Gene annotation
Transcriptome id Sobic.005G066100.1
Synonym Sb05g005580
Functional annotation glycine-rich cell wall structural protein 2 precursor, putative, expressed
UniProt -
Pfam -
Panther DB PTHR33548 PTHR33548:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os10g31640.1 : glycine-rich cell wall structural protein 2 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a012780 , Zm00025a012777 , Zm00025a012766 , Zm00025a012779 , Zm00025a012769 , Zm00025a043908
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G066432 - -
2 Sobic.004G202400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@high affinity nitrate transporter, putative, expressed -
3 Sobic.005G065900 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
4 Sobic.K026900 peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.007G204700 expressed protein -
6 Sobic.002G425000 VQ domain containing protein, putative, expressed -
7 Sobic.010G148800 WRKY31, expressed -
8 Sobic.008G127933 - -
9 Sobic.010G158500 Zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.002G042200 gibberellin receptor GID1L2, putative, expressed -
11 Sobic.008G128066 - -
12 Sobic.010G270700 GDSL-like lipase/acylhydrolase, putative, expressed -
13 Sobic.010G003600 LTPL127 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
14 Sobic.001G237900 expansin precursor, putative, expressed -
15 Sobic.001G238300 expansin precursor, putative, expressed -
16 Sobic.003G157600 expressed protein -
17 Sobic.006G260200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@uncharacterized protein At4g06744 precursor, putative, expressed -
18 Sobic.004G322800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.006G158400 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
20 Sobic.005G160700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -


Gene co-expression network
sample Sobic005G066100 Sobic005G066100 Sobic005G066432 Sobic005G066432 Sobic005G066100--Sobic005G066432 Sobic004G202400 Sobic004G202400 Sobic005G066100--Sobic004G202400 Sobic005G065900 Sobic005G065900 Sobic005G066100--Sobic005G065900 SobicK026900 SobicK026900 Sobic005G066100--SobicK026900 Sobic007G204700 Sobic007G204700 Sobic005G066100--Sobic007G204700 Sobic002G425000 Sobic002G425000 Sobic005G066100--Sobic002G425000 Sobic010G148800 Sobic010G148800 Sobic005G066100--Sobic010G148800 Sobic008G127933 Sobic008G127933 Sobic005G066100--Sobic008G127933 Sobic010G158500 Sobic010G158500 Sobic005G066100--Sobic010G158500 Sobic005G066432--Sobic005G065900 Sobic005G066432--Sobic010G148800 Sobic005G066432--Sobic005G066100 Sobic006G079300 Sobic006G079300 Sobic005G066432--Sobic006G079300 Sobic006G277700 Sobic006G277700 Sobic005G066432--Sobic006G277700 Sobic003G020200 Sobic003G020200 Sobic005G066432--Sobic003G020200 Sobic004G009400 Sobic004G009400 Sobic005G066432--Sobic004G009400 Sobic005G160700 Sobic005G160700 Sobic005G066432--Sobic005G160700 Sobic004G322800 Sobic004G322800 Sobic005G066432--Sobic004G322800 Sobic006G197100 Sobic006G197100 Sobic004G202400--Sobic006G197100 Sobic001G416200 Sobic001G416200 Sobic004G202400--Sobic001G416200 Sobic001G237900 Sobic001G237900 Sobic004G202400--Sobic001G237900 Sobic004G202400--SobicK026900 Sobic003G157600 Sobic003G157600 