Gene annotation
Transcriptome id Sobic.003G136000.1,Sobic.003G136000.2
Synonym ATRBL14, Sb03g011570, RBL14
Functional annotation OsRhmbd3 - Putative Rhomboid homologue, expressed
UniProt C5XHE9 , A0A1W0VX80
Pfam PF01694
Panther DB PTHR12917 PTHR12917:SF18
NCBI CDD KOG2632; Rhomboid family proteins
KEGG Orthology K09651; rhomboid domain-containing protein 1
Gene Ontology GO:0016021; integral component of membrane GO:0004252serine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT3G17611 : RHOMBOID-like protein 14
RAP-DB (Rice) LOC_Os01g18100.1 : OsRhmbd3 - Putative Rhomboid homologue, expressed
MaizeGDB (Corn) Zm00025a035179 , Zm00025a018379
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G499300 high-affinity nickel-transport family protein, putative, expressed -
2 Sobic.010G223600 ubiquitin family protein, putative, expressed K08770: ubiquitin C
3 Sobic.001G032800 armadillo/beta-catenin-like repeat containing protein, expressed K09562: HSPBP1, hsp70-interacting protein
4 Sobic.004G055200 phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
5 Sobic.010G149300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
6 Sobic.003G130800 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
7 Sobic.003G181500 ZOS1-09 - C2H2 zinc finger protein, expressed -
8 Sobic.001G477300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAM domain containing protein, expressed -
9 Sobic.001G124600 - -
10 Sobic.001G459200 MYB family transcription factor, putative, expressed -
11 Sobic.002G312400 domain of unknown function domain containing protein, expressed -
12 Sobic.002G211900 zinc finger, C3HC4 type domain containing protein, expressed K16274: E3 ubiquitin-protein ligase AIP2
13 Sobic.004G330700 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
14 Sobic.008G033600 Pyruvate kinase family protein(PubMedID : 26465154)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
15 Sobic.001G281400 expressed protein -
16 Sobic.004G187900 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
17 Sobic.006G173900 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
18 Sobic.001G065800 similar to Glutathione transferase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.009G008900 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
20 Sobic.001G393500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ca2+ sensors group(PubMedID : 30367619)@EF hand family protein, putative, expressed K02183: calmodulin


Gene co-expression network
sample Sobic003G136000 Sobic003G136000 Sobic001G499300 Sobic001G499300 Sobic003G136000--Sobic001G499300 Sobic010G223600 Sobic010G223600 Sobic003G136000--Sobic010G223600 Sobic001G032800 Sobic001G032800 Sobic003G136000--Sobic001G032800 Sobic004G055200 Sobic004G055200 Sobic003G136000--Sobic004G055200 Sobic010G149300 Sobic010G149300 Sobic003G136000--Sobic010G149300 Sobic003G130800 Sobic003G130800 Sobic003G136000--Sobic003G130800 Sobic003G181500 Sobic003G181500 Sobic003G136000--Sobic003G181500 Sobic001G477300 Sobic001G477300 Sobic003G136000--Sobic001G477300 Sobic001G124600 Sobic001G124600 Sobic003G136000--Sobic001G124600 Sobic001G281400 Sobic001G281400 Sobic001G499300--Sobic001G281400 Sobic009G008900 Sobic009G008900 Sobic001G499300--Sobic009G008900 Sobic001G177800 Sobic001G177800 Sobic001G499300--Sobic001G177800 Sobic004G187900 Sobic004G187900 Sobic001G499300--Sobic004G187900 Sobic001G459200 Sobic001G459200 Sobic001G499300--Sobic001G459200 Sobic006G173900 Sobic006G173900 Sobic001G499300--Sobic006G173900 Sobic001G393500 Sobic001G393500 Sobic001G499300--Sobic001G393500 Sobic002G312400 Sobic002G312400 Sobic001G499300--Sobic002G312400 Sobic001G499300--Sobic001G477300 Sobic003G393900 Sobic003G393900 Sobic010G223600--Sobic003G393900 Sobic009G036000 Sobic009G036000 