Gene annotation
Transcriptome id Sobic.008G027600.1
Synonym Sb08g002420
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5YR90
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF88
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G40070 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os12g24490.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a053801
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G158400 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
2 Sobic.002G369400 Sulfotransferase family protein (At)(PubMedID : 27208977)@sulfotransferase domain containing protein, expressed -
3 Sobic.008G158100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
4 Sobic.010G043900 expressed protein -
5 Sobic.001G318500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
6 Sobic.001G114900 - -
7 Sobic.003G007600 expressed protein -
8 Sobic.009G145500 peroxidase precursor, putative, expressed K00430: peroxidase
9 Sobic.002G243000 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
10 Sobic.002G004900 transporter family protein, putative, expressed -
11 Sobic.002G338500 sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
12 Sobic.010G062300 plant protein of unknown function domain containing protein, expressed -
13 Sobic.006G154500 GEM, putative, expressed -
14 Sobic.004G161751 - -
15 Sobic.004G148200 Cupin domain containing protein, expressed -
16 Sobic.003G417700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
17 Sobic.003G026400 aquaporin protein, putative, expressed K09874: aquaporin NIP
18 Sobic.006G268800 transporter family protein, putative, expressed -
19 Sobic.003G299300 expressed protein -
20 Sobic.006G008000 O-methyltransferase, putative, expressed -


Gene co-expression network
sample Sobic008G027600 Sobic008G027600 Sobic006G158400 Sobic006G158400 Sobic008G027600--Sobic006G158400 Sobic002G369400 Sobic002G369400 Sobic008G027600--Sobic002G369400 Sobic008G158100 Sobic008G158100 Sobic008G027600--Sobic008G158100 Sobic010G043900 Sobic010G043900 Sobic008G027600--Sobic010G043900 Sobic001G318500 Sobic001G318500 Sobic008G027600--Sobic001G318500 Sobic001G114900 Sobic001G114900 Sobic008G027600--Sobic001G114900 Sobic003G007600 Sobic003G007600 Sobic008G027600--Sobic003G007600 Sobic009G145500 Sobic009G145500 Sobic008G027600--Sobic009G145500 Sobic002G243000 Sobic002G243000 Sobic008G027600--Sobic002G243000 Sobic008G127933 Sobic008G127933 Sobic006G158400--Sobic008G127933 Sobic006G158400--Sobic008G027600 Sobic001G237900 Sobic001G237900 Sobic006G158400--Sobic001G237900 Sobic010G158500 Sobic010G158500 Sobic006G158400--Sobic010G158500 Sobic007G204700 Sobic007G204700 Sobic006G158400--Sobic007G204700 Sobic006G158400--Sobic003G007600 Sobic006G158400--Sobic010G043900 Sobic006G158400--Sobic001G318500 Sobic003G299300 Sobic003G299300 Sobic006G158400--Sobic003G299300 Sobic002G369400--Sobic008G027600 Sobic001G242000 Sobic001G242000 Sobic002G369400--Sobic001G242000 Sobic002G369400--Sobic001G114900 Sobic010G062300 Sobic010G062300 Sobic002G369400--Sobic010G062300 Sobic002G012300 Sobic002G012300 Sobic002G369400--Sobic002G012300 Sobic003G079200 Sobic003G079200 Sobic002G369400--Sobic003G079200 Sobic008G022000 Sobic008G022000 Sobic002G369400--Sobic008G022000 Sobic002G063800 Sobic002G063800 Sobic002G369400--Sobic002G063800 Sobic008G158501 Sobic008G158501 Sobic002G369400--Sobic008G158501 