Gene annotation
Transcriptome id Sobic.003G428100.1
Synonym Sb03g046020
Functional annotation FYVE zinc finger domain containing protein, expressed
UniProt A0A1B6Q895
Pfam PF01363 PF13713 PF16627 PF08381 PF00415
Panther DB PTHR22870 PTHR22870:SF212
NCBI CDD KOG1427; Uncharacterized conserved protein, contains RCC1 domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G19420 : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
RAP-DB (Rice) LOC_Os01g72320.1 : FYVE zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a039118 , Zm00025a025958
Brachypodium PNT73606 , PNT73605 , KQK11558 , KQK06522 , KQK11557
Barley HORVU3Hr1G107820.5 , HORVU3Hr1G107820.4 , HORVU3Hr1G107820.7 , HORVU3Hr1G107820.6 , HORVU3Hr1G107820.1 , HORVU3Hr1G107820.3 , HORVU3Hr1G107820.2 , HORVU0Hr1G028990.2 , HORVU0Hr1G028990.3 , HORVU0Hr1G028990.1 , HORVU1Hr1G056870.1 , HORVU1Hr1G056870.5 , HORVU1Hr1G056870.4 , HORVU1Hr1G056870.6 , HORVU1Hr1G056870.3 , HORVU1Hr1G056870.2
Wheat TraesCS1B02G252700 , TraesCS1B02G252700 , TraesCS1B02G252700 , TraesCS1B02G252700 , TraesCS1B02G252700 , TraesCS1D02G240700 , TraesCS1D02G240700 , TraesCS1D02G240700 , TraesCS1D02G240700 , TraesCS1D02G240700 , TraesCS1A02G240600 , TraesCS1A02G240600 , TraesCS1A02G240600 , TraesCS3D02G489600 , TraesCS3D02G489600 , TraesCS3B02G559500 , TraesCS3B02G543500 , TraesCS3B02G543500
Populus -


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cDNA sequences
Sobic.003G428100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G457900 expressed protein -
2 Sobic.009G251500 chromosome segregation protein sudA, putative, expressed K06669: SMC3, structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
3 Sobic.001G025000 FACT complex subunit SPT16, putative, expressed -
4 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
5 Sobic.001G196500 plus-3 domain containing protein, putative, expressed -
6 Sobic.008G132600 expressed protein -
7 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
8 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
9 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
10 Sobic.002G154000 EDM2, putative, expressed -
11 Sobic.003G196300 DNA binding protein, putative, expressed -
12 Sobic.003G404500 dynamin family protein, putative, expressed K17065: dynamin 1-like protein
13 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
14 Sobic.008G083200 transcription factor, putative, expressed K09060: plant G-box-binding factor
15 Sobic.007G063000 expressed protein -
16 Sobic.009G166100 PWWP domain containing protein, expressed -
17 Sobic.001G363500 DIRP family protein, putative, expressed -
18 Sobic.001G111600 expressed protein -
19 Sobic.009G256300 DNA binding protein, putative, expressed -
20 Sobic.001G313700 expressed protein -


