Gene annotation
Transcriptome id Sobic.006G204300.1
Synonym Sb06g027540, SbTri07;SbTri07
Functional annotation Trihelix Family (PubMedID : 24864043)
SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
transcription factor TF2, putative, expressed
UniProt C5YF69
Pfam PF13837
Panther DB PTHR10032 PTHR10032:SF204
NCBI CDD KOG4282; Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain
KEGG Orthology -
Gene Ontology GO:0006351; transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT2G38250 : Homeodomain-like superfamily protein
RAP-DB (Rice) LOC_Os04g51320.1 : transcription factor TF2, putative, expressed
MaizeGDB (Corn) Zm00025a056951 , Zm00025a009925
Brachypodium PNT61797
Barley HORVU2Hr1G101600.5 , HORVU2Hr1G101600.2
Wheat TraesCS2B02G457200 , TraesCS2D02G433900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
2 Sobic.001G025300 hydrolase, alpha/beta fold family domain containing protein, expressed -
3 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -
4 Sobic.002G183200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
5 Sobic.002G282400 expressed protein -
6 Sobic.007G107000 pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
7 Sobic.009G143400 chitin-inducible gibberellin-responsive protein, putative, expressed -
8 Sobic.004G144500 aspartic proteinase-like protein 2 precursor, putative, expressed -
9 Sobic.002G345300 ZOS7-05 - C2H2 zinc finger protein, expressed -
10 Sobic.004G177700 AIG1, putative, expressed -
11 Sobic.009G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
12 Sobic.003G379800 armadillo/beta-catenin repeat family protein, putative, expressed -
13 Sobic.001G252300 pectinesterase, putative, expressed K01051: pectinesterase
14 Sobic.002G423300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.004G166700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Beta-fructofuranosidase, cell wall Invertase 2 (Os)"(PubMedID : 27208977)@glycosyl hydrolases, putative, expressed K01193: INV, beta-fructofuranosidase
16 Sobic.009G234100 WRKY49, expressed -
17 Sobic.008G185400 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
18 Sobic.001G281400 expressed protein -
19 Sobic.001G019900 zinc finger, C3HC4 type domain containing protein, expressed K15707: RING finger protein 170
20 Sobic.002G261800 snRK1-interacting protein 1, putative, expressed -


Gene co-expression network
sample Sobic006G204300 Sobic006G204300 Sobic002G046100 Sobic002G046100 Sobic006G204300--Sobic002G046100 Sobic001G025300 Sobic001G025300 Sobic006G204300--Sobic001G025300 Sobic002G267500 Sobic002G267500 Sobic006G204300--Sobic002G267500 Sobic002G183200 Sobic002G183200 Sobic006G204300--Sobic002G183200 Sobic002G282400 Sobic002G282400 Sobic006G204300--Sobic002G282400 Sobic007G107000 Sobic007G107000 Sobic006G204300--Sobic007G107000 Sobic009G143400 Sobic009G143400 Sobic006G204300--Sobic009G143400 Sobic004G144500 Sobic004G144500 Sobic006G204300--Sobic004G144500 Sobic002G345300 Sobic002G345300 Sobic006G204300--Sobic002G345300 Sobic003G285800 Sobic003G285800 Sobic002G046100--Sobic003G285800 Sobic001G281400 Sobic001G281400 Sobic002G046100--Sobic001G281400 Sobic002G046100--Sobic002G345300 Sobic002G187500 Sobic002G187500 Sobic002G046100--Sobic002G187500 Sobic010G086200 Sobic010G086200 Sobic002G046100--Sobic010G086200 Sobic004G061200 Sobic004G061200 Sobic002G046100--Sobic004G061200 Sobic001G477300 Sobic001G477300 Sobic002G046100--Sobic001G477300 Sobic002G046100--Sobic002G267500 Sobic002G190900 Sobic002G190900 Sobic002G046100--Sobic002G190900 Sobic001G025101 Sobic001G025101 Sobic001G025300--Sobic001G025101 Sobic002G416600 Sobic002G416600 Sobic001G025300--Sobic002G416600 Sobic001G025300--Sobic002G183200 