Gene annotation
Transcriptome id Sobic.003G362100.1
Synonym ATGAT1, GAT1, Sb03g040380
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
transmembrane amino acid transporter protein, putative, expressed
UniProt C5XQH0
Pfam PF01490
Panther DB PTHR22950 PTHR22950:SF319
NCBI CDD KOG1303; Amino acid transporters
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G08230 : Transmembrane amino acid transporter family protein
RAP-DB (Rice) LOC_Os01g63854.1 : transmembrane amino acid transporter protein, putative, expressed
MaizeGDB (Corn) Zm00025a026793
Brachypodium KQK10658
Barley HORVU3Hr1G084620.11 , HORVU3Hr1G084620.10 , HORVU3Hr1G084620.9 , HORVU3Hr1G084620.8 , HORVU3Hr1G084620.1 , HORVU3Hr1G084620.3 , HORVU3Hr1G084620.2 , HORVU3Hr1G084620.5 , HORVU3Hr1G084620.4 , HORVU3Hr1G084620.7 , HORVU3Hr1G084620.6
Wheat TraesCS3D02G363200 , TraesCS3B02G402200 , TraesCS3A02G370300
Populus -


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cDNA sequences
Sobic.003G362100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G009300 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed K00033: PGD, gnd, 6-phosphogluconate dehydrogenase
2 Sobic.001G348700 - -
3 Sobic.004G111800 VQ domain containing protein, putative, expressed -
4 Sobic.005G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.001G252300 pectinesterase, putative, expressed K01051: pectinesterase
6 Sobic.003G252800 hypothetical protein -
7 Sobic.008G060050 - -
8 Sobic.008G032100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.010G117900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
10 Sobic.010G209900 phospholipase D. Active site motif family protein, expressed K16860: phospholipase D3/4
11 Sobic.004G221500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein K13113: UBL5, ubiquitin-like protein 5
12 Sobic.006G084600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@amino acid permease family protein, putative, expressed -
13 Sobic.003G437200 sulfotransferase domain containing protein, expressed -
14 Sobic.007G025500 amino acid transporter, putative, expressed -
15 Sobic.005G206601 - -
16 Sobic.006G107200 molybdopterin biosynthesis protein CNX3, putative, expressed K03639: moaA, GTP 3',8-cyclase
17 Sobic.003G240600 VQ domain containing protein, putative, expressed -
18 Sobic.001G317200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.001G346000 UNE2, putative, expressed -
20 Sobic.005G084600 ARGOS, putative, expressed -


