Gene annotation
Transcriptome id Sobic.004G232400.1
Synonym Sb04g027600
Functional annotation VQ domain containing protein, putative, expressed
UniProt C5XYN5
Pfam PF05678
Panther DB PTHR33179 PTHR33179:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G65170 : VQ motif-containing protein
RAP-DB (Rice) LOC_Os02g51740.1 : VQ domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a022141 , Zm00025a033164
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G252500 "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSAUR28 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
2 Sobic.002G361200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@sex determination protein tasselseed-2, putative, expressed -
3 Sobic.005G018700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
4 Sobic.002G245100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
5 Sobic.003G192100 expressed protein -
6 Sobic.001G353300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed K01087: trehalose 6-phosphate phosphatase
7 Sobic.010G268400 eukaryotic aspartyl protease domain containing protein, expressed -
8 Sobic.001G389700 VQ domain containing protein, putative, expressed -
9 Sobic.002G329000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-ld.3 - DUF26 kinases have homology to DUF26 containing loci, expressed -
10 Sobic.003G037800 transferase family protein, putative, expressed -
11 Sobic.007G198100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@membrane protein, putative, expressed -
12 Sobic.001G532200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsRhmbd7 - Putative Rhomboid homologue, expressed -
13 Sobic.006G148000 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
14 Sobic.003G343900 expressed protein -
15 Sobic.010G195500 reductase, putative, expressed -
16 Sobic.005G093000 - -
17 Sobic.004G101300 expressed protein -
18 Sobic.010G107100 expressed protein -
19 Sobic.009G200700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@VQ domain containing protein, putative, expressed -
20 Sobic.003G349600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS1-14 - C2H2 zinc finger protein, expressed -


Gene co-expression network
sample Sobic004G232400 Sobic004G232400 Sobic010G252500 Sobic010G252500 Sobic004G232400--Sobic010G252500 Sobic002G361200 Sobic002G361200 Sobic004G232400--Sobic002G361200 Sobic005G018700 Sobic005G018700 Sobic004G232400--Sobic005G018700 Sobic002G245100 Sobic002G245100 Sobic004G232400--Sobic002G245100 Sobic003G192100 Sobic003G192100 Sobic004G232400--Sobic003G192100 Sobic001G353300 Sobic001G353300 Sobic004G232400--Sobic001G353300 Sobic010G268400 Sobic010G268400 Sobic004G232400--Sobic010G268400 Sobic001G389700 Sobic001G389700 Sobic004G232400--Sobic001G389700 Sobic002G329000 Sobic002G329000 Sobic004G232400--Sobic002G329000 Sobic007G218800 Sobic007G218800 Sobic010G252500--Sobic007G218800 Sobic007G030501 Sobic007G030501 Sobic010G252500--Sobic007G030501 Sobic004G062500 Sobic004G062500 Sobic010G252500--Sobic004G062500 Sobic002G003800 Sobic002G003800 Sobic010G252500--Sobic002G003800 Sobic006G197100 Sobic006G197100 Sobic010G252500--Sobic006G197100 Sobic003G404600 Sobic003G404600 Sobic010G252500--Sobic003G404600 Sobic003G343900 Sobic003G343900 Sobic010G252500--Sobic003G343900 Sobic003G311800 Sobic003G311800 Sobic010G252500--Sobic003G311800 Sobic004G139300 Sobic004G139300 Sobic010G252500--Sobic004G139300 Sobic006G274933 Sobic006G274933 Sobic002G361200--Sobic006G274933 Sobic002G361200--Sobic003G311800 Sobic010G001000 Sobic010G001000 Sobic002G361200--Sobic010G001000 Sobic007G090469 