Gene annotation
Transcriptome id Sobic.003G344800.2,Sobic.003G344800.1
Synonym Sb03g038850
Functional annotation phosphatidate cytidylyltransferase, putative, expressed
UniProt A0A1W0W076 , A0A1W0W097
Pfam PF01148
Panther DB PTHR32523 PTHR32523:SF7
NCBI CDD KOG4453; Predicted ER membrane protein
KEGG Orthology K15892; farnesol kinase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G58560 : Phosphatidate cytidylyltransferase family protein
RAP-DB (Rice) LOC_Os01g61560.1 : phosphatidate cytidylyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a039726
Brachypodium KQK10421
Barley -
Wheat TraesCS3B02G383500 , TraesCS3D02G345000
Populus -


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cDNA sequences
Sobic.003G344800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G303200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@flavin-containing monooxygenase family protein, putative, expressed -
2 Sobic.003G166200 expressed protein -
3 Sobic.006G221000 starch synthase 3(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@soluble starch synthase 3, chloroplast precursor, putative, expressed -
4 Sobic.001G333800 MYB family transcription factor, putative, expressed -
5 Sobic.001G207800 integral membrane protein, putative, expressed -
6 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
7 Sobic.010G275700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
8 Sobic.005G062700 nifU, putative, expressed -
9 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
10 Sobic.003G186900 - K12812: DDX39B, UAP56, ATP-dependent RNA helicase UAP56/SUB2
11 Sobic.001G283100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@lrgB-like family protein, expressed -
12 Sobic.009G073900 thioredoxin, putative, expressed -
13 Sobic.004G317700 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
14 Sobic.006G259600 methylthioribose kinase, putative, expressed K00899: 5-methylthioribose kinase
15 Sobic.008G130000 PPR repeat domain containing protein, putative, expressed -
16 Sobic.006G102000 PAP fibrillin family domain containing protein, expressed -
17 Sobic.007G108900 APE1, putative, expressed -
18 Sobic.009G093100 OsAGSW1(Ortholog in rice:Li and Li 2015)(PubMedID : 31659923)@ ELMO/CED-12 family protein, putative, expressed -
19 Sobic.004G189800 ABC1 family domain containing protein, putative, expressed -
20 Sobic.007G123500 sulfate transporter, putative, expressed K17470: sulfate transporter 1, high-affinity


