Gene annotation
Transcriptome id Sobic.005G217766.2,Sobic.005G217766.1
Synonym -
Functional annotation -
UniProt A0A1Z5RK37 , A0A1Z5RKX4 , C6JST7 , A0A109ND11
Pfam PF14365 PF03080
Panther DB PTHR31589 PTHR31589:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G56530 : Protein of Unknown Function (DUF239)
RAP-DB (Rice) LOC_Os07g38590.1 : carboxyl-terminal peptidase, putative, expressed
MaizeGDB (Corn) Zm00025a029123
Brachypodium -
Barley -
Wheat TraesCS5D02G545900 , TraesCS5B02G542000 , TraesCS5B02G565600
Populus PNS90051 , PNS90050 , PNS90052


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G191600 cytochrome P450, putative, expressed -
2 Sobic.002G391400 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.002G111900 receptor-like kinase, putative, expressed -
4 Sobic.006G205700 glycosyl hydrolases family 16, putative, expressed -
5 Sobic.001G414800 dirigent, putative, expressed -
6 Sobic.007G206800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like protein kinase, putative, expressed -
7 Sobic.003G441800 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
8 Sobic.010G191700 cytochrome P450, putative, expressed -
9 Sobic.004G106100 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.007G086300 glycosyl hydrolases family 16, putative, expressed -
11 Sobic.003G441601 - -
12 Sobic.001G218400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MATH domain containing protein, expressed -
13 Sobic.010G010000 plant protein of unknown function domain containing protein, expressed -
14 Sobic.005G046400 - -
15 Sobic.005G097400 cell death associated protein, putative, expressed -
16 Sobic.009G065700 - -
17 Sobic.006G133300 expressed protein -
18 Sobic.010G241900 Leucine-rich receptor-like protein kinase family protein(PubMedID : 28640841)@serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed -
19 Sobic.002G391300 peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.002G392100 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic005G217766 Sobic005G217766 Sobic010G191600 Sobic010G191600 Sobic005G217766--Sobic010G191600 Sobic002G391400 Sobic002G391400 Sobic005G217766--Sobic002G391400 Sobic002G111900 Sobic002G111900 Sobic005G217766--Sobic002G111900 Sobic006G205700 Sobic006G205700 Sobic005G217766--Sobic006G205700 Sobic001G414800 Sobic001G414800 Sobic005G217766--Sobic001G414800 Sobic007G206800 Sobic007G206800 Sobic005G217766--Sobic007G206800 Sobic003G441800 Sobic003G441800 Sobic005G217766--Sobic003G441800 Sobic010G191700 Sobic010G191700 Sobic005G217766--Sobic010G191700 Sobic004G106100 Sobic004G106100 Sobic005G217766--Sobic004G106100 Sobic010G191600--Sobic005G217766 Sobic005G097400 Sobic005G097400 Sobic010G191600--Sobic005G097400 Sobic010G191600--Sobic002G111900 Sobic010G191600--Sobic002G391400 Sobic010G191600--Sobic006G205700 Sobic001G218400 Sobic001G218400 Sobic010G191600--Sobic001G218400 Sobic010G191600--Sobic010G191700 Sobic010G191600--Sobic003G441800 Sobic010G191600--Sobic007G206800 Sobic002G391400--Sobic007G206800 Sobic010G241900 Sobic010G241900 Sobic002G391400--Sobic010G241900 Sobic002G391400--Sobic006G205700 Sobic002G391400--Sobic010G191700 Sobic007G220400 Sobic007G220400 Sobic002G391400--Sobic007G220400 Sobic002G334000 