Sobic004G202400--Sobic003G157600 Sobic004G349125 Sobic004G349125 Sobic004G202400--Sobic004G349125 Sobic004G042000 Sobic004G042000 Sobic004G202400--Sobic004G042000 Sobic002G042200 Sobic002G042200 Sobic004G202400--Sobic002G042200 Sobic003G311800 Sobic003G311800 Sobic004G202400--Sobic003G311800 Sobic005G065900--Sobic010G148800 Sobic005G065900--Sobic005G066432 Sobic006G256900 Sobic006G256900 Sobic005G065900--Sobic006G256900 Sobic005G065900--Sobic002G042200 Sobic009G199001 Sobic009G199001 Sobic005G065900--Sobic009G199001 Sobic002G404100 Sobic002G404100 Sobic005G065900--Sobic002G404100 Sobic005G065900--Sobic004G322800 Sobic005G065900--Sobic005G066100 Sobic007G050200 Sobic007G050200 Sobic005G065900--Sobic007G050200 Sobic004G297900 Sobic004G297900 SobicK026900--Sobic004G297900 Sobic007G090469 Sobic007G090469 SobicK026900--Sobic007G090469 Sobic001G238300 Sobic001G238300 SobicK026900--Sobic001G238300 Sobic006G202600 Sobic006G202600 SobicK026900--Sobic006G202600 SobicK026900--Sobic004G202400 SobicK026900--Sobic002G425000 Sobic010G270700 Sobic010G270700 SobicK026900--Sobic010G270700 SobicK026900--Sobic001G237900 Sobic004G295100 Sobic004G295100 SobicK026900--Sobic004G295100 Sobic006G158400 Sobic006G158400 Sobic007G204700--Sobic006G158400 Sobic001G462700 Sobic001G462700 Sobic007G204700--Sobic001G462700 Sobic007G204700--Sobic010G158500 Sobic007G204700--Sobic008G127933 Sobic007G204700--Sobic001G237900 Sobic005G215400 Sobic005G215400 Sobic007G204700--Sobic005G215400 Sobic007G204700--Sobic004G202400 Sobic008G128200 Sobic008G128200 Sobic007G204700--Sobic008G128200 Sobic004G348800 Sobic004G348800 Sobic007G204700--Sobic004G348800 Sobic002G425000--Sobic001G238300 Sobic002G261500 Sobic002G261500 Sobic002G425000--Sobic002G261500 Sobic002G425000--Sobic008G127933 Sobic002G425000--Sobic001G237900 Sobic006G260200 Sobic006G260200 Sobic002G425000--Sobic006G260200 Sobic002G425000--Sobic004G297900 Sobic002G425000--SobicK026900 Sobic003G053400 Sobic003G053400 Sobic002G425000--Sobic003G053400 Sobic006G122800 Sobic006G122800 Sobic002G425000--Sobic006G122800 Sobic010G148800--Sobic005G065900 Sobic010G148800--Sobic004G322800 Sobic010G148800--Sobic006G256900 Sobic010G148800--Sobic005G066432 Sobic010G148800--Sobic009G199001 Sobic010G148800--Sobic002G404100 Sobic010G148800--Sobic002G042200 Sobic009G219200 Sobic009G219200 Sobic010G148800--Sobic009G219200 Sobic010G148800--Sobic006G079300 Sobic008G127933--Sobic006G158400 Sobic008G127933--Sobic002G425000 Sobic008G127933--Sobic001G237900 Sobic008G127933--Sobic007G204700 Sobic008G128066 Sobic008G128066 Sobic008G127933--Sobic008G128066 Sobic008G127933--Sobic010G270700 Sobic008G009400 Sobic008G009400 Sobic008G127933--Sobic008G009400 Sobic001G238400 Sobic001G238400 Sobic008G127933--Sobic001G238400 Sobic008G127933--SobicK026900 Sobic010G158500--Sobic001G237900 Sobic010G158500--Sobic006G158400 Sobic010G158500--Sobic007G204700 Sobic002G124500 Sobic002G124500 Sobic010G158500--Sobic002G124500 Sobic010G158500--SobicK026900 Sobic010G063000 Sobic010G063000 Sobic010G158500--Sobic010G063000 Sobic010G158500--Sobic004G202400 Sobic010G158500--Sobic008G127933 Sobic010G158500--Sobic005G066100
Octagon: transcription factors


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