043530.1 , HORVU3Hr1G043530.3 , HORVU3Hr1G043530.8 , HORVU3Hr1G043530.9
Wheat TraesCS3D02G198900 , TraesCS3B02G227800 , TraesCS3A02G195900
Populus -


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cDNA sequences
Sobic.003G173400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
2 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
3 Sobic.008G111600 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
4 Sobic.007G047600 expressed protein -
5 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
6 Sobic.009G049200 Spc97 / Spc98 family protein, putative, expressed K16571: TUBGCP4, gamma-tubulin complex component 4
7 Sobic.001G533100 GHMP kinases ATP-binding protein, putative, expressed K05305: fucokinase
8 Sobic.001G140700 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
9 Sobic.004G001600 kinesin motor domain containing protein, putative, expressed K10401: kinesin family member 18/19
10 Sobic.008G092800 expressed protein -
11 Sobic.003G135500 sugar transporter superfamily, putative, expressed -
12 Sobic.004G336300 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
13 Sobic.006G071628 - -
14 Sobic.002G137601 - -
15 Sobic.004G034300 transducin family protein, putative, expressed -
16 Sobic.010G098600 heat shock protein DnaJ, putative, expressed -
17 Sobic.003G144000 pentatricopeptide, putative, expressed -
18 Sobic.007G031300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
19 Sobic.006G024700 pumilio-family RNA binding repeat containing protein, expressed -
20 Sobic.009G052100 tubulin/FtsZ domain containing protein, putative, expressed K10389: tubulin gamma


