Gene annotation
Transcriptome id Sobic.004G179600.1
Synonym Sb04g022920, SIR5, CNX7
Functional annotation VP15, putative, expressed
UniProt C5XUW2
Pfam PF02597
Panther DB PTHR33359 PTHR33359:SF1
NCBI CDD KOG3474; Molybdopterin converting factor, small subunit
KEGG Orthology K03635; MOCS2B, molybdopterin synthase catalytic subunit
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G10100 : co-factor for nitrate, reductase and xanthine dehydrogenase 7
RAP-DB (Rice) LOC_Os02g35200.1 : VP15, putative, expressed
MaizeGDB (Corn) Zm00025a020712
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G025500 amino acid transporter, putative, expressed -
2 Sobic.007G107000 pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
3 Sobic.002G212200 protein binding protein, putative, expressed K11975: E3 ubiquitin-protein ligase RNF144
4 Sobic.002G319100 hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
5 Sobic.009G023200 glycine-rich protein A3, putative, expressed -
6 Sobic.003G362100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transmembrane amino acid transporter protein, putative, expressed -
7 Sobic.005G228000 SNF7 domain containing protein, putative, expressed K12191: charged multivesicular body protein 2A
8 Sobic.001G019900 zinc finger, C3HC4 type domain containing protein, expressed K15707: RING finger protein 170
9 Sobic.001G252300 pectinesterase, putative, expressed K01051: pectinesterase
10 Sobic.004G192100 uncharacterized Cys-rich domain containing protein, putative, expressed -
11 Sobic.009G230100 expressed protein -
12 Sobic.004G144500 aspartic proteinase-like protein 2 precursor, putative, expressed -
13 Sobic.001G084900 expressed protein -
14 Sobic.006G159300 remorin, putative, expressed -
15 Sobic.003G162700 expressed protein -
16 Sobic.009G077800 expressed protein -
17 Sobic.004G166400 expressed protein -
18 Sobic.005G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.001G067601 - K17553: protein phosphatase 1 regulatory subunit 11
20 Sobic.004G157000 protein kinase domain containing protein, expressed K13430: serine/threonine-protein kinase PBS1


Gene co-expression network
sample Sobic004G179600 Sobic004G179600 Sobic007G025500 Sobic007G025500 Sobic004G179600--Sobic007G025500 Sobic007G107000 Sobic007G107000 Sobic004G179600--Sobic007G107000 Sobic002G212200 Sobic002G212200 Sobic004G179600--Sobic002G212200 Sobic002G319100 Sobic002G319100 Sobic004G179600--Sobic002G319100 Sobic009G023200 Sobic009G023200 Sobic004G179600--Sobic009G023200 Sobic003G362100 Sobic003G362100 Sobic004G179600--Sobic003G362100 Sobic005G228000 Sobic005G228000 Sobic004G179600--Sobic005G228000 Sobic001G019900 Sobic001G019900 Sobic004G179600--Sobic001G019900 Sobic001G252300 Sobic001G252300 Sobic004G179600--Sobic001G252300 Sobic002G034800 Sobic002G034800 Sobic007G025500--Sobic002G034800 Sobic001G119400 Sobic001G119400 Sobic007G025500--Sobic001G119400 Sobic003G297600 Sobic003G297600 Sobic007G025500--Sobic003G297600 Sobic002G366600 Sobic002G366600 Sobic007G025500--Sobic002G366600 Sobic009G139400 Sobic009G139400 Sobic007G025500--Sobic009G139400 Sobic010G066700 Sobic010G066700 Sobic007G025500--Sobic010G066700 Sobic009G183400 Sobic009G183400 Sobic007G025500--Sobic009G183400 Sobic009G077800 Sobic009G077800 Sobic007G025500--Sobic009G077800 Sobic010G136000 Sobic010G136000 Sobic007G025500--Sobic010G136000 Sobic009G070400 Sobic009G070400 Sobic007G107000--Sobic009G070400 Sobic001G025300 Sobic001G025300 Sobic007G107000--Sobic001G025300 Sobic002G183200 Sobic002G183200 Sobic007G107000--Sobic002G183200 Sobic009G221400 Sobic009G221400 Sobic007G107000--Sobic009G221400 Sobic003G286600 Sobic003G286600 Sobic007G107000--Sobic003G286600 