Gene co-expression network
sample Sobic003G362100 Sobic003G362100 Sobic010G009300 Sobic010G009300 Sobic003G362100--Sobic010G009300 Sobic001G348700 Sobic001G348700 Sobic003G362100--Sobic001G348700 Sobic004G111800 Sobic004G111800 Sobic003G362100--Sobic004G111800 Sobic005G038900 Sobic005G038900 Sobic003G362100--Sobic005G038900 Sobic001G252300 Sobic001G252300 Sobic003G362100--Sobic001G252300 Sobic003G252800 Sobic003G252800 Sobic003G362100--Sobic003G252800 Sobic008G060050 Sobic008G060050 Sobic003G362100--Sobic008G060050 Sobic008G032100 Sobic008G032100 Sobic003G362100--Sobic008G032100 Sobic010G117900 Sobic010G117900 Sobic003G362100--Sobic010G117900 Sobic001G177800 Sobic001G177800 Sobic010G009300--Sobic001G177800 Sobic007G184600 Sobic007G184600 Sobic010G009300--Sobic007G184600 Sobic009G139400 Sobic009G139400 Sobic010G009300--Sobic009G139400 Sobic002G187500 Sobic002G187500 Sobic010G009300--Sobic002G187500 Sobic002G190900 Sobic002G190900 Sobic010G009300--Sobic002G190900 Sobic010G009300--Sobic001G252300 Sobic009G077800 Sobic009G077800 Sobic010G009300--Sobic009G077800 Sobic006G099900 Sobic006G099900 Sobic010G009300--Sobic006G099900 Sobic004G107700 Sobic004G107700 Sobic010G009300--Sobic004G107700 Sobic001G348700--Sobic003G252800 Sobic004G221500 Sobic004G221500 Sobic001G348700--Sobic004G221500 Sobic010G084700 Sobic010G084700 Sobic001G348700--Sobic010G084700 Sobic006G084600 Sobic006G084600 Sobic001G348700--Sobic006G084600 Sobic001G348700--Sobic010G117900 Sobic005G206601 Sobic005G206601 Sobic001G348700--Sobic005G206601 Sobic004G216600 Sobic004G216600 Sobic001G348700--Sobic004G216600 Sobic001G348700--Sobic006G099900 Sobic001G317200 Sobic001G317200 Sobic001G348700--Sobic001G317200 Sobic001G444400 Sobic001G444400 Sobic004G111800--Sobic001G444400 Sobic010G084400 Sobic010G084400 Sobic004G111800--Sobic010G084400 Sobic006G153100 Sobic006G153100 Sobic004G111800--Sobic006G153100 Sobic009G106800 Sobic009G106800 Sobic004G111800--Sobic009G106800 Sobic004G111800--Sobic003G252800 Sobic005G101800 Sobic005G101800 Sobic004G111800--Sobic005G101800 Sobic004G111800--Sobic005G206601 Sobic004G111800--Sobic001G348700 Sobic001G339700 Sobic001G339700 Sobic004G111800--Sobic001G339700 Sobic005G038900--Sobic003G362100 Sobic007G025500 Sobic007G025500 Sobic005G038900--Sobic007G025500 Sobic004G088551 Sobic004G088551 Sobic005G038900--Sobic004G088551 Sobic005G038900--Sobic004G216600 Sobic006G173900 Sobic006G173900 Sobic005G038900--Sobic006G173900 Sobic005G038900--Sobic008G032100 Sobic007G145600 Sobic007G145600 Sobic005G038900--Sobic007G145600 Sobic005G038900--Sobic010G009300 Sobic010G071900 Sobic010G071900 Sobic005G038900--Sobic010G071900 Sobic002G414600 Sobic002G414600 Sobic001G252300--Sobic002G414600 Sobic004G166700 Sobic004G166700 Sobic001G252300--Sobic004G166700 Sobic005G051200 Sobic005G051200 Sobic001G252300--Sobic005G051200 Sobic004G208700 Sobic004G208700 Sobic001G252300--Sobic004G208700 Sobic001G252300--Sobic001G317200 Sobic003G297600 Sobic003G297600 Sobic001G252300--Sobic003G297600 Sobic002G416600 Sobic002G416600 Sobic001G252300--Sobic002G416600 Sobic008G050600 Sobic008G050600 Sobic001G252300--Sobic008G050600 Sobic003G286600 Sobic003G286600 Sobic001G252300--Sobic003G286600 Sobic003G252800--Sobic006G099900 Sobic003G252800--Sobic010G084400 Sobic003G252800--Sobic001G348700 Sobic003G252800--Sobic001G317200 Sobic003G252800--Sobic005G101800 Sobic007G227300 Sobic007G227300 Sobic003G252800--Sobic007G227300 Sobic003G252800--Sobic010G117900 Sobic009G128700 Sobic009G128700 Sobic003G252800--Sobic009G128700 Sobic003G252800--Sobic004G221500 Sobic002G368500 Sobic002G368500 Sobic008G060050--Sobic002G368500 Sobic003G240600 Sobic003G240600 Sobic008G060050--Sobic003G240600 Sobic008G060050--Sobic006G084600 Sobic008G060050--Sobic001G348700 Sobic003G317100 Sobic003G317100 Sobic008G060050--Sobic003G317100 Sobic004G071650 Sobic004G071650 Sobic008G060050--Sobic004G071650 Sobic001G487300 Sobic001G487300 Sobic008G060050--Sobic001G487300 Sobic003G437200 Sobic003G437200 Sobic008G060050--Sobic003G437200 Sobic008G060050--Sobic003G362100 Sobic008G032100--Sobic010G009300 Sobic005G084600 Sobic005G084600 Sobic008G032100--Sobic005G084600 Sobic007G087200 Sobic007G087200 Sobic008G032100--Sobic007G087200 Sobic008G032100--Sobic001G177800 Sobic005G195301 Sobic005G195301 Sobic008G032100--Sobic005G195301 Sobic008G032100--Sobic002G187500 Sobic008G032100--Sobic009G077800 Sobic003G113700 Sobic003G113700 Sobic008G032100--Sobic003G113700 Sobic008G032100--Sobic005G206601 Sobic010G117900--Sobic005G101800 Sobic010G117900--Sobic003G252800 Sobic010G117900--Sobic010G084700 Sobic010G117900--Sobic007G227300 Sobic010G117900--Sobic004G221500 Sobic010G117900--Sobic010G084400 Sobic007G067600 Sobic007G067600 Sobic010G117900--Sobic007G067600 Sobic002G195400 Sobic002G195400 Sobic010G117900--Sobic002G195400 Sobic010G117900--Sobic001G348700
Octagon: transcription factors


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