Sobic008G158100--Sobic008G027600 Sobic004G148200 Sobic004G148200 Sobic008G158100--Sobic004G148200 Sobic002G139300 Sobic002G139300 Sobic008G158100--Sobic002G139300 Sobic003G417700 Sobic003G417700 Sobic008G158100--Sobic003G417700 Sobic001G187200 Sobic001G187200 Sobic008G158100--Sobic001G187200 Sobic005G011200 Sobic005G011200 Sobic008G158100--Sobic005G011200 Sobic006G268800 Sobic006G268800 Sobic008G158100--Sobic006G268800 Sobic008G158100--Sobic002G369400 Sobic008G158100--Sobic009G145500 Sobic002G338500 Sobic002G338500 Sobic010G043900--Sobic002G338500 Sobic010G043900--Sobic008G027600 Sobic002G422300 Sobic002G422300 Sobic010G043900--Sobic002G422300 Sobic005G213600 Sobic005G213600 Sobic010G043900--Sobic005G213600 Sobic010G043900--Sobic006G158400 Sobic001G238400 Sobic001G238400 Sobic010G043900--Sobic001G238400 Sobic003G026400 Sobic003G026400 Sobic010G043900--Sobic003G026400 Sobic003G043600 Sobic003G043600 Sobic010G043900--Sobic003G043600 Sobic005G213500 Sobic005G213500 Sobic010G043900--Sobic005G213500 Sobic002G004900 Sobic002G004900 Sobic001G318500--Sobic002G004900 Sobic002G017800 Sobic002G017800 Sobic001G318500--Sobic002G017800 Sobic009G111000 Sobic009G111000 Sobic001G318500--Sobic009G111000 Sobic002G302500 Sobic002G302500 Sobic001G318500--Sobic002G302500 Sobic002G055700 Sobic002G055700 Sobic001G318500--Sobic002G055700 Sobic004G203700 Sobic004G203700 Sobic001G318500--Sobic004G203700 Sobic001G318500--Sobic004G148200 Sobic001G367600 Sobic001G367600 Sobic001G318500--Sobic001G367600 Sobic001G318500--Sobic008G027600 Sobic001G114900--Sobic003G026400 Sobic001G114900--Sobic008G027600 Sobic002G010900 Sobic002G010900 Sobic001G114900--Sobic002G010900 Sobic001G114900--Sobic002G369400 Sobic001G114900--Sobic008G022000 Sobic006G008000 Sobic006G008000 Sobic001G114900--Sobic006G008000 Sobic001G114900--Sobic002G422300 Sobic008G158332 Sobic008G158332 Sobic001G114900--Sobic008G158332 Sobic008G066200 Sobic008G066200 Sobic001G114900--Sobic008G066200 Sobic003G007600--Sobic003G299300 Sobic003G007600--Sobic001G238400 Sobic010G270500 Sobic010G270500 Sobic003G007600--Sobic010G270500 Sobic006G103000 Sobic006G103000 Sobic003G007600--Sobic006G103000 Sobic001G304100 Sobic001G304100 Sobic003G007600--Sobic001G304100 Sobic003G007600--Sobic002G017800 Sobic003G007600--Sobic009G111000 Sobic003G007600--Sobic001G318500 Sobic001G402200 Sobic001G402200 Sobic003G007600--Sobic001G402200 Sobic009G145500--Sobic003G043600 Sobic003G073380 Sobic003G073380 Sobic009G145500--Sobic003G073380 Sobic009G145500--Sobic004G148200 Sobic001G231400 Sobic001G231400 Sobic009G145500--Sobic001G231400 Sobic003G268600 Sobic003G268600 Sobic009G145500--Sobic003G268600 Sobic009G145500--Sobic002G338500 Sobic006G235000 Sobic006G235000 Sobic009G145500--Sobic006G235000 Sobic009G145600 Sobic009G145600 Sobic009G145500--Sobic009G145600 Sobic009G145500--Sobic006G268800 Sobic006G240600 Sobic006G240600 Sobic002G243000--Sobic006G240600 Sobic003G050300 Sobic003G050300 Sobic002G243000--Sobic003G050300 Sobic002G243000--Sobic009G145500 Sobic002G243000--Sobic008G027600 Sobic004G161751 Sobic004G161751 Sobic002G243000--Sobic004G161751 Sobic002G243000--Sobic003G073380 Sobic001G449100 Sobic001G449100 Sobic002G243000--Sobic001G449100 Sobic002G243000--Sobic002G369400 Sobic001G401100 Sobic001G401100 Sobic002G243000--Sobic001G401100
Octagon: transcription factors


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