Gene annotation
Transcriptome id Sobic.001G301500.1
Synonym Sb01g029330, EXPB2, ATHEXPBETA1.4, ATEXPB2
Functional annotation expansin precursor, putative, expressed
UniProt C5WSF9
Pfam PF01357 PF03330
Panther DB PTHR31692:SF17 PTHR31692
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65680 : expansin B2
RAP-DB (Rice) LOC_Os10g40720.1 : expansin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a051980 , Zm00025a051981 , Zm00025a032217 , Zm00025a051978 , Zm00025a051986 , Zm00025a052026 , Zm00025a052035 , Zm00025a052033 , Zm00025a003339 , Zm00025a003330 , Zm00025a000113 , Zm00025a020874
Brachypodium KQK07389 , KQJ97766 , KQJ97764 , KQJ97763 , KQJ97762 , KQJ97768 , KQK24134
Barley HORVU1Hr1G054240.1 , HORVU1Hr1G054240.2 , HORVU0Hr1G005490.2 , HORVU0Hr1G005490.1 , HORVU5Hr1G019100.10 , HORVU4Hr1G088080.8 , HORVU4Hr1G088080.9 , HORVU4Hr1G088080.2 , HORVU4Hr1G088080.3 , HORVU4Hr1G088080.6 , HORVU4Hr1G088080.7 , HORVU4Hr1G088080.4 , HORVU4Hr1G088080.5 , HORVU6Hr1G005760.1 , HORVU5Hr1G019100.8 , HORVU5Hr1G019100.9 , HORVU3Hr1G001920.1 , HORVU3Hr1G001920.3 , HORVU3Hr1G001920.2 , HORVU5Hr1G019100.1 , HORVU5Hr1G019100.2 , HORVU5Hr1G019100.3 , HORVU5Hr1G019100.4 , HORVU5Hr1G019100.5 , HORVU5Hr1G019100.6 , HORVU5Hr1G019100.7 , HORVU1Hr1G054210.5 , HORVU1Hr1G054210.4 , HORVU1Hr1G054210.2 , HORVU1Hr1G054210.1 , HORVU1Hr1G054250.9 , HORVU1Hr1G054250.8 , HORVU6Hr1G005810.2 , HORVU6Hr1G005810.3 , HORVU1Hr1G054250.7 , HORVU1Hr1G054250.5 , HORVU3Hr1G073140.1 , HORVU4Hr1G088080.10 , HORVU4Hr1G088080.11 , HORVU4Hr1G088080.12 , HORVU4Hr1G088080.13 , HORVU3Hr1G105170.1 , HORVU3Hr1G105520.2 , HORVU3Hr1G105520.1 , HORVU5Hr1G019100.12 , HORVU5Hr1G019100.11 , HORVU3Hr1G076110.1 , HORVU6Hr1G005810.4
Wheat TraesCS5D02G086000 , TraesCS1D02G215100 , TraesCS1B02G226000 , TraesCS3D02G476800 , TraesCS5B02G079400 , TraesCS3B02G524500 , TraesCS2A02G105200 , TraesCS6D02G037700 , TraesCS3A02G480000 , TraesCS1A02G212200 , TraesCS1D02G215100 , TraesCSU02G085500 , TraesCS3B02G014300 , TraesCS4D02G361700 , TraesCS6D02G037500 , TraesCS1B02G225700 , TraesCS1B02G225700 , TraesCS5A02G537300 , TraesCS1B02G226100 , TraesCS1B02G226000 , TraesCS1B02G225900 , TraesCS1A02G212300 , TraesCS6A02G032700 , TraesCS6B02G046100 , TraesCS3B02G014400 , TraesCS1A02G212000 , TraesCS6B02G046200 , TraesCS2A02G458900 , TraesCS1D02G215300 , TraesCS1A02G212600 , TraesCS5A02G073100 , TraesCS1B02G225800 , TraesCS1A02G212400 , TraesCS3A02G011100 , TraesCS3D02G000400 , TraesCS3A02G479900 , TraesCS1D02G215400 , TraesCS4B02G375600 , TraesCS1D02G215200 , TraesCS6B02G046300 , TraesCS3B02G526800 , TraesCS6B02G046000 , TraesCS2B02G122100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G301500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G301600 expansin precursor, putative, expressed -
2 Sobic.005G222800 - -
3 Sobic.003G069100 regulator of ribonuclease, putative, expressed -
4 Sobic.001G300800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -
5 Sobic.003G404900 regulatory protein, putative, expressed -
