Gene annotation
Transcriptome id Sobic.003G094200.1
Synonym Sb03g007880
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
alanyl-tRNA synthetase, putative, expressed
UniProt A0A1B6Q285
Pfam PF01411
Panther DB PTHR11777 PTHR11777:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006419; alanyl-tRNA aminoacylation GO:0005524ATP binding GO:0004813alanine-tRNA ligase activity GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT3G16565 : alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding
RAP-DB (Rice) LOC_Os01g03030.1 : alanyl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a035500
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G424200 protein kinase, putative, expressed -
2 Sobic.010G178500 Expressed in drought and heat(PubMedID : 29862293)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@endothelial differentiation-related factor 1, putative, expressed K03627: putative transcription factor
3 Sobic.002G104900 B12D protein, putative, expressed -
4 Sobic.009G141800 cytochrome c, putative, expressed K08738: cytochrome c
5 Sobic.001G124600 - -
6 Sobic.001G015100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
7 Sobic.006G131400 expressed protein -
8 Sobic.009G217000 chaperone protein dnaJ 10, putative, expressed -
9 Sobic.004G036600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@activator of 90 kDa heat shock protein ATPase homolog, putative, expressed -
10 Sobic.004G187900 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
11 Sobic.001G317000 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
12 Sobic.005G103300 dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P
13 Sobic.009G121300 transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
14 Sobic.003G288600 reticulon domain containing protein, putative, expressed -
15 Sobic.003G387000 expressed protein -
16 Sobic.007G145600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@4-Coumarate-CoA ligase(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
17 Sobic.010G066601 - -
18 Sobic.002G312400 domain of unknown function domain containing protein, expressed -
19 Sobic.010G217800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.002G294700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -


Gene co-expression network
sample Sobic003G094200 Sobic003G094200 Sobic001G424200 Sobic001G424200 Sobic003G094200--Sobic001G424200 Sobic010G178500 Sobic010G178500 Sobic003G094200--Sobic010G178500 Sobic002G104900 Sobic002G104900 Sobic003G094200--Sobic002G104900 Sobic009G141800 Sobic009G141800 Sobic003G094200--Sobic009G141800 Sobic001G124600 Sobic001G124600 Sobic003G094200--Sobic001G124600 Sobic001G015100 Sobic001G015100 Sobic003G094200--Sobic001G015100 Sobic006G131400 Sobic006G131400 Sobic003G094200--Sobic006G131400 Sobic009G217000 Sobic009G217000 Sobic003G094200--Sobic009G217000 Sobic004G036600 Sobic004G036600 Sobic003G094200--Sobic004G036600 Sobic001G424200--Sobic003G094200 Sobic006G231332 Sobic006G231332 Sobic001G424200--Sobic006G231332 Sobic003G300800 Sobic003G300800 Sobic001G424200--Sobic003G300800 Sobic001G424200--Sobic010G178500 Sobic002G294700 Sobic002G294700 Sobic001G424200--Sobic002G294700 Sobic004G249900 Sobic004G249900 Sobic001G424200--Sobic004G249900 Sobic004G048100 Sobic004G048100 Sobic001G424200--Sobic004G048100 Sobic008G177800 Sobic008G177800 Sobic001G424200--Sobic008G177800 Sobic001G424200--Sobic004G036600 Sobic001G317000 Sobic001G317000 Sobic010G178500--Sobic001G317000 Sobic002G140400 Sobic002G140400 Sobic010G178500--Sobic002G140400 Sobic010G178500--Sobic002G104900 