Gene annotation
Transcriptome id Sobic.003G195900.1
Synonym SCD1, Sb03g025870
Functional annotation SCD1, putative, expressed
UniProt A0A1B6Q4F6
Pfam PF03455 PF03456 PF00400 PF02141
Panther DB PTHR22844 PTHR22844:SF202
NCBI CDD KOG0266; WD40 repeat-containing protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G49040 : stomatal cytokinesis defective / SCD1 protein (SCD1)
RAP-DB (Rice) LOC_Os01g39380.1 : SCD1, putative, expressed
MaizeGDB (Corn) Zm00025a028461
Brachypodium KQK08398 , PNT72232
Barley HORVU3Hr1G050010.19 , HORVU3Hr1G050010.18 , HORVU3Hr1G050010.17 , HORVU3Hr1G050010.16 , HORVU3Hr1G050010.15 , HORVU3Hr1G050010.14 , HORVU3Hr1G050010.13 , HORVU3Hr1G050010.12 , HORVU3Hr1G050010.11 , HORVU3Hr1G050010.10 , HORVU3Hr1G050010.7 , HORVU3Hr1G050010.6 , HORVU3Hr1G050010.5 , HORVU3Hr1G050010.4 , HORVU3Hr1G050010.3 , HORVU3Hr1G050010.2 , HORVU3Hr1G050010.1 , HORVU3Hr1G050010.9 , HORVU3Hr1G050010.8 , HORVU3Hr1G050010.20
Wheat TraesCS3A02G204600 , TraesCS3A02G204600 , TraesCS3A02G204600 , TraesCS3A02G204600 , TraesCS3A02G204600 , TraesCS3A02G204600 , TraesCS3D02G210700 , TraesCS3D02G210700 , TraesCS3D02G210700 , TraesCS3D02G210700 , TraesCS3B02G236700 , TraesCS3B02G236700 , TraesCS3B02G236700 , TraesCS3B02G236700 , TraesCS3B02G236700 , TraesCS3B02G236700 , TraesCS3B02G236700 , TraesCS3B02G236700 , TraesCS3D02G210700 , TraesCS3D02G210700 , TraesCS3D02G210700 , TraesCS3D02G210700 , TraesCS3D02G210700 , TraesCS3D02G210700 , TraesCS3D02G210700 , TraesCS3D02G210700 , TraesCS3D02G210700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G340900 ATMIN7, putative, expressed K13462: guanine nucleotide-exchange factor
2 Sobic.001G097900 expressed protein -
3 Sobic.003G143800 nodal modulator 1 precursor, putative, expressed -
4 Sobic.001G437400 guanine nucleotide exchange family protein, putative, expressed K18442: ARFGEF, brefeldin A-inhibited guanine nucleotide-exchange protein
5 Sobic.006G021700 expressed protein K17600: vacuolar protein sorting-associated protein 54
6 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
7 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35
8 Sobic.001G308400 expressed protein -
9 Sobic.004G265500 SET domain protein SDG117, putative, expressed -
10 Sobic.009G118900 expressed protein -
11 Sobic.002G117600 myosin, putative, expressed K10357: myosin V
12 Sobic.002G227500 protein transport protein, putative, expressed K14006: protein transport protein SEC23
13 Sobic.004G223300 ARF GTPase-activating domain-containing protein, putative, expressed K12489: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
14 Sobic.008G124800 expressed protein -
15 Sobic.001G118000 phosphatidylinositol 4-kinase PI4K, putative, expressed K00888: phosphatidylinositol 4-kinase A
16 Sobic.010G223400 expressed protein -
17 Sobic.009G040325 - -
18 Sobic.008G092800 expressed protein -
19 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
20 Sobic.002G400151 - -


Gene co-expression network
sample Sobic003G195900 Sobic003G195900 Sobic002G340900 Sobic002G340900 Sobic003G195900--Sobic002G340900 Sobic001G097900 Sobic001G097900 Sobic003G195900--Sobic001G097900 Sobic003G143800 Sobic003G143800 Sobic003G195900--Sobic003G143800 Sobic001G437400 Sobic001G437400 Sobic003G195900--Sobic001G437400 Sobic006G021700 Sobic006G021700 Sobic003G195900--Sobic006G021700 Sobic006G106300 Sobic006G106300 Sobic003G195900--Sobic006G106300 Sobic003G021600 Sobic003G021600 Sobic003G195900--Sobic003G021600 Sobic001G308400 Sobic001G308400 Sobic003G195900--Sobic001G308400 Sobic004G265500 Sobic004G265500 Sobic003G195900--Sobic004G265500 Sobic008G124800 Sobic008G124800 Sobic002G340900--Sobic008G124800 Sobic002G340900--Sobic001G437400 Sobic002G340900--Sobic006G021700 Sobic004G053500 Sobic004G053500 Sobic002G340900--Sobic004G053500 Sobic001G117800 Sobic001G117800 Sobic002G340900--Sobic001G117800 Sobic009G118900 Sobic009G118900 Sobic002G340900--Sobic009G118900 Sobic003G029600 Sobic003G029600 