Sobic003G286600 Sobic003G286600 Sobic001G025300--Sobic003G286600 Sobic005G051200 Sobic005G051200 Sobic001G025300--Sobic005G051200 Sobic001G317200 Sobic001G317200 Sobic001G025300--Sobic001G317200 Sobic004G166700 Sobic004G166700 Sobic001G025300--Sobic004G166700 Sobic006G099900 Sobic006G099900 Sobic001G025300--Sobic006G099900 Sobic001G070800 Sobic001G070800 Sobic001G025300--Sobic001G070800 Sobic002G267500--Sobic001G281400 Sobic004G272800 Sobic004G272800 Sobic002G267500--Sobic004G272800 Sobic002G267500--Sobic002G046100 Sobic003G253000 Sobic003G253000 Sobic002G267500--Sobic003G253000 Sobic010G149300 Sobic010G149300 Sobic002G267500--Sobic010G149300 Sobic002G267500--Sobic002G345300 Sobic001G459200 Sobic001G459200 Sobic002G267500--Sobic001G459200 Sobic002G267500--Sobic009G143400 Sobic006G173900 Sobic006G173900 Sobic002G267500--Sobic006G173900 Sobic002G183200--Sobic003G286600 Sobic005G091500 Sobic005G091500 Sobic002G183200--Sobic005G091500 Sobic004G189400 Sobic004G189400 Sobic002G183200--Sobic004G189400 Sobic002G183200--Sobic001G025300 Sobic001G119100 Sobic001G119100 Sobic002G183200--Sobic001G119100 Sobic010G176600 Sobic010G176600 Sobic002G183200--Sobic010G176600 Sobic002G183200--Sobic006G099900 Sobic002G183200--Sobic001G317200 Sobic010G084400 Sobic010G084400 Sobic002G183200--Sobic010G084400 Sobic003G249800 Sobic003G249800 Sobic002G282400--Sobic003G249800 Sobic010G243200 Sobic010G243200 Sobic002G282400--Sobic010G243200 Sobic002G282400--Sobic009G143400 Sobic006G141500 Sobic006G141500 Sobic002G282400--Sobic006G141500 Sobic003G181500 Sobic003G181500 Sobic002G282400--Sobic003G181500 Sobic001G037000 Sobic001G037000 Sobic002G282400--Sobic001G037000 Sobic001G071100 Sobic001G071100 Sobic002G282400--Sobic001G071100 Sobic002G211900 Sobic002G211900 Sobic002G282400--Sobic002G211900 Sobic002G393000 Sobic002G393000 Sobic002G282400--Sobic002G393000 Sobic009G070400 Sobic009G070400 Sobic007G107000--Sobic009G070400 Sobic007G107000--Sobic001G025300 Sobic007G107000--Sobic002G183200 Sobic009G221400 Sobic009G221400 Sobic007G107000--Sobic009G221400 Sobic007G107000--Sobic003G286600 Sobic007G107000--Sobic010G176600 Sobic002G212200 Sobic002G212200 Sobic007G107000--Sobic002G212200 Sobic007G107000--Sobic002G393000 Sobic007G025500 Sobic007G025500 Sobic007G107000--Sobic007G025500 Sobic009G143400--Sobic010G086200 Sobic003G393700 Sobic003G393700 Sobic009G143400--Sobic003G393700 Sobic009G143400--Sobic004G061200 Sobic003G379800 Sobic003G379800 Sobic009G143400--Sobic003G379800 Sobic009G143400--Sobic001G281400 Sobic009G143400--Sobic002G046100 Sobic009G143400--Sobic010G149300 Sobic009G143400--Sobic002G190900 Sobic009G033700 Sobic009G033700 Sobic009G143400--Sobic009G033700 Sobic004G144500--Sobic004G166700 Sobic009G230100 Sobic009G230100 Sobic004G144500--Sobic009G230100 Sobic001G252300 Sobic001G252300 Sobic004G144500--Sobic001G252300 Sobic004G144500--Sobic001G025300 Sobic007G087200 Sobic007G087200 Sobic004G144500--Sobic007G087200 Sobic010G209900 Sobic010G209900 Sobic004G144500--Sobic010G209900 Sobic009G229000 Sobic009G229000 Sobic004G144500--Sobic009G229000 Sobic002G312900 Sobic002G312900 Sobic004G144500--Sobic002G312900 Sobic008G032100 Sobic008G032100 Sobic004G144500--Sobic008G032100 Sobic002G345300--Sobic002G046100 Sobic003G350300 Sobic003G350300 Sobic002G345300--Sobic003G350300 Sobic002G345300--Sobic001G281400 Sobic010G178200 Sobic010G178200 Sobic002G345300--Sobic010G178200 Sobic002G345300--Sobic002G267500 Sobic002G345300--Sobic003G253000 Sobic002G345300--Sobic003G285800 Sobic002G345300--Sobic004G272800 Sobic002G345300--Sobic010G149300
Octagon: transcription factors


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