Gene co-expression network
sample Sobic003G344800 Sobic003G344800 Sobic001G303200 Sobic001G303200 Sobic003G344800--Sobic001G303200 Sobic003G166200 Sobic003G166200 Sobic003G344800--Sobic003G166200 Sobic006G221000 Sobic006G221000 Sobic003G344800--Sobic006G221000 Sobic001G333800 Sobic001G333800 Sobic003G344800--Sobic001G333800 Sobic001G207800 Sobic001G207800 Sobic003G344800--Sobic001G207800 Sobic006G090100 Sobic006G090100 Sobic003G344800--Sobic006G090100 Sobic010G275700 Sobic010G275700 Sobic003G344800--Sobic010G275700 Sobic005G062700 Sobic005G062700 Sobic003G344800--Sobic005G062700 Sobic002G382700 Sobic002G382700 Sobic003G344800--Sobic002G382700 Sobic001G283100 Sobic001G283100 Sobic001G303200--Sobic001G283100 Sobic001G303200--Sobic002G382700 Sobic001G303200--Sobic001G333800 Sobic001G303200--Sobic001G207800 Sobic006G102000 Sobic006G102000 Sobic001G303200--Sobic006G102000 Sobic007G108900 Sobic007G108900 Sobic001G303200--Sobic007G108900 Sobic001G303200--Sobic006G221000 Sobic001G303200--Sobic006G090100 Sobic003G094100 Sobic003G094100 Sobic001G303200--Sobic003G094100 Sobic006G259600 Sobic006G259600 Sobic003G166200--Sobic006G259600 Sobic003G166200--Sobic001G333800 Sobic003G166200--Sobic001G207800 Sobic003G166200--Sobic006G090100 Sobic001G258200 Sobic001G258200 Sobic003G166200--Sobic001G258200 Sobic009G093100 Sobic009G093100 Sobic003G166200--Sobic009G093100 Sobic003G186900 Sobic003G186900 Sobic003G166200--Sobic003G186900 Sobic003G166200--Sobic006G221000 Sobic003G166200--Sobic001G303200 Sobic006G221000--Sobic007G108900 Sobic006G221000--Sobic001G283100 Sobic006G221000--Sobic001G207800 Sobic006G221000--Sobic006G090100 Sobic001G015200 Sobic001G015200 Sobic006G221000--Sobic001G015200 Sobic002G047400 Sobic002G047400 Sobic006G221000--Sobic002G047400 Sobic006G221000--Sobic001G303200 Sobic004G035900 Sobic004G035900 Sobic006G221000--Sobic004G035900 Sobic003G003450 Sobic003G003450 Sobic006G221000--Sobic003G003450 Sobic001G359300 Sobic001G359300 Sobic001G333800--Sobic001G359300 Sobic005G106600 Sobic005G106600 Sobic001G333800--Sobic005G106600 Sobic001G333800--Sobic009G093100 Sobic001G333800--Sobic006G090100 Sobic001G333800--Sobic001G303200 Sobic003G220100 Sobic003G220100 Sobic001G333800--Sobic003G220100 Sobic009G038900 Sobic009G038900 Sobic001G333800--Sobic009G038900 Sobic009G073900 Sobic009G073900 Sobic001G333800--Sobic009G073900 Sobic001G077300 Sobic001G077300 Sobic001G333800--Sobic001G077300 Sobic001G207800--Sobic006G090100 Sobic001G207800--Sobic001G283100 Sobic001G207800--Sobic002G382700 Sobic001G509200 Sobic001G509200 Sobic001G207800--Sobic001G509200 Sobic001G207800--Sobic001G077300 Sobic001G207800--Sobic007G108900 Sobic001G207800--Sobic009G073900 Sobic003G341300 Sobic003G341300 Sobic001G207800--Sobic003G341300 Sobic007G157300 Sobic007G157300 Sobic001G207800--Sobic007G157300 Sobic006G090100--Sobic001G207800 Sobic006G090100--Sobic001G283100 Sobic006G090100--Sobic001G077300 Sobic006G090100--Sobic001G509200 Sobic006G090100--Sobic009G073900 Sobic006G090100--Sobic002G382700 Sobic006G090100--Sobic003G341300 Sobic001G046000 Sobic001G046000 Sobic006G090100--Sobic001G046000 Sobic002G081400 Sobic002G081400 Sobic006G090100--Sobic002G081400 Sobic003G021100 Sobic003G021100 Sobic010G275700--Sobic003G021100 Sobic005G101200 Sobic005G101200 Sobic010G275700--Sobic005G101200 Sobic004G281800 Sobic004G281800 Sobic010G275700--Sobic004G281800 Sobic001G352400 Sobic001G352400 Sobic010G275700--Sobic001G352400 Sobic004G189800 Sobic004G189800 Sobic010G275700--Sobic004G189800 Sobic010G275700--Sobic002G382700 Sobic010G275700--Sobic001G333800 Sobic002G119100 Sobic002G119100 Sobic010G275700--Sobic002G119100 Sobic010G275700--Sobic009G038900 Sobic009G225600 Sobic009G225600 Sobic005G062700--Sobic009G225600 Sobic005G062700--Sobic001G015200 Sobic005G062700--Sobic002G047400 Sobic005G062700--Sobic001G303200 Sobic005G062700--Sobic006G221000 Sobic005G062700--Sobic001G509200 Sobic005G172400 Sobic005G172400 Sobic005G062700--Sobic005G172400 Sobic005G062700--Sobic007G108900 Sobic004G305900 Sobic004G305900 Sobic005G062700--Sobic004G305900 Sobic002G382700--Sobic001G207800 Sobic002G382700--Sobic001G258200 Sobic002G382700--Sobic006G090100 Sobic002G382700--Sobic003G341300 Sobic002G382700--Sobic001G283100 Sobic007G058100 Sobic007G058100 Sobic002G382700--Sobic007G058100 Sobic002G382700--Sobic001G077300 Sobic002G162400 Sobic002G162400 Sobic002G382700--Sobic002G162400 Sobic007G227100 Sobic007G227100 Sobic002G382700--Sobic007G227100
Octagon: transcription factors


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