Gene co-expression network
sample Sobic003G173400 Sobic003G173400 Sobic002G362200 Sobic002G362200 Sobic003G173400--Sobic002G362200 Sobic002G426100 Sobic002G426100 Sobic003G173400--Sobic002G426100 Sobic008G111600 Sobic008G111600 Sobic003G173400--Sobic008G111600 Sobic007G047600 Sobic007G047600 Sobic003G173400--Sobic007G047600 Sobic006G181800 Sobic006G181800 Sobic003G173400--Sobic006G181800 Sobic009G049200 Sobic009G049200 Sobic003G173400--Sobic009G049200 Sobic001G533100 Sobic001G533100 Sobic003G173400--Sobic001G533100 Sobic001G140700 Sobic001G140700 Sobic003G173400--Sobic001G140700 Sobic004G001600 Sobic004G001600 Sobic003G173400--Sobic004G001600 Sobic002G362200--Sobic008G111600 Sobic010G252700 Sobic010G252700 Sobic002G362200--Sobic010G252700 Sobic008G090000 Sobic008G090000 Sobic002G362200--Sobic008G090000 Sobic008G179000 Sobic008G179000 Sobic002G362200--Sobic008G179000 Sobic002G362200--Sobic002G426100 Sobic001G537400 Sobic001G537400 Sobic002G362200--Sobic001G537400 Sobic001G268300 Sobic001G268300 Sobic002G362200--Sobic001G268300 Sobic008G031200 Sobic008G031200 Sobic002G362200--Sobic008G031200 Sobic003G147500 Sobic003G147500 Sobic002G362200--Sobic003G147500 Sobic009G120400 Sobic009G120400 Sobic002G426100--Sobic009G120400 Sobic002G426100--Sobic008G111600 Sobic002G426100--Sobic006G181800 Sobic002G078100 Sobic002G078100 Sobic002G426100--Sobic002G078100 Sobic002G043000 Sobic002G043000 Sobic002G426100--Sobic002G043000 Sobic006G017800 Sobic006G017800 Sobic002G426100--Sobic006G017800 Sobic002G066800 Sobic002G066800 Sobic002G426100--Sobic002G066800 Sobic007G186400 Sobic007G186400 Sobic002G426100--Sobic007G186400 Sobic004G129500 Sobic004G129500 Sobic002G426100--Sobic004G129500 Sobic008G111600--Sobic002G426100 Sobic008G111600--Sobic006G181800 Sobic008G111600--Sobic002G362200 Sobic004G215900 Sobic004G215900 Sobic008G111600--Sobic004G215900 Sobic008G111600--Sobic002G043000 Sobic001G024000 Sobic001G024000 Sobic008G111600--Sobic001G024000 Sobic008G111600--Sobic002G078100 Sobic002G003300 Sobic002G003300 Sobic008G111600--Sobic002G003300 Sobic003G144000 Sobic003G144000 Sobic008G111600--Sobic003G144000 Sobic002G412700 Sobic002G412700 Sobic007G047600--Sobic002G412700 Sobic007G145400 Sobic007G145400 Sobic007G047600--Sobic007G145400 Sobic008G092800 Sobic008G092800 Sobic007G047600--Sobic008G092800 Sobic004G356200 Sobic004G356200 Sobic007G047600--Sobic004G356200 Sobic003G360300 Sobic003G360300 Sobic007G047600--Sobic003G360300 Sobic008G080500 Sobic008G080500 Sobic007G047600--Sobic008G080500 Sobic006G280100 Sobic006G280100 Sobic007G047600--Sobic006G280100 Sobic002G119600 Sobic002G119600 Sobic007G047600--Sobic002G119600 Sobic001G467100 Sobic001G467100 Sobic007G047600--Sobic001G467100 Sobic006G181800--Sobic008G111600 Sobic004G038100 Sobic004G038100 Sobic006G181800--Sobic004G038100 Sobic006G181800--Sobic002G426100 Sobic006G033101 Sobic006G033101 Sobic006G181800--Sobic006G033101 Sobic002G371600 Sobic002G371600 Sobic006G181800--Sobic002G371600 Sobic006G181800--Sobic002G043000 Sobic006G181800--Sobic008G092800 Sobic006G236000 Sobic006G236000 Sobic006G181800--Sobic006G236000 Sobic010G188000 Sobic010G188000 Sobic006G181800--Sobic010G188000 Sobic009G052100 Sobic009G052100 Sobic009G049200--Sobic009G052100 Sobic001G507200 Sobic001G507200 Sobic009G049200--Sobic001G507200 Sobic001G143600 Sobic001G143600 Sobic009G049200--Sobic001G143600 Sobic003G250900 Sobic003G250900 Sobic009G049200--Sobic003G250900 Sobic010G250800 Sobic010G250800 Sobic009G049200--Sobic010G250800 Sobic004G231200 Sobic004G231200 Sobic009G049200--Sobic004G231200 Sobic004G307900 Sobic004G307900 Sobic009G049200--Sobic004G307900 Sobic003G423600 Sobic003G423600 Sobic009G049200--Sobic003G423600 Sobic008G015200 Sobic008G015200 Sobic009G049200--Sobic008G015200 Sobic002G125800 Sobic002G125800 Sobic001G533100--Sobic002G125800 Sobic005G031000 Sobic005G031000 Sobic001G533100--Sobic005G031000 Sobic004G034300 Sobic004G034300 Sobic001G533100--Sobic004G034300 Sobic004G336300 Sobic004G336300 Sobic001G533100--Sobic004G336300 Sobic003G130900 Sobic003G130900 Sobic001G533100--Sobic003G130900 Sobic001G533100--Sobic002G426100 Sobic005G129201 Sobic005G129201 Sobic001G533100--Sobic005G129201 Sobic007G173000 Sobic007G173000 Sobic001G533100--Sobic007G173000 Sobic003G005900 Sobic003G005900 Sobic001G533100--Sobic003G005900 Sobic007G125300 Sobic007G125300 Sobic001G140700--Sobic007G125300 Sobic004G069400 Sobic004G069400 Sobic001G140700--Sobic004G069400 Sobic006G094100 Sobic006G094100 Sobic001G140700--Sobic006G094100 Sobic002G236700 Sobic002G236700 Sobic001G140700--Sobic002G236700 Sobic003G212600 Sobic003G212600 Sobic001G140700--Sobic003G212600 Sobic001G140700--Sobic001G268300 Sobic006G120600 Sobic006G120600 Sobic001G140700--Sobic006G120600 Sobic009G087300 Sobic009G087300 Sobic001G140700--Sobic009G087300 Sobic010G250400 Sobic010G250400 Sobic001G140700--Sobic010G250400 Sobic010G103500 Sobic010G103500 Sobic004G001600--Sobic010G103500 Sobic004G306100 Sobic004G306100 Sobic004G001600--Sobic004G306100 Sobic004G001600--Sobic009G120400 Sobic004G001600--Sobic002G426100 Sobic003G315700 Sobic003G315700 Sobic004G001600--Sobic003G315700 Sobic006G126800 Sobic006G126800 Sobic004G001600--Sobic006G126800 Sobic010G052400 Sobic010G052400 Sobic004G001600--Sobic010G052400 Sobic002G192900 Sobic002G192900 Sobic004G001600--Sobic002G192900 Sobic003G409600 Sobic003G409600 Sobic004G001600--Sobic003G409600
Octagon: transcription factors


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