Sobic007G090469 Sobic002G361200--Sobic007G090469 Sobic006G157900 Sobic006G157900 Sobic002G361200--Sobic006G157900 Sobic002G183700 Sobic002G183700 Sobic002G361200--Sobic002G183700 Sobic001G300500 Sobic001G300500 Sobic002G361200--Sobic001G300500 Sobic003G417100 Sobic003G417100 Sobic002G361200--Sobic003G417100 Sobic002G361200--Sobic010G252500 Sobic005G018700--Sobic002G245100 Sobic002G017800 Sobic002G017800 Sobic005G018700--Sobic002G017800 Sobic006G103000 Sobic006G103000 Sobic005G018700--Sobic006G103000 Sobic010G185000 Sobic010G185000 Sobic005G018700--Sobic010G185000 Sobic003G429000 Sobic003G429000 Sobic005G018700--Sobic003G429000 Sobic003G037800 Sobic003G037800 Sobic005G018700--Sobic003G037800 Sobic004G340900 Sobic004G340900 Sobic005G018700--Sobic004G340900 Sobic001G050100 Sobic001G050100 Sobic005G018700--Sobic001G050100 Sobic005G018700--Sobic003G192100 Sobic002G245100--Sobic005G018700 Sobic002G245100--Sobic003G037800 Sobic004G237800 Sobic004G237800 Sobic002G245100--Sobic004G237800 Sobic002G202600 Sobic002G202600 Sobic002G245100--Sobic002G202600 Sobic005G196800 Sobic005G196800 Sobic002G245100--Sobic005G196800 Sobic002G245100--Sobic004G340900 Sobic004G321300 Sobic004G321300 Sobic002G245100--Sobic004G321300 Sobic003G158500 Sobic003G158500 Sobic002G245100--Sobic003G158500 Sobic001G107400 Sobic001G107400 Sobic002G245100--Sobic001G107400 Sobic003G192100--Sobic005G018700 Sobic004G101300 Sobic004G101300 Sobic003G192100--Sobic004G101300 Sobic003G037500 Sobic003G037500 Sobic003G192100--Sobic003G037500 Sobic007G155000 Sobic007G155000 Sobic003G192100--Sobic007G155000 Sobic003G192100--Sobic002G245100 Sobic001G231700 Sobic001G231700 Sobic003G192100--Sobic001G231700 Sobic003G192100--Sobic001G050100 Sobic001G367600 Sobic001G367600 Sobic003G192100--Sobic001G367600 Sobic003G192100--Sobic004G340900 Sobic004G212300 Sobic004G212300 Sobic001G353300--Sobic004G212300 Sobic002G257300 Sobic002G257300 Sobic001G353300--Sobic002G257300 Sobic001G353300--Sobic010G252500 Sobic001G353300--Sobic004G232400 Sobic002G361700 Sobic002G361700 Sobic001G353300--Sobic002G361700 Sobic001G353300--Sobic004G062500 Sobic001G353300--Sobic001G389700 Sobic004G024100 Sobic004G024100 Sobic001G353300--Sobic004G024100 Sobic003G184100 Sobic003G184100 Sobic001G353300--Sobic003G184100 Sobic010G268400--Sobic002G329000 Sobic001G516600 Sobic001G516600 Sobic010G268400--Sobic001G516600 Sobic010G268400--Sobic003G192100 Sobic005G093000 Sobic005G093000 Sobic010G268400--Sobic005G093000 Sobic010G268400--Sobic001G107400 Sobic010G268400--Sobic003G037800 Sobic010G268400--Sobic002G245100 Sobic010G268400--Sobic003G429000 Sobic010G195500 Sobic010G195500 Sobic010G268400--Sobic010G195500 Sobic001G532200 Sobic001G532200 Sobic001G389700--Sobic001G532200 Sobic003G119500 Sobic003G119500 Sobic001G389700--Sobic003G119500 Sobic001G389700--Sobic004G212300 Sobic001G389700--Sobic002G329000 Sobic002G250000 Sobic002G250000 Sobic001G389700--Sobic002G250000 Sobic001G389700--Sobic010G252500 Sobic001G389700--Sobic005G093000 Sobic001G084100 Sobic001G084100 Sobic001G389700--Sobic001G084100 Sobic002G393400 Sobic002G393400 Sobic001G389700--Sobic002G393400 Sobic002G329000--Sobic005G093000 Sobic002G329000--Sobic003G429000 Sobic002G329000--Sobic010G268400 Sobic001G389000 Sobic001G389000 Sobic002G329000--Sobic001G389000 Sobic002G329000--Sobic007G155000 Sobic003G417350 Sobic003G417350 Sobic002G329000--Sobic003G417350 Sobic002G329000--Sobic003G037800 Sobic002G329000--Sobic001G050100 Sobic002G329000--Sobic010G195500
Octagon: transcription factors


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