Gene annotation
Transcriptome id Sobic.010G188600.2,Sobic.010G188600.3,Sobic.010G188600.1
Synonym Sb10g023880, AGD12, ZAC
Functional annotation stromal membrane-associated protein, putative, expressed
UniProt A0A1W0VTS8 , C5Z5R3 , A0A194YL68
Pfam PF01412 PF00168 PF00168 PF01412
Panther DB PTHR23180 PTHR23180:SF245
NCBI CDD KOG1030; Predicted Ca2+-dependent phospholipid-binding protein
KEGG Orthology K12486; stromal membrane-associated protein
Gene Ontology GO:0005096; GTPase activator activity GO:0005515protein binding GO:0005515protein binding GO:0005096GTPase activator activity


Orthologs (automatic annotation)
TAIR AT4G21160 : Calcium-dependent ARF-type GTPase activating protein family
RAP-DB (Rice) LOC_Os06g40704.3 : stromal membrane-associated protein, putative, expressed
MaizeGDB (Corn) Zm00025a040189 , Zm00025a042164 , Zm00025a014596 , Zm00025a019590 , Zm00025a026193
Brachypodium -
Barley HORVU6Hr1G032940.12 , HORVU6Hr1G032940.10 , HORVU6Hr1G032940.11 , HORVU6Hr1G032940.1 , HORVU6Hr1G032940.2 , HORVU6Hr1G032940.3 , HORVU6Hr1G032940.5 , HORVU6Hr1G032940.6 , HORVU6Hr1G032940.7 , HORVU6Hr1G032940.8 , HORVU6Hr1G032940.9
Wheat TraesCS6B02G190600 , TraesCS6B02G190600 , TraesCS6D02G152000 , TraesCS6D02G152000 , TraesCS6A02G160700 , TraesCS6A02G160700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G063100 Mitochondrial substrate carrier family protein(PubMedID : 26465154)@mitochondrial carrier protein, putative, expressed -
2 Sobic.007G029700 BTBN17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
3 Sobic.002G193800 transporter family protein, putative, expressed -
4 Sobic.004G193700 ASC1, putative, expressed K04710: CERS1_2_3_4, ceramide synthetase
5 Sobic.002G091600 methyltransferase, putative, expressed -
6 Sobic.006G092000 expressed protein K18172: COX assembly mitochondrial protein 2
7 Sobic.005G149400 maf, putative, expressed K06287: septum formation protein
8 Sobic.008G115900 mitochondrial carrier protein, putative, expressed -
9 Sobic.001G168250 - -
10 Sobic.004G274100 expressed protein -
11 Sobic.004G016400 CDP-alcohol phosphatidyltransferase, putative, expressed K00993: ethanolaminephosphotransferase
12 Sobic.009G093900 rhodanese-like domain containing protein, putative, expressed -
13 Sobic.002G218500 lecithine cholesterol acyltransferase, putative, expressed K00679: phospholipid:diacylglycerol acyltransferase
14 Sobic.004G144600 - -
15 Sobic.010G171600 STE_MEKK_ste11_MAP3K.12 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04733: interleukin-1 receptor-associated kinase 4
16 Sobic.010G023700 Transketolase(PubMedID : 26186930)@transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
17 Sobic.002G148100 CRAL/TRIO domain containing protein, expressed -
18 Sobic.009G113800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os5bglu20 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
19 Sobic.002G309900 cupin 2, conserved barrel domain protein, putative, expressed K14977: ylbA, (S)-ureidoglycine aminohydrolase
20 Sobic.010G153900 Spermidine synthase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@"OsSPMS1(Ortholog in rice:Tao et al., 2018)"(PubMedID : 31659935)@spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase


Gene co-expression network
sample Sobic010G188600 Sobic010G188600 Sobic009G063100 Sobic009G063100 Sobic010G188600--Sobic009G063100 Sobic007G029700 Sobic007G029700 Sobic010G188600--Sobic007G029700 Sobic002G193800 Sobic002G193800 Sobic010G188600--Sobic002G193800 Sobic004G193700 Sobic004G193700 Sobic010G188600--Sobic004G193700 Sobic002G091600 Sobic002G091600 Sobic010G188600--Sobic002G091600 Sobic006G092000 Sobic006G092000 Sobic010G188600--Sobic006G092000 Sobic005G149400 Sobic005G149400 Sobic010G188600--Sobic005G149400 Sobic008G115900 Sobic008G115900 Sobic010G188600--Sobic008G115900 Sobic001G168250 Sobic001G168250 Sobic010G188600--Sobic001G168250 Sobic010G023700 Sobic010G023700 Sobic009G063100--Sobic010G023700 Sobic007G140800 Sobic007G140800 Sobic009G063100--Sobic007G140800 Sobic001G129000 Sobic001G129000 Sobic009G063100--Sobic001G129000 Sobic009G063100--Sobic010G188600 Sobic004G274100 Sobic004G274100 Sobic009G063100--Sobic004G274100 Sobic006G207800 Sobic006G207800 Sobic009G063100--Sobic006G207800 Sobic009G063100--Sobic007G029700 Sobic001G102800 Sobic001G102800 Sobic009G063100--Sobic001G102800 Sobic009G237100 Sobic009G237100 Sobic009G063100--Sobic009G237100 Sobic008G001900 Sobic008G001900 Sobic007G029700--Sobic008G001900 Sobic001G064000 Sobic001G064000 Sobic007G029700--Sobic001G064000 Sobic006G128300 Sobic006G128300 Sobic007G029700--Sobic006G128300 Sobic001G043800 Sobic001G043800 Sobic007G029700--Sobic001G043800 Sobic006G038500 Sobic006G038500 Sobic007G029700--Sobic006G038500 Sobic002G218500 Sobic002G218500 Sobic007G029700--Sobic002G218500 Sobic009G129100 Sobic009G129100 Sobic007G029700--Sobic009G129100 Sobic004G016400 Sobic004G016400 Sobic007G029700--Sobic004G016400 Sobic007G029700--Sobic009G063100 Sobic009G113800 Sobic009G113800 Sobic002G193800--Sobic009G113800 Sobic002G193800--Sobic006G207800 Sobic004G054400 Sobic004G054400 Sobic002G193800--Sobic004G054400 Sobic002G193800--Sobic004G274100 Sobic004G331700 Sobic004G331700 Sobic002G193800--Sobic004G331700 Sobic001G333500 Sobic001G333500 Sobic002G193800--Sobic001G333500 Sobic002G193800--Sobic001G168250 Sobic002G193800--Sobic009G237100 Sobic002G193800--Sobic007G140800 Sobic004G193700--Sobic002G091600 Sobic003G262200 Sobic003G262200 Sobic004G193700--Sobic003G262200 Sobic003G229300 Sobic003G229300 Sobic004G193700--Sobic003G229300 Sobic004G193700--Sobic006G092000 Sobic003G253600 Sobic003G253600 Sobic004G193700--Sobic003G253600 Sobic003G119600 Sobic003G119600 Sobic004G193700--Sobic003G119600 Sobic005G059800 Sobic005G059800 Sobic004G193700--Sobic005G059800 Sobic001G085600 Sobic001G085600 Sobic004G193700--Sobic001G085600 Sobic006G185100 Sobic006G185100 Sobic004G193700--Sobic006G185100 Sobic002G091600--Sobic004G193700 Sobic003G110800 Sobic003G110800 Sobic002G091600--Sobic003G110800 Sobic007G136200 Sobic007G136200 Sobic002G091600--Sobic007G136200 Sobic002G091600--Sobic003G119600 Sobic001G097100 Sobic001G097100 Sobic002G091600--Sobic001G097100 Sobic001G530900 Sobic001G530900 Sobic002G091600--Sobic001G530900 Sobic005G084500 Sobic005G084500 Sobic002G091600--Sobic005G084500 Sobic009G215500 Sobic009G215500 Sobic002G091600--Sobic009G215500 Sobic005G106600 Sobic005G106600 Sobic002G091600--Sobic005G106600 Sobic006G092000--Sobic003G110800 Sobic005G100600 Sobic005G100600 Sobic006G092000--Sobic005G100600 Sobic006G092000--Sobic004G193700 Sobic006G092000--Sobic005G059800 Sobic006G092000--Sobic003G229300 Sobic006G173600 Sobic006G173600 Sobic006G092000--Sobic006G173600 Sobic006G092000--Sobic008G115900 Sobic006G092000--Sobic002G091600 Sobic001G516901 Sobic001G516901 Sobic006G092000--Sobic001G516901 Sobic004G307400 Sobic004G307400 Sobic005G149400--Sobic004G307400 Sobic004G336000 Sobic004G336000 Sobic005G149400--Sobic004G336000 Sobic005G149400--Sobic004G016400 SobicK031800 SobicK031800 Sobic005G149400--SobicK031800 Sobic003G387100 Sobic003G387100 Sobic005G149400--Sobic003G387100 Sobic009G030800 Sobic009G030800 Sobic005G149400--Sobic009G030800 Sobic001G309300 Sobic001G309300 Sobic005G149400--Sobic001G309300 Sobic009G059300 Sobic009G059300 Sobic005G149400--Sobic009G059300 Sobic008G073100 Sobic008G073100 Sobic005G149400--Sobic008G073100 Sobic008G115900--Sobic007G136200 Sobic006G158100 Sobic006G158100 Sobic008G115900--Sobic006G158100 Sobic006G130300 Sobic006G130300 Sobic008G115900--Sobic006G130300 Sobic008G115900--Sobic006G207800 Sobic004G356400 Sobic004G356400 Sobic008G115900--Sobic004G356400 Sobic001G017300 Sobic001G017300 Sobic008G115900--Sobic001G017300 Sobic010G153900 Sobic010G153900 Sobic008G115900--Sobic010G153900 Sobic008G115900--Sobic003G229300 Sobic001G491000 Sobic001G491000 Sobic008G115900--Sobic001G491000 Sobic003G160200 Sobic003G160200 Sobic001G168250--Sobic003G160200 Sobic008G130000 Sobic008G130000 Sobic001G168250--Sobic008G130000 Sobic001G168250--Sobic002G193800 Sobic001G168250--Sobic004G274100 Sobic010G176200 Sobic010G176200 Sobic001G168250--Sobic010G176200 Sobic001G168250--Sobic009G113800 Sobic001G308200 Sobic001G308200 Sobic001G168250--Sobic001G308200 Sobic001G168250--Sobic009G237100 Sobic007G123500 Sobic007G123500 Sobic001G168250--Sobic007G123500
Octagon: transcription factors


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