Sobic002G340900--Sobic003G029600 Sobic004G223300 Sobic004G223300 Sobic002G340900--Sobic004G223300 Sobic001G474400 Sobic001G474400 Sobic002G340900--Sobic001G474400 Sobic010G192600 Sobic010G192600 Sobic001G097900--Sobic010G192600 Sobic001G097900--Sobic001G474400 Sobic001G445500 Sobic001G445500 Sobic001G097900--Sobic001G445500 Sobic001G097900--Sobic006G106300 Sobic005G110499 Sobic005G110499 Sobic001G097900--Sobic005G110499 Sobic002G227500 Sobic002G227500 Sobic001G097900--Sobic002G227500 Sobic001G097900--Sobic001G308400 Sobic009G040250 Sobic009G040250 Sobic001G097900--Sobic009G040250 Sobic005G114500 Sobic005G114500 Sobic001G097900--Sobic005G114500 Sobic003G143800--Sobic008G124800 Sobic003G143800--Sobic006G021700 Sobic001G015400 Sobic001G015400 Sobic003G143800--Sobic001G015400 Sobic007G155500 Sobic007G155500 Sobic003G143800--Sobic007G155500 Sobic008G092800 Sobic008G092800 Sobic003G143800--Sobic008G092800 Sobic003G143800--Sobic002G340900 Sobic004G141800 Sobic004G141800 Sobic003G143800--Sobic004G141800 Sobic003G143800--Sobic005G114500 Sobic003G405500 Sobic003G405500 Sobic003G143800--Sobic003G405500 Sobic001G437400--Sobic002G340900 Sobic003G314700 Sobic003G314700 Sobic001G437400--Sobic003G314700 Sobic003G250900 Sobic003G250900 Sobic001G437400--Sobic003G250900 Sobic001G437400--Sobic009G118900 Sobic001G437400--Sobic003G029600 Sobic001G437400--Sobic001G117800 Sobic003G334700 Sobic003G334700 Sobic001G437400--Sobic003G334700 Sobic001G437400--Sobic008G124800 Sobic007G019300 Sobic007G019300 Sobic001G437400--Sobic007G019300 Sobic006G021700--Sobic008G124800 Sobic006G077300 Sobic006G077300 Sobic006G021700--Sobic006G077300 Sobic006G021700--Sobic002G340900 Sobic005G059500 Sobic005G059500 Sobic006G021700--Sobic005G059500 Sobic003G209200 Sobic003G209200 Sobic006G021700--Sobic003G209200 Sobic003G346400 Sobic003G346400 Sobic006G021700--Sobic003G346400 Sobic010G000800 Sobic010G000800 Sobic006G021700--Sobic010G000800 Sobic007G005500 Sobic007G005500 Sobic006G021700--Sobic007G005500 Sobic006G021700--Sobic005G110499 Sobic003G409900 Sobic003G409900 Sobic006G106300--Sobic003G409900 Sobic006G106300--Sobic003G021600 Sobic002G398700 Sobic002G398700 Sobic006G106300--Sobic002G398700 Sobic006G106300--Sobic001G097900 Sobic006G106300--Sobic001G015400 Sobic009G254100 Sobic009G254100 Sobic006G106300--Sobic009G254100 Sobic002G301100 Sobic002G301100 Sobic006G106300--Sobic002G301100 Sobic006G106300--Sobic001G474400 Sobic002G364900 Sobic002G364900 Sobic006G106300--Sobic002G364900 Sobic009G194000 Sobic009G194000 Sobic003G021600--Sobic009G194000 Sobic003G181700 Sobic003G181700 Sobic003G021600--Sobic003G181700 Sobic003G190200 Sobic003G190200 Sobic003G021600--Sobic003G190200 Sobic003G021600--Sobic002G227500 Sobic009G040325 Sobic009G040325 Sobic003G021600--Sobic009G040325 Sobic003G021600--Sobic009G040250 Sobic003G394500 Sobic003G394500 Sobic003G021600--Sobic003G394500 Sobic003G021600--Sobic001G308400 Sobic001G043200 Sobic001G043200 Sobic003G021600--Sobic001G043200 Sobic001G308400--Sobic004G265500 Sobic001G308400--Sobic002G227500 SobicK028600 SobicK028600 Sobic001G308400--SobicK028600 Sobic003G043000 Sobic003G043000 Sobic001G308400--Sobic003G043000 Sobic010G169900 Sobic010G169900 Sobic001G308400--Sobic010G169900 Sobic006G128100 Sobic006G128100 Sobic001G308400--Sobic006G128100 Sobic004G357100 Sobic004G357100 Sobic001G308400--Sobic004G357100 Sobic001G156900 Sobic001G156900 Sobic001G308400--Sobic001G156900 Sobic003G394200 Sobic003G394200 Sobic001G308400--Sobic003G394200 Sobic004G265500--Sobic003G043000 Sobic003G163200 Sobic003G163200 Sobic004G265500--Sobic003G163200 Sobic004G265500--Sobic001G308400 Sobic004G265500--Sobic004G357100 Sobic004G265500--Sobic010G000800 Sobic002G042600 Sobic002G042600 Sobic004G265500--Sobic002G042600 Sobic004G265500--Sobic004G053500 Sobic004G265500--SobicK028600 Sobic004G265500--Sobic002G227500
Octagon: transcription factors


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