Gene annotation
Transcriptome id Sobic.010G158500.1
Synonym Sb10g021080
Functional annotation Zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A194YKK4
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF156
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G40070 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g34620.1 : Zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a042353
Brachypodium KQK06948
Barley HORVU7Hr1G080080.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G237900 expansin precursor, putative, expressed -
2 Sobic.006G158400 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
3 Sobic.007G204700 expressed protein -
4 Sobic.002G124500 expansin precursor, putative, expressed -
5 Sobic.K026900 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.010G063000 - -
7 Sobic.004G202400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@high affinity nitrate transporter, putative, expressed -
8 Sobic.008G127933 - -
9 Sobic.005G066100 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
10 Sobic.005G067500 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
11 Sobic.008G027600 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.003G363900 glycosyl hydrolase, putative, expressed K01183: chitinase
13 Sobic.001G508532 - -
14 Sobic.010G043900 expressed protein -
15 Sobic.004G318700 OsSub22 - Putative Subtilisin homologue, expressed -
16 Sobic.010G271300 carrier, putative, expressed -
17 Sobic.006G202600 Up-reguralion under heat(PubMedID : 24916767)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
18 Sobic.001G330300 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
19 Sobic.001G393000 expressed protein -
20 Sobic.002G425000 VQ domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic010G158500 Sobic010G158500 Sobic001G237900 Sobic001G237900 Sobic010G158500--Sobic001G237900 Sobic006G158400 Sobic006G158400 Sobic010G158500--Sobic006G158400 Sobic007G204700 Sobic007G204700 Sobic010G158500--Sobic007G204700 Sobic002G124500 Sobic002G124500 Sobic010G158500--Sobic002G124500 SobicK026900 SobicK026900 Sobic010G158500--SobicK026900 Sobic010G063000 Sobic010G063000 Sobic010G158500--Sobic010G063000 Sobic004G202400 Sobic004G202400 Sobic010G158500--Sobic004G202400 Sobic008G127933 Sobic008G127933 Sobic010G158500--Sobic008G127933 Sobic005G066100 Sobic005G066100 Sobic010G158500--Sobic005G066100 Sobic001G238400 Sobic001G238400 Sobic001G237900--Sobic001G238400 Sobic001G237900--Sobic010G158500 Sobic003G053300 Sobic003G053300 Sobic001G237900--Sobic003G053300 Sobic001G237900--Sobic006G158400 Sobic002G425000 Sobic002G425000 Sobic001G237900--Sobic002G425000 Sobic001G237900--Sobic004G202400 Sobic001G304100 Sobic001G304100 Sobic001G237900--Sobic001G304100 Sobic001G237900--Sobic010G063000 Sobic002G213600 Sobic002G213600 Sobic001G237900--Sobic002G213600 Sobic006G158400--Sobic008G127933 Sobic008G027600 Sobic008G027600 Sobic006G158400--Sobic008G027600 Sobic006G158400--Sobic001G237900 Sobic006G158400--Sobic010G158500 Sobic006G158400--Sobic007G204700 Sobic003G007600 Sobic003G007600 Sobic006G158400--Sobic003G007600 Sobic010G043900 Sobic010G043900 Sobic006G158400--Sobic010G043900 Sobic001G318500 Sobic001G318500 Sobic006G158400--Sobic001G318500 Sobic003G299300 Sobic003G299300 Sobic006G158400--Sobic003G299300 Sobic007G204700--Sobic006G158400 Sobic001G462700 Sobic001G462700 Sobic007G204700--Sobic001G462700 Sobic007G204700--Sobic010G158500 Sobic007G204700--Sobic008G127933 Sobic007G204700--Sobic001G237900 Sobic005G215400 Sobic005G215400 Sobic007G204700--Sobic005G215400 Sobic007G204700--Sobic004G202400 Sobic008G128200 Sobic008G128200 Sobic007G204700--Sobic008G128200 Sobic004G348800 Sobic004G348800 Sobic007G204700--Sobic004G348800 Sobic003G053400 Sobic003G053400 Sobic002G124500--Sobic003G053400 Sobic002G124500--SobicK026900 Sobic001G508532 Sobic001G508532 Sobic002G124500--Sobic001G508532 Sobic002G124500--Sobic002G425000 Sobic002G124500--Sobic004G348800 Sobic002G124500--Sobic010G158500 Sobic002G124500--Sobic003G053300 Sobic010G212500 Sobic010G212500 Sobic002G124500--Sobic010G212500 Sobic006G202600 Sobic006G202600 Sobic002G124500--Sobic006G202600 Sobic004G297900 Sobic004G297900 SobicK026900--Sobic004G297900 Sobic007G090469 Sobic007G090469 SobicK026900--Sobic007G090469 Sobic001G238300 Sobic001G238300 SobicK026900--Sobic001G238300 SobicK026900--Sobic006G202600 SobicK026900--Sobic004G202400 SobicK026900--Sobic002G425000 Sobic010G270700 Sobic010G270700 SobicK026900--Sobic010G270700 SobicK026900--Sobic001G237900 Sobic004G295100 Sobic004G295100 SobicK026900--Sobic004G295100 Sobic006G125100 Sobic006G125100 Sobic010G063000--Sobic006G125100 Sobic002G125700 Sobic002G125700 Sobic010G063000--Sobic002G125700 Sobic010G063000--Sobic002G213600 Sobic010G063000--Sobic001G237900 Sobic001G503100 Sobic001G503100 Sobic010G063000--Sobic001G503100 Sobic010G001000 Sobic010G001000 Sobic010G063000--Sobic010G001000 Sobic001G161500 Sobic001G161500 Sobic010G063000--Sobic001G161500 Sobic010G063000--Sobic001G318500 Sobic001G325400 Sobic001G325400 Sobic010G063000--Sobic001G325400 Sobic006G197100 Sobic006G197100 Sobic004G202400--Sobic006G197100 Sobic001G416200 Sobic001G416200 Sobic004G202400--Sobic001G416200 Sobic004G202400--Sobic001G237900 Sobic004G202400--SobicK026900 Sobic003G157600 Sobic003G157600 Sobic004G202400--Sobic003G157600 Sobic004G349125 Sobic004G349125 Sobic004G202400--Sobic004G349125 Sobic004G042000 Sobic004G042000 Sobic004G202400--Sobic004G042000 Sobic002G042200 Sobic002G042200 Sobic004G202400--Sobic002G042200 Sobic003G311800 Sobic003G311800 Sobic004G202400--Sobic003G311800 Sobic008G127933--Sobic006G158400 Sobic008G127933--Sobic002G425000 Sobic008G127933--Sobic001G237900 Sobic008G127933--Sobic007G204700 Sobic008G128066 Sobic008G128066 Sobic008G127933--Sobic008G128066 Sobic008G127933--Sobic010G270700 Sobic008G009400 Sobic008G009400 Sobic008G127933--Sobic008G009400 Sobic008G127933--Sobic001G238400 Sobic008G127933--SobicK026900 Sobic005G066432 Sobic005G066432 Sobic005G066100--Sobic005G066432 Sobic005G066100--Sobic004G202400 Sobic005G065900 Sobic005G065900 Sobic005G066100--Sobic005G065900 Sobic005G066100--SobicK026900 Sobic005G066100--Sobic007G204700 Sobic005G066100--Sobic002G425000 Sobic010G148800 Sobic010G148800 Sobic005G066100--Sobic010G148800 Sobic005G066100--Sobic008G127933 Sobic005G066100--Sobic010G158500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.