6 Sobic.001G355600 helix-loop-helix DNA-binding domain containing protein, expressed -
7 Sobic.008G105850 - -
8 Sobic.001G215600 cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
9 Sobic.001G208100 alpha-galactosidase precursor, putative, expressed K07407: E3.2.1.22B, galA, alpha-galactosidase
10 Sobic.001G361700 expressed protein -
11 Sobic.005G154100 OsWAK98 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed -
12 Sobic.003G069000 transferase family protein, putative, expressed -
13 Sobic.003G237600 expressed protein -
14 Sobic.008G106200 cytochrome P450, putative, expressed -
15 Sobic.002G357000 peroxidase precursor, putative, expressed K00430: peroxidase
16 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
17 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
18 Sobic.003G445100 RNA recognition motif containing protein, putative, expressed K13195: cold-inducible RNA-binding protein
19 Sobic.003G118800 - -
20 Sobic.008G088000 CRAL/TRIO domain containing protein, expressed -


Gene co-expression network
sample Sobic001G301500 Sobic001G301500 Sobic001G301600 Sobic001G301600 Sobic001G301500--Sobic001G301600 Sobic005G222800 Sobic005G222800 Sobic001G301500--Sobic005G222800 Sobic003G069100 Sobic003G069100 Sobic001G301500--Sobic003G069100 Sobic001G300800 Sobic001G300800 Sobic001G301500--Sobic001G300800 Sobic003G404900 Sobic003G404900 Sobic001G301500--Sobic003G404900 Sobic001G355600 Sobic001G355600 Sobic001G301500--Sobic001G355600 Sobic008G105850 Sobic008G105850 Sobic001G301500--Sobic008G105850 Sobic001G215600 Sobic001G215600 Sobic001G301500--Sobic001G215600 Sobic001G208100 Sobic001G208100 Sobic001G301500--Sobic001G208100 Sobic003G344700 Sobic003G344700 Sobic001G301600--Sobic003G344700 Sobic003G371100 Sobic003G371100 Sobic001G301600--Sobic003G371100 Sobic002G213000 Sobic002G213000 Sobic001G301600--Sobic002G213000 Sobic001G301600--Sobic001G355600 Sobic001G301600--Sobic001G301500 Sobic003G237600 Sobic003G237600 Sobic001G301600--Sobic003G237600 Sobic002G357000 Sobic002G357000 Sobic001G301600--Sobic002G357000 Sobic001G301600--Sobic001G300800 Sobic007G058200 Sobic007G058200 Sobic001G301600--Sobic007G058200 Sobic008G088000 Sobic008G088000 Sobic005G222800--Sobic008G088000 Sobic003G069000 Sobic003G069000 Sobic005G222800--Sobic003G069000 Sobic008G106200 Sobic008G106200 Sobic005G222800--Sobic008G106200 Sobic003G210801 Sobic003G210801 Sobic005G222800--Sobic003G210801 Sobic005G222800--Sobic001G301500 Sobic003G445100 Sobic003G445100 Sobic005G222800--Sobic003G445100 Sobic005G222700 Sobic005G222700 Sobic005G222800--Sobic005G222700 Sobic005G222800--Sobic003G069100 Sobic006G180432 Sobic006G180432 Sobic005G222800--Sobic006G180432 Sobic007G171600 Sobic007G171600 Sobic003G069100--Sobic007G171600 Sobic008G067200 Sobic008G067200 Sobic003G069100--Sobic008G067200 Sobic010G276400 Sobic010G276400 Sobic003G069100--Sobic010G276400 Sobic004G026300 Sobic004G026300 Sobic003G069100--Sobic004G026300 Sobic002G000500 Sobic002G000500 Sobic003G069100--Sobic002G000500 Sobic010G019700 Sobic010G019700 Sobic003G069100--Sobic010G019700 