Gene annotation
Transcriptome id Sobic.003G009200.3,Sobic.003G009200.4,Sobic.003G009200.6,Sobic.003G009200.2,Sobic.003G009200.5
Synonym Sb03g000980
Functional annotation expressed protein
UniProt A0A1W0VVD6 , A0A1W0VVB3 , A0A1W0VVB5 , C5XJQ0
Pfam PF07995
Panther DB PTHR19328 PTHR19328:SF35
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016901; oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor GO:0005975carbohydrate metabolic process


Orthologs (automatic annotation)
TAIR AT5G62630 : hipl2 protein precursor
RAP-DB (Rice) LOC_Os03g48540.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G507200 PIR, putative, expressed K05749: cytoplasmic FMR1 interacting protein
2 Sobic.009G049200 Spc97 / Spc98 family protein, putative, expressed K16571: TUBGCP4, gamma-tubulin complex component 4
3 Sobic.003G311500 double-stranded RNA binding motif containing protein, expressed -
4 Sobic.004G034300 transducin family protein, putative, expressed -
5 Sobic.010G103500 ATMAP70 protein, putative, expressed -
6 Sobic.007G051400 transmembrane 9 superfamily member, putative, expressed -
7 Sobic.002G418100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@bZIP transcription factor domain containing protein, expressed -
8 Sobic.004G231200 amine oxidase, putative, expressed K11450: KDM1A, AOF2, [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase
9 Sobic.008G192700 ATMAP70 protein, putative, expressed -
10 Sobic.001G211500 LIG1 - Putative DNA ligase I, expressed K10747: DNA ligase 1
11 Sobic.008G169400 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed -
12 Sobic.004G064600 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
13 Sobic.002G260700 ARF GTPase-activating domain-containing protein, putative, expressed K12489: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
14 Sobic.007G209600 ENT domain containing protein, expressed -
15 Sobic.004G129500 expressed protein -
16 Sobic.001G437400 guanine nucleotide exchange family protein, putative, expressed K18442: ARFGEF, brefeldin A-inhibited guanine nucleotide-exchange protein
17 Sobic.001G361200 expressed protein -
18 Sobic.010G186500 targeting protein for Xklp2, putative, expressed -
19 Sobic.007G076200 VERNALIZATION-INSENSITIVE, putative, expressed -
20 Sobic.008G179000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic003G009200 Sobic003G009200 Sobic001G507200 Sobic001G507200 Sobic003G009200--Sobic001G507200 Sobic009G049200 Sobic009G049200 Sobic003G009200--Sobic009G049200 Sobic003G311500 Sobic003G311500 Sobic003G009200--Sobic003G311500 Sobic004G034300 Sobic004G034300 Sobic003G009200--Sobic004G034300 Sobic010G103500 Sobic010G103500 Sobic003G009200--Sobic010G103500 Sobic007G051400 Sobic007G051400 Sobic003G009200--Sobic007G051400 Sobic002G418100 Sobic002G418100 Sobic003G009200--Sobic002G418100 Sobic004G231200 Sobic004G231200 Sobic003G009200--Sobic004G231200 Sobic008G192700 Sobic008G192700 Sobic003G009200--Sobic008G192700 Sobic009G052100 Sobic009G052100 Sobic001G507200--Sobic009G052100 Sobic001G507200--Sobic009G049200 Sobic006G173200 Sobic006G173200 Sobic001G507200--Sobic006G173200 Sobic004G315700 Sobic004G315700 Sobic001G507200--Sobic004G315700 Sobic006G071628 Sobic006G071628 Sobic001G507200--Sobic006G071628 Sobic001G296800 Sobic001G296800 Sobic001G507200--Sobic001G296800 Sobic001G385400 Sobic001G385400 Sobic001G507200--Sobic001G385400 Sobic001G507200--Sobic008G192700 Sobic002G399900 Sobic002G399900 Sobic001G507200--Sobic002G399900 Sobic009G049200--Sobic009G052100 Sobic009G049200--Sobic001G507200 Sobic001G143600 Sobic001G143600 Sobic009G049200--Sobic001G143600 Sobic003G250900 Sobic003G250900 Sobic009G049200--Sobic003G250900 Sobic010G250800 Sobic010G250800 Sobic009G049200--Sobic010G250800 Sobic009G049200--Sobic004G231200 Sobic004G307900 Sobic004G307900 