Gene co-expression network
sample Sobic003G428100 Sobic003G428100 Sobic001G457900 Sobic001G457900 Sobic003G428100--Sobic001G457900 Sobic009G251500 Sobic009G251500 Sobic003G428100--Sobic009G251500 Sobic001G025000 Sobic001G025000 Sobic003G428100--Sobic001G025000 Sobic003G360400 Sobic003G360400 Sobic003G428100--Sobic003G360400 Sobic001G196500 Sobic001G196500 Sobic003G428100--Sobic001G196500 Sobic008G132600 Sobic008G132600 Sobic003G428100--Sobic008G132600 Sobic009G044800 Sobic009G044800 Sobic003G428100--Sobic009G044800 Sobic003G389200 Sobic003G389200 Sobic003G428100--Sobic003G389200 Sobic002G045600 Sobic002G045600 Sobic003G428100--Sobic002G045600 Sobic002G133300 Sobic002G133300 Sobic001G457900--Sobic002G133300 Sobic003G196300 Sobic003G196300 Sobic001G457900--Sobic003G196300 Sobic001G117200 Sobic001G117200 Sobic001G457900--Sobic001G117200 Sobic008G092600 Sobic008G092600 Sobic001G457900--Sobic008G092600 Sobic001G273700 Sobic001G273700 Sobic001G457900--Sobic001G273700 Sobic003G072200 Sobic003G072200 Sobic001G457900--Sobic003G072200 Sobic001G457900--Sobic003G428100 Sobic001G457900--Sobic001G196500 Sobic003G229500 Sobic003G229500 Sobic001G457900--Sobic003G229500 Sobic004G242400 Sobic004G242400 Sobic009G251500--Sobic004G242400 Sobic009G251500--Sobic003G389200 Sobic009G256300 Sobic009G256300 Sobic009G251500--Sobic009G256300 Sobic009G251500--Sobic003G360400 Sobic001G230000 Sobic001G230000 Sobic009G251500--Sobic001G230000 Sobic010G010700 Sobic010G010700 Sobic009G251500--Sobic010G010700 Sobic004G276400 Sobic004G276400 Sobic009G251500--Sobic004G276400 Sobic009G251500--Sobic002G133300 Sobic009G251500--Sobic001G457900 Sobic001G025000--Sobic003G360400 Sobic001G025000--Sobic009G044800 Sobic001G025000--Sobic003G389200 Sobic003G408600 Sobic003G408600 Sobic001G025000--Sobic003G408600 Sobic001G354600 Sobic001G354600 Sobic001G025000--Sobic001G354600 Sobic010G112100 Sobic010G112100 Sobic001G025000--Sobic010G112100 Sobic001G025000--Sobic002G045600 Sobic007G105100 Sobic007G105100 Sobic001G025000--Sobic007G105100 Sobic001G063700 Sobic001G063700 Sobic001G025000--Sobic001G063700 Sobic003G360400--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic003G360400--Sobic002G154000 Sobic003G360400--Sobic001G354600 Sobic001G433800 Sobic001G433800 Sobic003G360400--Sobic001G433800 Sobic003G360400--Sobic003G389200 Sobic003G360400--Sobic009G044800 Sobic005G112300 Sobic005G112300 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic003G360400--Sobic009G256300 Sobic001G196500--Sobic003G229500 Sobic002G299700 Sobic002G299700 Sobic001G196500--Sobic002G299700 Sobic010G275500 Sobic010G275500 Sobic001G196500--Sobic010G275500 Sobic001G196500--Sobic008G132600 Sobic003G101400 Sobic003G101400 Sobic001G196500--Sobic003G101400 Sobic001G540400 Sobic001G540400 Sobic001G196500--Sobic001G540400 Sobic001G196500--Sobic003G408600 Sobic002G397500 Sobic002G397500 Sobic001G196500--Sobic002G397500 Sobic001G196500--Sobic001G457900 Sobic008G132600--Sobic003G101400 Sobic003G422500 Sobic003G422500 Sobic008G132600--Sobic003G422500 Sobic002G411600 Sobic002G411600 Sobic008G132600--Sobic002G411600 Sobic008G132600--Sobic003G229500 Sobic009G191000 Sobic009G191000 Sobic008G132600--Sobic009G191000 Sobic009G027300 Sobic009G027300 Sobic008G132600--Sobic009G027300 Sobic007G062800 Sobic007G062800 Sobic008G132600--Sobic007G062800 Sobic002G008900 Sobic002G008900 Sobic008G132600--Sobic002G008900 Sobic010G247800 Sobic010G247800 Sobic008G132600--Sobic010G247800 Sobic009G044800--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic009G044800--Sobic002G045600 Sobic010G116600 Sobic010G116600 Sobic009G044800--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic009G044800--Sobic007G218000 Sobic009G044800--Sobic001G025000 Sobic009G044800--Sobic001G433800 Sobic007G183900 Sobic007G183900 Sobic009G044800--Sobic007G183900 Sobic003G389200--Sobic009G256300 Sobic010G206900 Sobic010G206900 Sobic003G389200--Sobic010G206900 Sobic003G389200--Sobic003G360400 Sobic003G389200--Sobic010G112100 Sobic003G389200--Sobic010G010700 Sobic001G365900 Sobic001G365900 Sobic003G389200--Sobic001G365900 Sobic003G389200--Sobic001G540400 Sobic003G389200--Sobic007G105100 Sobic003G389200--Sobic001G230000 Sobic002G045600--Sobic003G408600 Sobic002G045600--Sobic009G027300 Sobic002G045600--Sobic009G044800 Sobic007G163100 Sobic007G163100 Sobic002G045600--Sobic007G163100 Sobic002G045600--Sobic003G360400 Sobic001G313700 Sobic001G313700 Sobic002G045600--Sobic001G313700 Sobic004G200200 Sobic004G200200 Sobic002G045600--Sobic004G200200 Sobic001G207000 Sobic001G207000 Sobic002G045600--Sobic001G207000 Sobic002G045600--Sobic003G422500
Octagon: transcription factors


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