Gene annotation
Transcriptome id Sobic.004G085600.1
Synonym TED5, HY5, Sb04g007060
Functional annotation bZIP transcription factor domain containing protein, expressed
UniProt C5XXX1
Pfam PF00170
Panther DB PTHR13301 PTHR13301:SF68
NCBI CDD -
KEGG Orthology K16241; transcription factor HY5
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G11260 : Basic-leucine zipper (bZIP) transcription factor family protein
RAP-DB (Rice) LOC_Os02g10860.1 : bZIP transcription factor domain containing protein, expressed
MaizeGDB (Corn) Zm00025a019514
Brachypodium KQJ93926
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G161500 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
2 Sobic.004G035100 UOS1, putative, expressed -
3 Sobic.004G322600 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain(PubMedID : 26465154)@protein kinase domain containing protein, expressed -
4 Sobic.001G073300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
5 Sobic.009G194500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.010G231300 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
7 Sobic.003G409700 rieske domain containing protein, expressed -
8 Sobic.002G196600 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
9 Sobic.002G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@integral membrane transporter family protein, putative, expressed -
10 Sobic.008G038500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease III-like protein 1, putative, expressed K10773: endonuclease III
11 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
12 Sobic.007G065600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carotenoid synthesis regulator CarF, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
13 Sobic.010G173400 down-regulated TF in developmental senescence(PubMedID : 27586543)@GATA zinc finger domain containing protein, expressed -
14 Sobic.010G104800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
15 Sobic.007G140700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aldehyde dehydrogenase, putative, expressed K00131: glyceraldehyde-3-phosphate dehydrogenase (NADP+)
16 Sobic.004G322700 - -
17 Sobic.003G340300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nodulin, putative, expressed -
18 Sobic.001G011400 CRAL/TRIO domain containing protein, expressed -
19 Sobic.003G139500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CDPK - CBL-interacting protein kinase 1(PubMedID : 31721651)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.9 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
20 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic004G085600 Sobic004G085600 Sobic006G161500 Sobic006G161500 Sobic004G085600--Sobic006G161500 Sobic004G035100 Sobic004G035100 Sobic004G085600--Sobic004G035100 Sobic004G322600 Sobic004G322600 Sobic004G085600--Sobic004G322600 Sobic001G073300 Sobic001G073300 Sobic004G085600--Sobic001G073300 Sobic009G194500 Sobic009G194500 Sobic004G085600--Sobic009G194500 Sobic010G231300 Sobic010G231300 Sobic004G085600--Sobic010G231300 Sobic003G409700 Sobic003G409700 Sobic004G085600--Sobic003G409700 Sobic002G196600 Sobic002G196600 Sobic004G085600--Sobic002G196600 Sobic002G119100 Sobic002G119100 Sobic004G085600--Sobic002G119100 Sobic004G128900 Sobic004G128900 Sobic006G161500--Sobic004G128900 Sobic006G161500--Sobic010G231300 Sobic006G161500--Sobic003G409700 Sobic006G235400 Sobic006G235400 Sobic006G161500--Sobic006G235400 Sobic006G161500--Sobic004G322600 Sobic006G161500--Sobic004G035100 Sobic006G161500--Sobic001G073300 Sobic006G161500--Sobic002G119100 Sobic006G161500--Sobic009G194500 