Sobic010G176600 Sobic010G176600 Sobic007G107000--Sobic010G176600 Sobic007G107000--Sobic002G212200 Sobic002G393000 Sobic002G393000 Sobic007G107000--Sobic002G393000 Sobic007G107000--Sobic007G025500 Sobic002G212200--Sobic005G228000 Sobic002G212200--Sobic001G019900 Sobic001G067601 Sobic001G067601 Sobic002G212200--Sobic001G067601 Sobic002G212200--Sobic007G107000 Sobic003G181500 Sobic003G181500 Sobic002G212200--Sobic003G181500 Sobic003G162700 Sobic003G162700 Sobic002G212200--Sobic003G162700 Sobic002G212200--Sobic009G023200 Sobic002G282400 Sobic002G282400 Sobic002G212200--Sobic002G282400 Sobic001G064800 Sobic001G064800 Sobic002G212200--Sobic001G064800 Sobic002G319100--Sobic007G025500 Sobic008G113000 Sobic008G113000 Sobic002G319100--Sobic008G113000 Sobic002G319100--Sobic003G162700 Sobic001G339801 Sobic001G339801 Sobic002G319100--Sobic001G339801 Sobic001G091600 Sobic001G091600 Sobic002G319100--Sobic001G091600 Sobic003G078100 Sobic003G078100 Sobic002G319100--Sobic003G078100 Sobic007G187800 Sobic007G187800 Sobic002G319100--Sobic007G187800 Sobic003G041600 Sobic003G041600 Sobic002G319100--Sobic003G041600 Sobic006G246100 Sobic006G246100 Sobic002G319100--Sobic006G246100 Sobic004G187900 Sobic004G187900 Sobic009G023200--Sobic004G187900 Sobic010G204600 Sobic010G204600 Sobic009G023200--Sobic010G204600 Sobic003G063200 Sobic003G063200 Sobic009G023200--Sobic003G063200 Sobic009G023200--Sobic001G067601 Sobic002G046100 Sobic002G046100 Sobic009G023200--Sobic002G046100 Sobic002G245800 Sobic002G245800 Sobic009G023200--Sobic002G245800 Sobic009G023200--Sobic003G181500 Sobic003G202200 Sobic003G202200 Sobic009G023200--Sobic003G202200 Sobic005G196800 Sobic005G196800 Sobic009G023200--Sobic005G196800 Sobic010G009300 Sobic010G009300 Sobic003G362100--Sobic010G009300 Sobic001G348700 Sobic001G348700 Sobic003G362100--Sobic001G348700 Sobic004G111800 Sobic004G111800 Sobic003G362100--Sobic004G111800 Sobic005G038900 Sobic005G038900 Sobic003G362100--Sobic005G038900 Sobic003G362100--Sobic001G252300 Sobic003G252800 Sobic003G252800 Sobic003G362100--Sobic003G252800 Sobic008G060050 Sobic008G060050 Sobic003G362100--Sobic008G060050 Sobic008G032100 Sobic008G032100 Sobic003G362100--Sobic008G032100 Sobic010G117900 Sobic010G117900 Sobic003G362100--Sobic010G117900 Sobic005G228000--Sobic001G019900 Sobic005G228000--Sobic002G212200 Sobic005G228000--Sobic001G067601 Sobic002G345300 Sobic002G345300 Sobic005G228000--Sobic002G345300 Sobic005G228000--Sobic009G023200 Sobic004G157000 Sobic004G157000 Sobic005G228000--Sobic004G157000 Sobic003G350300 Sobic003G350300 Sobic005G228000--Sobic003G350300 Sobic009G094450 Sobic009G094450 Sobic005G228000--Sobic009G094450 Sobic010G047400 Sobic010G047400 Sobic005G228000--Sobic010G047400 Sobic001G019900--Sobic001G067601 Sobic001G019900--Sobic005G228000 Sobic001G019900--Sobic009G023200 Sobic001G019900--Sobic003G350300 Sobic003G249800 Sobic003G249800 Sobic001G019900--Sobic003G249800 Sobic001G019900--Sobic002G046100 Sobic001G445800 Sobic001G445800 Sobic001G019900--Sobic001G445800 Sobic001G019900--Sobic002G212200 Sobic003G321700 Sobic003G321700 Sobic001G019900--Sobic003G321700 Sobic002G414600 Sobic002G414600 Sobic001G252300--Sobic002G414600 Sobic004G166700 Sobic004G166700 Sobic001G252300--Sobic004G166700 Sobic005G051200 Sobic005G051200 Sobic001G252300--Sobic005G051200 Sobic004G208700 Sobic004G208700 Sobic001G252300--Sobic004G208700 Sobic001G317200 Sobic001G317200 Sobic001G252300--Sobic001G317200 Sobic001G252300--Sobic003G297600 Sobic002G416600 Sobic002G416600 Sobic001G252300--Sobic002G416600 Sobic008G050600 Sobic008G050600 Sobic001G252300--Sobic008G050600 Sobic001G252300--Sobic003G286600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.