Sobic009G049200--Sobic004G307900 Sobic003G423600 Sobic003G423600 Sobic009G049200--Sobic003G423600 Sobic008G015200 Sobic008G015200 Sobic009G049200--Sobic008G015200 Sobic004G343200 Sobic004G343200 Sobic003G311500--Sobic004G343200 Sobic007G209600 Sobic007G209600 Sobic003G311500--Sobic007G209600 Sobic003G311500--Sobic008G015200 Sobic007G087800 Sobic007G087800 Sobic003G311500--Sobic007G087800 Sobic007G159200 Sobic007G159200 Sobic003G311500--Sobic007G159200 Sobic002G219900 Sobic002G219900 Sobic003G311500--Sobic002G219900 Sobic006G188800 Sobic006G188800 Sobic003G311500--Sobic006G188800 Sobic003G311500--Sobic003G009200 Sobic002G430900 Sobic002G430900 Sobic003G311500--Sobic002G430900 Sobic004G336300 Sobic004G336300 Sobic004G034300--Sobic004G336300 Sobic010G178600 Sobic010G178600 Sobic004G034300--Sobic010G178600 Sobic002G070600 Sobic002G070600 Sobic004G034300--Sobic002G070600 Sobic008G072200 Sobic008G072200 Sobic004G034300--Sobic008G072200 Sobic005G059500 Sobic005G059500 Sobic004G034300--Sobic005G059500 Sobic009G118900 Sobic009G118900 Sobic004G034300--Sobic009G118900 Sobic003G334700 Sobic003G334700 Sobic004G034300--Sobic003G334700 Sobic004G212100 Sobic004G212100 Sobic004G034300--Sobic004G212100 Sobic001G012900 Sobic001G012900 Sobic004G034300--Sobic001G012900 Sobic002G260700 Sobic002G260700 Sobic010G103500--Sobic002G260700 Sobic004G306100 Sobic004G306100 Sobic010G103500--Sobic004G306100 Sobic003G411700 Sobic003G411700 Sobic010G103500--Sobic003G411700 Sobic004G129500 Sobic004G129500 Sobic010G103500--Sobic004G129500 Sobic007G036800 Sobic007G036800 Sobic010G103500--Sobic007G036800 Sobic010G103500--Sobic001G296800 Sobic010G103500--Sobic004G315700 Sobic002G271400 Sobic002G271400 Sobic010G103500--Sobic002G271400 Sobic010G052400 Sobic010G052400 Sobic010G103500--Sobic010G052400 Sobic002G142700 Sobic002G142700 Sobic007G051400--Sobic002G142700 Sobic004G277400 Sobic004G277400 Sobic007G051400--Sobic004G277400 Sobic007G051400--Sobic004G343200 Sobic007G051400--Sobic004G129500 Sobic001G191900 Sobic001G191900 Sobic007G051400--Sobic001G191900 Sobic002G426100 Sobic002G426100 Sobic007G051400--Sobic002G426100 Sobic010G172400 Sobic010G172400 Sobic007G051400--Sobic010G172400 Sobic004G256300 Sobic004G256300 Sobic007G051400--Sobic004G256300 Sobic007G051400--Sobic001G507200 Sobic002G418100--Sobic002G260700 Sobic002G418100--Sobic010G103500 Sobic004G000400 Sobic004G000400 Sobic002G418100--Sobic004G000400 Sobic002G418100--Sobic003G009200 Sobic002G418100--Sobic007G036800 Sobic010G186500 Sobic010G186500 Sobic002G418100--Sobic010G186500 Sobic002G268700 Sobic002G268700 Sobic002G418100--Sobic002G268700 Sobic001G348000 Sobic001G348000 Sobic002G418100--Sobic001G348000 Sobic003G397100 Sobic003G397100 Sobic002G418100--Sobic003G397100 Sobic004G231200--Sobic002G268700 Sobic004G231200--Sobic009G049200 Sobic004G064600 Sobic004G064600 Sobic004G231200--Sobic004G064600 Sobic004G231200--Sobic002G426100 Sobic004G231200--Sobic004G034300 Sobic001G140700 Sobic001G140700 Sobic004G231200--Sobic001G140700 Sobic006G265600 Sobic006G265600 Sobic004G231200--Sobic006G265600 Sobic001G522000 Sobic001G522000 Sobic004G231200--Sobic001G522000 Sobic007G173000 Sobic007G173000 Sobic004G231200--Sobic007G173000 Sobic001G285200 Sobic001G285200 Sobic008G192700--Sobic001G285200 Sobic008G192700--Sobic008G015200 Sobic010G049300 Sobic010G049300 Sobic008G192700--Sobic010G049300 Sobic002G074000 Sobic002G074000 Sobic008G192700--Sobic002G074000 Sobic008G148500 Sobic008G148500 Sobic008G192700--Sobic008G148500 Sobic006G272500 Sobic006G272500 Sobic008G192700--Sobic006G272500 Sobic002G419200 Sobic002G419200 Sobic008G192700--Sobic002G419200 Sobic008G192700--Sobic001G507200 Sobic001G026800 Sobic001G026800 Sobic008G192700--Sobic001G026800
Octagon: transcription factors


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