Gene annotation
Transcriptome id Sobic.004G354301.1
Synonym -
Functional annotation -
UniProt A0A1Z5RQJ9
Pfam PF01422
Panther DB PTHR12360 PTHR12360:SF0
NCBI CDD -
KEGG Orthology K12236; transcriptional repressor NF-X1
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G10170 : NF-X-like 1
RAP-DB (Rice) LOC_Os06g14190.1 : NF-X1-type zinc finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a049369 , Zm00025a042735
Brachypodium PNT76112
Barley HORVU6Hr1G078350.1 , HORVU7Hr1G115270.7 , HORVU7Hr1G115270.6 , HORVU7Hr1G115270.5 , HORVU7Hr1G115270.4 , HORVU7Hr1G115270.3 , HORVU7Hr1G115270.2 , HORVU7Hr1G115270.1 , HORVU7Hr1G115270.8 , HORVU7Hr1G115270.13 , HORVU7Hr1G115270.12 , HORVU7Hr1G115270.11 , HORVU7Hr1G115270.10
Wheat TraesCS7B02G432300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G193500 CK1_CaseinKinase_1.2 - CK1 includes the casein kinase 1 kinases, expressed K02218: CSNK1, casein kinase 1
2 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
3 Sobic.001G049400 OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
4 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
5 Sobic.001G378200 tetratricopeptide repeat domain containing protein, expressed -
6 Sobic.001G358500 GA20734-PA, putative, expressed -
7 Sobic.007G056500 cullin, putative, expressed K03869: cullin 3
8 Sobic.010G243400 expressed protein -
9 Sobic.004G028100 expressed protein -
10 Sobic.001G465400 dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed K00658: DLST, 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase)
11 Sobic.002G396700 NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative, expressed K03942: NADH dehydrogenase (ubiquinone) flavoprotein 1
12 Sobic.003G200600 CBS domain containing membrane protein, putative, expressed -
13 Sobic.004G344700 expressed protein -
14 Sobic.009G089700 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
15 Sobic.004G084500 GPI-anchor transamidase precursor, putative, expressed K05290: GPI-anchor transamidase subunit K
16 Sobic.001G193100 expressed protein -
17 Sobic.004G078700 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
18 Sobic.001G023100 ACBP4, putative, expressed -
19 Sobic.001G421400 expressed protein -
20 Sobic.008G018500 expressed protein -


Gene co-expression network
sample Sobic004G354301 Sobic004G354301 Sobic003G193500 Sobic003G193500 Sobic004G354301--Sobic003G193500 Sobic001G467100 Sobic001G467100 Sobic004G354301--Sobic001G467100 Sobic001G049400 Sobic001G049400 Sobic004G354301--Sobic001G049400 Sobic003G394200 Sobic003G394200 Sobic004G354301--Sobic003G394200 Sobic001G378200 Sobic001G378200 Sobic004G354301--Sobic001G378200 Sobic001G358500 Sobic001G358500 Sobic004G354301--Sobic001G358500 Sobic007G056500 Sobic007G056500 Sobic004G354301--Sobic007G056500 Sobic010G243400 Sobic010G243400 Sobic004G354301--Sobic010G243400 Sobic004G028100 Sobic004G028100 Sobic004G354301--Sobic004G028100 Sobic003G302200 Sobic003G302200 Sobic003G193500--Sobic003G302200 Sobic003G182300 Sobic003G182300 Sobic003G193500--Sobic003G182300 Sobic009G128500 Sobic009G128500 Sobic003G193500--Sobic009G128500 Sobic007G042900 Sobic007G042900 Sobic003G193500--Sobic007G042900 Sobic006G039400 Sobic006G039400 Sobic003G193500--Sobic006G039400 Sobic001G019800 Sobic001G019800 Sobic003G193500--Sobic001G019800 Sobic010G169900 Sobic010G169900 Sobic003G193500--Sobic010G169900 Sobic002G079000 Sobic002G079000 Sobic003G193500--Sobic002G079000 Sobic009G077600 Sobic009G077600 Sobic003G193500--Sobic009G077600 Sobic004G208500 Sobic004G208500 Sobic001G467100--Sobic004G208500 Sobic010G172400 Sobic010G172400 Sobic001G467100--Sobic010G172400 Sobic001G474400 Sobic001G474400 Sobic001G467100--Sobic001G474400 Sobic001G099900 Sobic001G099900 Sobic001G467100--Sobic001G099900 Sobic003G222700 Sobic003G222700 Sobic001G467100--Sobic003G222700 Sobic007G145400 Sobic007G145400 Sobic001G467100--Sobic007G145400 Sobic005G114500 Sobic005G114500 Sobic001G467100--Sobic005G114500 Sobic001G161700 