Gene annotation
Transcriptome id Sobic.008G026800.1,Sobic.008G026800.2
Synonym Sb08g002330, RPT2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
BTBN22 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
UniProt A0A1B6PAX7 , Q84YF6 , A0A1B6PBS3
Pfam PF03000
Panther DB PTHR32370 PTHR32370:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009638; phototropism GO:0004871obsolete signal transducer activity


Orthologs (automatic annotation)
TAIR AT2G30520 : Phototropic-responsive NPH3 family protein
RAP-DB (Rice) LOC_Os12g02530.1 : BTBN22 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
MaizeGDB (Corn) Zm00025a013176 , Zm00025a053790
Brachypodium KQK23018 , KQJ89470
Barley HORVU4Hr1G023260.1 , HORVU4Hr1G023260.3 , HORVU4Hr1G023260.2 , HORVU4Hr1G023260.5 , HORVU4Hr1G023260.4 , HORVU4Hr1G023260.7 , HORVU4Hr1G023260.6
Wheat TraesCS4B02G122300 , TraesCS4A02G192900 , TraesCS4D02G120400
Populus -


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cDNA sequences
Sobic.008G026800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G463200 BTBN5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
2 Sobic.006G147300 -(PubMedID : 26465154)@expressed protein -
3 Sobic.001G317400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
4 Sobic.002G036000 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
5 Sobic.008G053200 fructose-bisphosphate aldolase 2(PubMedID : 26465154)@fructose-bisphosphate aldolase 2("PubMedID : 26759170,PubMedID : 24597475")@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
6 Sobic.003G431900 -(PubMedID : 26976818)@expressed protein K07562: nonsense-mediated mRNA decay protein 3
7 Sobic.007G207800 thylakoid lumen protein, chloroplast precursor, putative, expressed -
8 Sobic.003G199800 expressed protein -
9 Sobic.004G272600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.002G403600 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@rhythmically expressed gene 2 protein, putative, expressed -
11 Sobic.003G435800 Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain(PubMedID : 26465154)@Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chlorophyllide a oxygenase, chloroplast precursor, putative, expressed K13600: chlorophyllide a oxygenase
12 Sobic.003G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
13 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
14 Sobic.003G256700 expressed protein -
15 Sobic.002G030500 Reticulon family protein(PubMedID : 26465154)@reticulon domain containing protein, putative, expressed -
16 Sobic.009G191300 photosystem II reaction center W protein, chloroplast precursor, putative, expressed K02721: photosystem II PsbW protein
17 Sobic.008G021300 Unnamed(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed -
18 Sobic.008G066100 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed -
19 Sobic.002G064000 expressed protein -
20 Sobic.004G308700 photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08911: light-harvesting complex I chlorophyll a/b binding protein 5