Sobic001G068400 Sobic001G068400 Sobic003G069100--Sobic001G068400 Sobic001G379700 Sobic001G379700 Sobic003G069100--Sobic001G379700 Sobic003G057900 Sobic003G057900 Sobic003G069100--Sobic003G057900 Sobic004G095000 Sobic004G095000 Sobic001G300800--Sobic004G095000 Sobic010G093500 Sobic010G093500 Sobic001G300800--Sobic010G093500 Sobic003G338801 Sobic003G338801 Sobic001G300800--Sobic003G338801 Sobic010G094301 Sobic010G094301 Sobic001G300800--Sobic010G094301 Sobic001G300800--Sobic003G069100 Sobic001G300800--Sobic001G301600 Sobic001G361700 Sobic001G361700 Sobic001G300800--Sobic001G361700 Sobic001G262301 Sobic001G262301 Sobic001G300800--Sobic001G262301 Sobic001G300800--Sobic002G213000 Sobic003G404900--Sobic002G000500 Sobic003G404900--Sobic001G361700 Sobic004G035601 Sobic004G035601 Sobic003G404900--Sobic004G035601 Sobic006G051300 Sobic006G051300 Sobic003G404900--Sobic006G051300 Sobic008G016250 Sobic008G016250 Sobic003G404900--Sobic008G016250 Sobic010G108401 Sobic010G108401 Sobic003G404900--Sobic010G108401 Sobic004G026700 Sobic004G026700 Sobic003G404900--Sobic004G026700 Sobic010G183032 Sobic010G183032 Sobic003G404900--Sobic010G183032 Sobic003G404900--Sobic007G171600 Sobic001G189100 Sobic001G189100 Sobic001G355600--Sobic001G189100 Sobic001G355600--Sobic003G237600 Sobic009G222200 Sobic009G222200 Sobic001G355600--Sobic009G222200 Sobic001G355600--Sobic003G371100 Sobic003G036100 Sobic003G036100 Sobic001G355600--Sobic003G036100 Sobic010G183100 Sobic010G183100 Sobic001G355600--Sobic010G183100 Sobic001G355600--Sobic008G106200 Sobic009G254600 Sobic009G254600 Sobic001G355600--Sobic009G254600 Sobic006G127350 Sobic006G127350 Sobic008G105850--Sobic006G127350 Sobic008G105300 Sobic008G105300 Sobic008G105850--Sobic008G105300 Sobic008G105850--Sobic001G361700 Sobic008G105850--Sobic003G404900 Sobic008G105850--Sobic010G093500 Sobic008G105850--Sobic003G069100 Sobic008G105850--Sobic007G171600 Sobic006G011100 Sobic006G011100 Sobic008G105850--Sobic006G011100 Sobic008G105850--Sobic002G000500 Sobic001G215600--Sobic003G338801 Sobic001G215600--Sobic002G357000 Sobic001G215600--Sobic001G262301 Sobic001G215600--Sobic010G094301 Sobic001G215600--Sobic001G301600 Sobic010G015800 Sobic010G015800 Sobic001G215600--Sobic010G015800 Sobic001G215600--Sobic007G058200 Sobic006G200800 Sobic006G200800 Sobic001G215600--Sobic006G200800 Sobic001G327900 Sobic001G327900 Sobic001G215600--Sobic001G327900 Sobic009G242800 Sobic009G242800 Sobic001G208100--Sobic009G242800 Sobic001G063100 Sobic001G063100 Sobic001G208100--Sobic001G063100 Sobic002G346600 Sobic002G346600 Sobic001G208100--Sobic002G346600 Sobic006G133600 Sobic006G133600 Sobic001G208100--Sobic006G133600 Sobic003G108100 Sobic003G108100 Sobic001G208100--Sobic003G108100 Sobic003G204000 Sobic003G204000 Sobic001G208100--Sobic003G204000 Sobic002G181450 Sobic002G181450 Sobic001G208100--Sobic002G181450 Sobic003G136800 Sobic003G136800 Sobic001G208100--Sobic003G136800 Sobic002G317800 Sobic002G317800 Sobic001G208100--Sobic002G317800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.