Sobic010G223600--Sobic009G036000 Sobic009G247900 Sobic009G247900 Sobic010G223600--Sobic009G247900 Sobic002G339000 Sobic002G339000 Sobic010G223600--Sobic002G339000 Sobic009G122400 Sobic009G122400 Sobic010G223600--Sobic009G122400 Sobic004G169200 Sobic004G169200 Sobic010G223600--Sobic004G169200 Sobic001G471200 Sobic001G471200 Sobic010G223600--Sobic001G471200 Sobic009G224100 Sobic009G224100 Sobic010G223600--Sobic009G224100 Sobic001G035100 Sobic001G035100 Sobic010G223600--Sobic001G035100 Sobic001G032800--Sobic010G223600 Sobic001G426000 Sobic001G426000 Sobic001G032800--Sobic001G426000 Sobic003G310700 Sobic003G310700 Sobic001G032800--Sobic003G310700 Sobic006G267200 Sobic006G267200 Sobic001G032800--Sobic006G267200 Sobic001G032800--Sobic003G136000 Sobic002G211900 Sobic002G211900 Sobic001G032800--Sobic002G211900 Sobic009G169000 Sobic009G169000 Sobic001G032800--Sobic009G169000 Sobic001G320900 Sobic001G320900 Sobic001G032800--Sobic001G320900 Sobic001G108200 Sobic001G108200 Sobic001G032800--Sobic001G108200 Sobic008G033600 Sobic008G033600 Sobic004G055200--Sobic008G033600 Sobic004G055200--Sobic001G459200 Sobic004G055200--Sobic003G130800 Sobic004G330700 Sobic004G330700 Sobic004G055200--Sobic004G330700 Sobic004G055200--Sobic001G281400 Sobic004G055200--Sobic004G187900 Sobic004G055200--Sobic001G499300 Sobic004G055200--Sobic001G477300 Sobic007G051000 Sobic007G051000 Sobic004G055200--Sobic007G051000 Sobic010G149300--Sobic001G281400 Sobic010G086200 Sobic010G086200 Sobic010G149300--Sobic010G086200 Sobic002G267500 Sobic002G267500 Sobic010G149300--Sobic002G267500 Sobic009G143400 Sobic009G143400 Sobic010G149300--Sobic009G143400 Sobic010G149300--Sobic003G181500 Sobic002G046100 Sobic002G046100 Sobic010G149300--Sobic002G046100 Sobic004G177700 Sobic004G177700 Sobic010G149300--Sobic004G177700 Sobic002G345300 Sobic002G345300 Sobic010G149300--Sobic002G345300 Sobic009G129000 Sobic009G129000 Sobic010G149300--Sobic009G129000 Sobic009G185800 Sobic009G185800 Sobic003G130800--Sobic009G185800 Sobic003G253000 Sobic003G253000 Sobic003G130800--Sobic003G253000 Sobic003G130800--Sobic001G459200 Sobic006G180200 Sobic006G180200 Sobic003G130800--Sobic006G180200 Sobic003G130800--Sobic002G345300 Sobic004G049900 Sobic004G049900 Sobic003G130800--Sobic004G049900 Sobic003G130800--Sobic004G055200 Sobic010G135000 Sobic010G135000 Sobic003G130800--Sobic010G135000 Sobic003G130800--Sobic003G181500 Sobic003G181500--Sobic004G187900 Sobic003G350300 Sobic003G350300 Sobic003G181500--Sobic003G350300 Sobic003G181500--Sobic010G149300 Sobic003G249800 Sobic003G249800 Sobic003G181500--Sobic003G249800 Sobic001G288800 Sobic001G288800 Sobic003G181500--Sobic001G288800 Sobic003G181500--Sobic001G281400 Sobic009G023200 Sobic009G023200 Sobic003G181500--Sobic009G023200 Sobic003G181500--Sobic002G211900 Sobic003G181500--Sobic002G046100 Sobic001G477300--Sobic001G124600 Sobic001G477300--Sobic004G187900 Sobic001G477300--Sobic002G046100 Sobic001G308300 Sobic001G308300 Sobic001G477300--Sobic001G308300 Sobic001G477300--Sobic010G086200 Sobic001G477300--Sobic006G267200 Sobic001G477300--Sobic009G129000 Sobic009G159400 Sobic009G159400 Sobic001G477300--Sobic009G159400 Sobic004G065500 Sobic004G065500 Sobic001G477300--Sobic004G065500 Sobic001G124600--Sobic004G187900 Sobic001G124600--Sobic001G477300 Sobic002G393000 Sobic002G393000 Sobic001G124600--Sobic002G393000 Sobic001G038900 Sobic001G038900 Sobic001G124600--Sobic001G038900 Sobic001G124600--Sobic009G008900 Sobic002G140400 Sobic002G140400 Sobic001G124600--Sobic002G140400 Sobic009G141800 Sobic009G141800 Sobic001G124600--Sobic009G141800 Sobic001G119400 Sobic001G119400 Sobic001G124600--Sobic001G119400 Sobic001G124600--Sobic010G086200
Octagon: transcription factors


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