Sobic001G161700 Sobic001G467100--Sobic001G161700 Sobic005G110499 Sobic005G110499 Sobic001G467100--Sobic005G110499 Sobic010G020400 Sobic010G020400 Sobic001G049400--Sobic010G020400 Sobic001G465400 Sobic001G465400 Sobic001G049400--Sobic001G465400 Sobic008G085700 Sobic008G085700 Sobic001G049400--Sobic008G085700 Sobic004G078700 Sobic004G078700 Sobic001G049400--Sobic004G078700 Sobic001G211900 Sobic001G211900 Sobic001G049400--Sobic001G211900 Sobic001G049400--Sobic003G302200 Sobic008G055900 Sobic008G055900 Sobic001G049400--Sobic008G055900 Sobic003G338500 Sobic003G338500 Sobic001G049400--Sobic003G338500 Sobic007G173700 Sobic007G173700 Sobic001G049400--Sobic007G173700 Sobic004G084500 Sobic004G084500 Sobic003G394200--Sobic004G084500 Sobic006G203300 Sobic006G203300 Sobic003G394200--Sobic006G203300 Sobic006G128100 Sobic006G128100 Sobic003G394200--Sobic006G128100 Sobic010G223400 Sobic010G223400 Sobic003G394200--Sobic010G223400 Sobic001G308400 Sobic001G308400 Sobic003G394200--Sobic001G308400 Sobic009G049400 Sobic009G049400 Sobic003G394200--Sobic009G049400 Sobic003G270600 Sobic003G270600 Sobic003G394200--Sobic003G270600 Sobic003G189600 Sobic003G189600 Sobic003G394200--Sobic003G189600 Sobic001G369000 Sobic001G369000 Sobic003G394200--Sobic001G369000 Sobic001G378200--Sobic001G465400 Sobic001G112400 Sobic001G112400 Sobic001G378200--Sobic001G112400 Sobic006G012700 Sobic006G012700 Sobic001G378200--Sobic006G012700 Sobic001G378200--Sobic004G078700 Sobic004G039400 Sobic004G039400 Sobic001G378200--Sobic004G039400 Sobic001G443200 Sobic001G443200 Sobic001G378200--Sobic001G443200 Sobic001G008100 Sobic001G008100 Sobic001G378200--Sobic001G008100 Sobic002G262200 Sobic002G262200 Sobic001G378200--Sobic002G262200 Sobic005G207400 Sobic005G207400 Sobic001G378200--Sobic005G207400 Sobic001G428800 Sobic001G428800 Sobic001G358500--Sobic001G428800 Sobic010G192600 Sobic010G192600 Sobic001G358500--Sobic010G192600 Sobic008G018500 Sobic008G018500 Sobic001G358500--Sobic008G018500 Sobic001G358500--Sobic008G085700 Sobic001G358500--Sobic001G467100 Sobic001G358500--Sobic003G182300 Sobic001G358500--Sobic006G039400 Sobic001G358500--Sobic001G049400 Sobic001G358500--Sobic001G211900 Sobic006G186400 Sobic006G186400 Sobic007G056500--Sobic006G186400 Sobic002G034600 Sobic002G034600 Sobic007G056500--Sobic002G034600 Sobic001G042200 Sobic001G042200 Sobic007G056500--Sobic001G042200 Sobic010G077500 Sobic010G077500 Sobic007G056500--Sobic010G077500 Sobic010G095700 Sobic010G095700 Sobic007G056500--Sobic010G095700 Sobic004G180900 Sobic004G180900 Sobic007G056500--Sobic004G180900 Sobic001G395100 Sobic001G395100 Sobic007G056500--Sobic001G395100 Sobic001G066300 Sobic001G066300 Sobic007G056500--Sobic001G066300 Sobic006G121300 Sobic006G121300 Sobic007G056500--Sobic006G121300 Sobic008G165000 Sobic008G165000 Sobic010G243400--Sobic008G165000 Sobic007G056100 Sobic007G056100 Sobic010G243400--Sobic007G056100 Sobic010G261600 Sobic010G261600 Sobic010G243400--Sobic010G261600 Sobic003G243700 Sobic003G243700 Sobic010G243400--Sobic003G243700 Sobic009G041700 Sobic009G041700 Sobic010G243400--Sobic009G041700 Sobic009G224000 Sobic009G224000 Sobic010G243400--Sobic009G224000 Sobic004G003401 Sobic004G003401 Sobic010G243400--Sobic004G003401 Sobic008G173400 Sobic008G173400 Sobic010G243400--Sobic008G173400 Sobic001G421400 Sobic001G421400 Sobic010G243400--Sobic001G421400 Sobic002G303600 Sobic002G303600 Sobic004G028100--Sobic002G303600 Sobic009G092400 Sobic009G092400 Sobic004G028100--Sobic009G092400 Sobic006G180000 Sobic006G180000 Sobic004G028100--Sobic006G180000 Sobic009G249700 Sobic009G249700 Sobic004G028100--Sobic009G249700 Sobic007G218000 Sobic007G218000 Sobic004G028100--Sobic007G218000 Sobic003G173600 Sobic003G173600 Sobic004G028100--Sobic003G173600 Sobic004G028100--Sobic010G243400 Sobic001G449900 Sobic001G449900 Sobic004G028100--Sobic001G449900 Sobic003G264100 Sobic003G264100 Sobic004G028100--Sobic003G264100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.