Sobic007G145600 Sobic007G145600 Sobic010G178500--Sobic007G145600 Sobic010G178500--Sobic001G124600 Sobic010G178500--Sobic003G094200 Sobic004G189400 Sobic004G189400 Sobic010G178500--Sobic004G189400 Sobic001G423800 Sobic001G423800 Sobic010G178500--Sobic001G423800 Sobic002G263400 Sobic002G263400 Sobic010G178500--Sobic002G263400 Sobic002G104900--Sobic001G317000 Sobic002G104900--Sobic007G145600 Sobic002G104900--Sobic010G178500 Sobic002G104900--Sobic001G015100 Sobic002G104900--Sobic009G141800 Sobic002G104900--Sobic002G140400 Sobic004G088551 Sobic004G088551 Sobic002G104900--Sobic004G088551 Sobic002G104900--Sobic003G094200 Sobic002G104900--Sobic002G263400 Sobic006G267200 Sobic006G267200 Sobic009G141800--Sobic006G267200 Sobic010G086200 Sobic010G086200 Sobic009G141800--Sobic010G086200 Sobic003G393900 Sobic003G393900 Sobic009G141800--Sobic003G393900 Sobic004G065500 Sobic004G065500 Sobic009G141800--Sobic004G065500 Sobic004G187900 Sobic004G187900 Sobic009G141800--Sobic004G187900 Sobic001G281400 Sobic001G281400 Sobic009G141800--Sobic001G281400 Sobic009G008900 Sobic009G008900 Sobic009G141800--Sobic009G008900 Sobic003G387000 Sobic003G387000 Sobic009G141800--Sobic003G387000 Sobic001G459800 Sobic001G459800 Sobic009G141800--Sobic001G459800 Sobic001G124600--Sobic004G187900 Sobic001G477300 Sobic001G477300 Sobic001G124600--Sobic001G477300 Sobic002G393000 Sobic002G393000 Sobic001G124600--Sobic002G393000 Sobic001G038900 Sobic001G038900 Sobic001G124600--Sobic001G038900 Sobic001G124600--Sobic009G008900 Sobic001G124600--Sobic002G140400 Sobic001G124600--Sobic009G141800 Sobic001G119400 Sobic001G119400 Sobic001G124600--Sobic001G119400 Sobic001G124600--Sobic010G086200 Sobic001G015100--Sobic002G140400 Sobic001G015100--Sobic004G187900 Sobic003G430400 Sobic003G430400 Sobic001G015100--Sobic003G430400 Sobic007G155200 Sobic007G155200 Sobic001G015100--Sobic007G155200 Sobic001G015100--Sobic001G124600 Sobic001G015100--Sobic001G423800 Sobic010G238600 Sobic010G238600 Sobic001G015100--Sobic010G238600 Sobic001G015100--Sobic001G038900 Sobic002G211900 Sobic002G211900 Sobic001G015100--Sobic002G211900 Sobic001G516600 Sobic001G516600 Sobic006G131400--Sobic001G516600 Sobic006G131400--Sobic003G094200 Sobic002G343500 Sobic002G343500 Sobic006G131400--Sobic002G343500 Sobic003G285800 Sobic003G285800 Sobic006G131400--Sobic003G285800 Sobic009G033700 Sobic009G033700 Sobic006G131400--Sobic009G033700 Sobic004G318100 Sobic004G318100 Sobic006G131400--Sobic004G318100 Sobic009G129000 Sobic009G129000 Sobic006G131400--Sobic009G129000 Sobic001G107400 Sobic001G107400 Sobic006G131400--Sobic001G107400 Sobic006G131400--Sobic004G036600 Sobic009G217000--Sobic004G036600 Sobic009G217000--Sobic003G094200 Sobic003G310700 Sobic003G310700 Sobic009G217000--Sobic003G310700 Sobic010G065900 Sobic010G065900 Sobic009G217000--Sobic010G065900 Sobic009G217000--Sobic006G131400 Sobic009G217000--Sobic004G065500 Sobic009G217000--Sobic009G141800 Sobic005G028700 Sobic005G028700 Sobic009G217000--Sobic005G028700 Sobic009G217000--Sobic006G267200 Sobic004G036600--Sobic002G294700 Sobic004G036600--Sobic008G177800 Sobic006G231100 Sobic006G231100 Sobic004G036600--Sobic006G231100 Sobic001G173300 Sobic001G173300 Sobic004G036600--Sobic001G173300 Sobic010G234600 Sobic010G234600 Sobic004G036600--Sobic010G234600 Sobic004G036600--Sobic001G516600 Sobic002G374100 Sobic002G374100 Sobic004G036600--Sobic002G374100 Sobic004G036600--Sobic009G141800 Sobic004G036600--Sobic009G217000
Octagon: transcription factors


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