Sobic004G035100--Sobic006G161500 Sobic003G340300 Sobic003G340300 Sobic004G035100--Sobic003G340300 Sobic002G161400 Sobic002G161400 Sobic004G035100--Sobic002G161400 Sobic004G035100--Sobic004G322600 Sobic004G035100--Sobic004G128900 Sobic003G339200 Sobic003G339200 Sobic004G035100--Sobic003G339200 Sobic004G344600 Sobic004G344600 Sobic004G035100--Sobic004G344600 Sobic007G065600 Sobic007G065600 Sobic004G035100--Sobic007G065600 Sobic006G191500 Sobic006G191500 Sobic004G035100--Sobic006G191500 Sobic004G322700 Sobic004G322700 Sobic004G322600--Sobic004G322700 Sobic004G322600--Sobic002G119100 Sobic004G322600--Sobic006G161500 Sobic004G322600--Sobic009G194500 Sobic004G322600--Sobic004G035100 Sobic008G038500 Sobic008G038500 Sobic004G322600--Sobic008G038500 Sobic001G331600 Sobic001G331600 Sobic004G322600--Sobic001G331600 Sobic007G227100 Sobic007G227100 Sobic004G322600--Sobic007G227100 Sobic001G244600 Sobic001G244600 Sobic004G322600--Sobic001G244600 Sobic010G104800 Sobic010G104800 Sobic001G073300--Sobic010G104800 Sobic001G073300--Sobic006G161500 Sobic009G256100 Sobic009G256100 Sobic001G073300--Sobic009G256100 Sobic001G073300--Sobic001G244600 Sobic001G073300--Sobic003G409700 Sobic002G390100 Sobic002G390100 Sobic001G073300--Sobic002G390100 Sobic001G073300--Sobic010G231300 Sobic003G042900 Sobic003G042900 Sobic001G073300--Sobic003G042900 Sobic008G129900 Sobic008G129900 Sobic001G073300--Sobic008G129900 Sobic009G194500--Sobic002G119100 Sobic009G194500--Sobic006G161500 Sobic009G194500--Sobic010G231300 Sobic009G194500--Sobic004G322600 Sobic009G194500--Sobic008G038500 Sobic003G314000 Sobic003G314000 Sobic009G194500--Sobic003G314000 Sobic007G140700 Sobic007G140700 Sobic009G194500--Sobic007G140700 Sobic004G127800 Sobic004G127800 Sobic009G194500--Sobic004G127800 Sobic009G194500--Sobic006G235400 Sobic010G231300--Sobic008G129900 Sobic010G231300--Sobic006G235400 Sobic001G217900 Sobic001G217900 Sobic010G231300--Sobic001G217900 Sobic001G263100 Sobic001G263100 Sobic010G231300--Sobic001G263100 Sobic010G231300--Sobic006G161500 Sobic007G133000 Sobic007G133000 Sobic010G231300--Sobic007G133000 Sobic003G341300 Sobic003G341300 Sobic010G231300--Sobic003G341300 Sobic001G180200 Sobic001G180200 Sobic010G231300--Sobic001G180200 Sobic002G162400 Sobic002G162400 Sobic010G231300--Sobic002G162400 Sobic003G409700--Sobic003G341300 Sobic009G133700 Sobic009G133700 Sobic003G409700--Sobic009G133700 Sobic007G135800 Sobic007G135800 Sobic003G409700--Sobic007G135800 Sobic003G409700--Sobic006G235400 Sobic003G409700--Sobic006G161500 Sobic003G380200 Sobic003G380200 Sobic003G409700--Sobic003G380200 Sobic003G409700--Sobic004G128900 Sobic007G157300 Sobic007G157300 Sobic003G409700--Sobic007G157300 Sobic003G228300 Sobic003G228300 Sobic003G409700--Sobic003G228300 Sobic002G196600--Sobic002G390100 Sobic006G093100 Sobic006G093100 Sobic002G196600--Sobic006G093100 Sobic002G196600--Sobic010G231300 Sobic002G196600--Sobic003G042900 Sobic002G219300 Sobic002G219300 Sobic002G196600--Sobic002G219300 Sobic002G196600--Sobic001G073300 Sobic001G244700 Sobic001G244700 Sobic002G196600--Sobic001G244700 Sobic002G404800 Sobic002G404800 Sobic002G196600--Sobic002G404800 Sobic002G196600--Sobic006G161500 Sobic002G119100--Sobic009G194500 Sobic002G119100--Sobic004G322600 Sobic002G119100--Sobic006G161500 Sobic002G119100--Sobic008G038500 Sobic002G119100--Sobic004G127800 Sobic002G119100--Sobic001G244600 Sobic002G119100--Sobic004G322700 Sobic002G119100--Sobic007G227100 Sobic002G293500 Sobic002G293500 Sobic002G119100--Sobic002G293500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.