Gene co-expression network
sample Sobic008G026800 Sobic008G026800 Sobic001G463200 Sobic001G463200 Sobic008G026800--Sobic001G463200 Sobic006G147300 Sobic006G147300 Sobic008G026800--Sobic006G147300 Sobic001G317400 Sobic001G317400 Sobic008G026800--Sobic001G317400 Sobic002G036000 Sobic002G036000 Sobic008G026800--Sobic002G036000 Sobic008G053200 Sobic008G053200 Sobic008G026800--Sobic008G053200 Sobic003G431900 Sobic003G431900 Sobic008G026800--Sobic003G431900 Sobic007G207800 Sobic007G207800 Sobic008G026800--Sobic007G207800 Sobic003G199800 Sobic003G199800 Sobic008G026800--Sobic003G199800 Sobic004G272600 Sobic004G272600 Sobic008G026800--Sobic004G272600 Sobic001G463200--Sobic004G272600 Sobic001G463200--Sobic008G026800 Sobic004G035601 Sobic004G035601 Sobic001G463200--Sobic004G035601 Sobic002G064000 Sobic002G064000 Sobic001G463200--Sobic002G064000 Sobic001G463200--Sobic006G147300 Sobic006G051300 Sobic006G051300 Sobic001G463200--Sobic006G051300 Sobic005G111200 Sobic005G111200 Sobic001G463200--Sobic005G111200 Sobic008G015100 Sobic008G015100 Sobic001G463200--Sobic008G015100 Sobic001G463200--Sobic008G053200 Sobic006G147300--Sobic007G207800 Sobic008G066100 Sobic008G066100 Sobic006G147300--Sobic008G066100 Sobic003G359100 Sobic003G359100 Sobic006G147300--Sobic003G359100 Sobic002G030500 Sobic002G030500 Sobic006G147300--Sobic002G030500 Sobic004G035500 Sobic004G035500 Sobic006G147300--Sobic004G035500 Sobic002G098800 Sobic002G098800 Sobic006G147300--Sobic002G098800 Sobic006G147300--Sobic003G199800 Sobic006G147300--Sobic004G272600 Sobic003G435800 Sobic003G435800 Sobic006G147300--Sobic003G435800 Sobic001G317400--Sobic002G036000 Sobic001G391900 Sobic001G391900 Sobic001G317400--Sobic001G391900 Sobic003G443500 Sobic003G443500 Sobic001G317400--Sobic003G443500 Sobic001G317400--Sobic008G026800 Sobic002G403600 Sobic002G403600 Sobic001G317400--Sobic002G403600 Sobic007G034300 Sobic007G034300 Sobic001G317400--Sobic007G034300 Sobic001G158900 Sobic001G158900 Sobic001G317400--Sobic001G158900 Sobic005G118300 Sobic005G118300 Sobic001G317400--Sobic005G118300 Sobic001G317400--Sobic008G053200 Sobic002G036000--Sobic008G053200 Sobic001G102800 Sobic001G102800 Sobic002G036000--Sobic001G102800 Sobic004G308700 Sobic004G308700 Sobic002G036000--Sobic004G308700 Sobic001G519800 Sobic001G519800 Sobic002G036000--Sobic001G519800 Sobic003G431700 Sobic003G431700 Sobic002G036000--Sobic003G431700 Sobic006G101500 Sobic006G101500 Sobic002G036000--Sobic006G101500 Sobic002G036000--Sobic003G443500 Sobic004G272100 Sobic004G272100 Sobic002G036000--Sobic004G272100 Sobic002G036000--Sobic008G066100 Sobic008G053200--Sobic003G431900 Sobic008G053200--Sobic001G519800 Sobic003G234200 Sobic003G234200 Sobic008G053200--Sobic003G234200 Sobic008G053200--Sobic002G036000 Sobic004G238600 Sobic004G238600 Sobic008G053200--Sobic004G238600 Sobic004G283100 Sobic004G283100 Sobic008G053200--Sobic004G283100 Sobic008G053200--Sobic004G272100 Sobic008G053200--Sobic004G308700 Sobic005G089600 Sobic005G089600 Sobic008G053200--Sobic005G089600 Sobic003G431900--Sobic008G053200 Sobic003G431900--Sobic003G234200 Sobic004G305800 Sobic004G305800 Sobic003G431900--Sobic004G305800 Sobic003G256700 Sobic003G256700 Sobic003G431900--Sobic003G256700 Sobic003G431900--Sobic001G519800 Sobic005G165500 Sobic005G165500 Sobic003G431900--Sobic005G165500 Sobic002G324500 Sobic002G324500 Sobic003G431900--Sobic002G324500 Sobic003G431900--Sobic004G308700 Sobic003G431900--Sobic004G272100 Sobic008G134800 Sobic008G134800 Sobic007G207800--Sobic008G134800 Sobic007G223500 Sobic007G223500 Sobic007G207800--Sobic007G223500 Sobic007G207800--Sobic002G030500 Sobic007G207800--Sobic008G066100 Sobic001G425400 Sobic001G425400 Sobic007G207800--Sobic001G425400 Sobic007G207800--Sobic003G359100 Sobic007G207800--Sobic001G519800 Sobic002G316700 Sobic002G316700 Sobic007G207800--Sobic002G316700 Sobic007G071500 Sobic007G071500 Sobic007G207800--Sobic007G071500 Sobic002G040100 Sobic002G040100 Sobic003G199800--Sobic002G040100 Sobic010G276400 Sobic010G276400 Sobic003G199800--Sobic010G276400 Sobic002G000500 Sobic002G000500 Sobic003G199800--Sobic002G000500 Sobic010G183100 Sobic010G183100 Sobic003G199800--Sobic010G183100 Sobic003G199800--Sobic004G035500 Sobic008G038300 Sobic008G038300 Sobic003G199800--Sobic008G038300 Sobic010G109500 Sobic010G109500 Sobic003G199800--Sobic010G109500 Sobic007G189700 Sobic007G189700 Sobic003G199800--Sobic007G189700 Sobic009G191300 Sobic009G191300 Sobic003G199800--Sobic009G191300 Sobic001G070500 Sobic001G070500 Sobic004G272600--Sobic001G070500 Sobic010G189300 Sobic010G189300 Sobic004G272600--Sobic010G189300 Sobic003G052500 Sobic003G052500 Sobic004G272600--Sobic003G052500 Sobic002G033900 Sobic002G033900 Sobic004G272600--Sobic002G033900 Sobic006G073500 Sobic006G073500 Sobic004G272600--Sobic006G073500 Sobic004G071800 Sobic004G071800 Sobic004G272600--Sobic004G071800 Sobic004G235200 Sobic004G235200 Sobic004G272600--Sobic004G235200 Sobic004G272600--Sobic008G015100 Sobic009G229700 Sobic009G229700 Sobic004G272600--Sobic009G229700
Octagon: transcription factors


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