Sobic002G334000 Sobic002G391400--Sobic002G334000 Sobic002G392100 Sobic002G392100 Sobic002G391400--Sobic002G392100 Sobic002G391400--Sobic002G111900 Sobic002G391400--Sobic010G191600 Sobic002G111900--Sobic010G191700 Sobic002G391300 Sobic002G391300 Sobic002G111900--Sobic002G391300 Sobic003G441601 Sobic003G441601 Sobic002G111900--Sobic003G441601 Sobic002G111900--Sobic007G220400 Sobic002G111900--Sobic010G241900 Sobic010G010000 Sobic010G010000 Sobic002G111900--Sobic010G010000 Sobic006G171100 Sobic006G171100 Sobic002G111900--Sobic006G171100 Sobic005G046400 Sobic005G046400 Sobic002G111900--Sobic005G046400 Sobic006G059800 Sobic006G059800 Sobic002G111900--Sobic006G059800 Sobic006G205700--Sobic002G391400 Sobic006G205700--Sobic003G441800 Sobic006G205700--Sobic004G106100 Sobic003G167300 Sobic003G167300 Sobic006G205700--Sobic003G167300 Sobic006G205700--Sobic010G241900 Sobic006G205700--Sobic005G046400 Sobic006G205700--Sobic007G206800 Sobic006G205700--Sobic003G441601 Sobic003G095100 Sobic003G095100 Sobic006G205700--Sobic003G095100 Sobic006G106900 Sobic006G106900 Sobic001G414800--Sobic006G106900 Sobic001G507100 Sobic001G507100 Sobic001G414800--Sobic001G507100 Sobic001G414800--Sobic010G191600 Sobic001G414800--Sobic007G206800 Sobic003G064800 Sobic003G064800 Sobic001G414800--Sobic003G064800 Sobic001G414800--Sobic005G217766 Sobic001G414800--Sobic005G097400 Sobic007G086300 Sobic007G086300 Sobic001G414800--Sobic007G086300 Sobic008G022100 Sobic008G022100 Sobic001G414800--Sobic008G022100 Sobic007G206800--Sobic002G391400 Sobic007G206800--Sobic002G334000 Sobic007G206800--Sobic007G220400 Sobic007G206800--Sobic010G241900 Sobic007G206800--Sobic010G191700 Sobic007G206800--Sobic006G205700 Sobic005G080600 Sobic005G080600 Sobic007G206800--Sobic005G080600 Sobic007G206800--Sobic002G111900 Sobic007G206800--Sobic002G392100 Sobic003G053200 Sobic003G053200 Sobic003G441800--Sobic003G053200 Sobic003G441700 Sobic003G441700 Sobic003G441800--Sobic003G441700 Sobic003G441800--Sobic003G441601 Sobic003G441800--Sobic005G046400 Sobic003G441800--Sobic006G205700 Sobic004G121600 Sobic004G121600 Sobic003G441800--Sobic004G121600 Sobic005G119900 Sobic005G119900 Sobic003G441800--Sobic005G119900 Sobic007G037600 Sobic007G037600 Sobic003G441800--Sobic007G037600 Sobic009G065700 Sobic009G065700 Sobic003G441800--Sobic009G065700 Sobic010G191700--Sobic010G241900 Sobic010G191700--Sobic002G111900 Sobic010G191700--Sobic007G220400 Sobic010G191700--Sobic002G391300 Sobic010G128300 Sobic010G128300 Sobic010G191700--Sobic010G128300 Sobic010G191700--Sobic002G391400 Sobic010G191700--Sobic003G441601 Sobic010G191700--Sobic007G206800 Sobic005G134200 Sobic005G134200 Sobic010G191700--Sobic005G134200 Sobic004G106100--Sobic007G086300 Sobic004G106100--Sobic006G205700 Sobic004G306900 Sobic004G306900 Sobic004G106100--Sobic004G306900 Sobic003G000100 Sobic003G000100 Sobic004G106100--Sobic003G000100 Sobic010G031700 Sobic010G031700 Sobic004G106100--Sobic010G031700 Sobic003G282300 Sobic003G282300 Sobic004G106100--Sobic003G282300 Sobic004G106100--Sobic002G391400 Sobic002G233200 Sobic002G233200 Sobic004G106100--Sobic002G233200 Sobic010G152400 Sobic010G152400 Sobic004G106100--Sobic010G152400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.