Gene annotation
Transcriptome id Sobic.006G147700.1
Synonym THA1, Sb06g022630
Functional annotation L-allo-threonine aldolase, putative, expressed
UniProt C5YCC5
Pfam PF00155
Panther DB PTHR10289:SF5 PTHR10289
NCBI CDD KOG1368; Threonine aldolase
KEGG Orthology K01620; threonine aldolase
Gene Ontology GO:0009058; biosynthetic process


Orthologs (automatic annotation)
TAIR AT1G08630 : threonine aldolase 1
RAP-DB (Rice) LOC_Os04g43650.1 : L-allo-threonine aldolase, putative, expressed
MaizeGDB (Corn) Zm00025a010703 , Zm00025a010706
Brachypodium KQJ83601 , KQJ83600
Barley HORVU2Hr1G097910.10 , HORVU2Hr1G097910.11 , HORVU2Hr1G097910.12 , HORVU2Hr1G097910.13 , HORVU4Hr1G085690.8 , HORVU4Hr1G085690.9 , HORVU4Hr1G085690.4 , HORVU4Hr1G085690.5 , HORVU4Hr1G085690.6 , HORVU4Hr1G085690.7 , HORVU4Hr1G085690.1 , HORVU4Hr1G085690.2 , HORVU4Hr1G085690.3 , HORVU2Hr1G097910.14 , HORVU0Hr1G005160.9 , HORVU0Hr1G005160.6 , HORVU0Hr1G005160.7 , HORVU0Hr1G005160.4 , HORVU0Hr1G005160.5 , HORVU0Hr1G005160.2 , HORVU0Hr1G005160.3 , HORVU0Hr1G005160.1 , HORVU0Hr1G005160.14 , HORVU0Hr1G005160.15 , HORVU0Hr1G005160.16 , HORVU0Hr1G005160.17 , HORVU0Hr1G005160.10 , HORVU0Hr1G005160.11 , HORVU0Hr1G005160.12 , HORVU0Hr1G005160.13 , HORVU0Hr1G005160.18 , HORVU2Hr1G097910.2 , HORVU2Hr1G097910.3 , HORVU2Hr1G097910.1 , HORVU2Hr1G097910.6 , HORVU2Hr1G097910.7 , HORVU2Hr1G097910.4 , HORVU2Hr1G097910.5 , HORVU2Hr1G097910.8 , HORVU2Hr1G097910.9 , HORVU0Hr1G005160.8 , HORVU4Hr1G085690.18 , HORVU4Hr1G085690.16 , HORVU4Hr1G085690.17 , HORVU4Hr1G085690.14 , HORVU4Hr1G085690.15 , HORVU4Hr1G085690.13 , HORVU4Hr1G085690.10 , HORVU4Hr1G085690.11
Wheat TraesCS2A02G415800 , TraesCS2A02G415800 , TraesCS4D02G346900 , TraesCS4D02G346900 , TraesCS2D02G379000 , TraesCS5A02G522600 , TraesCS2D02G412800 , TraesCS2D02G412800 , TraesCS2B02G434800 , TraesCS2A02G382700 , TraesCS4B02G352700 , TraesCS5A02G521200 , TraesCS5A02G521200 , TraesCS5A02G521200 , TraesCS2B02G400000 , TraesCS2B02G400000 , TraesCS2B02G400000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G147700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G042300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.002G132000 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
3 Sobic.003G320700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.010G001500 AML1, putative, expressed -
5 Sobic.001G290000 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
6 Sobic.006G087700 T-complex protein 11, putative, expressed -
7 Sobic.009G113000 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
8 Sobic.009G006400 auxin-induced protein 5NG4, putative, expressed -
9 Sobic.001G436900 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
10 Sobic.001G137100 homeodomain protein, putative, expressed -
11 Sobic.003G322700 expressed protein -
12 Sobic.008G062200 dehydrogenase E1 component domain containing protein, expressed K00166: BCKDHA, 2-oxoisovalerate dehydrogenase E1 component alpha subunit
13 Sobic.008G094400 Nodulin MtN3 family protein(PubMedID : 26465154)@Nodulin MtN3 family protein(PubMedID : 26465154)@Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
14 Sobic.007G075400 expressed protein -
15 Sobic.010G224000 molybdenum cofactor sulfurase, putative, expressed K15631: molybdenum cofactor sulfurtransferase
16 Sobic.001G003000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
17 Sobic.003G372500 DUF803 domain containing, putative, expressed -
18 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4
19 Sobic.002G375300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
20 Sobic.009G152700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I


Gene co-expression network
sample Sobic006G147700 Sobic006G147700 Sobic004G042300 Sobic004G042300 Sobic006G147700--Sobic004G042300 Sobic002G132000 Sobic002G132000 Sobic006G147700--Sobic002G132000 Sobic003G320700 Sobic003G320700 Sobic006G147700--Sobic003G320700 Sobic010G001500 Sobic010G001500 Sobic006G147700--Sobic010G001500 Sobic001G290000 Sobic001G290000 Sobic006G147700--Sobic001G290000 Sobic006G087700 Sobic006G087700 Sobic006G147700--Sobic006G087700 Sobic009G113000 Sobic009G113000 Sobic006G147700--Sobic009G113000 Sobic009G006400 Sobic009G006400 Sobic006G147700--Sobic009G006400 Sobic001G436900 Sobic001G436900 Sobic006G147700--Sobic001G436900 Sobic006G052100 Sobic006G052100 Sobic004G042300--Sobic006G052100 Sobic009G193700 Sobic009G193700 Sobic004G042300--Sobic009G193700 Sobic008G062200 Sobic008G062200 Sobic004G042300--Sobic008G062200 Sobic004G102400 Sobic004G102400 Sobic004G042300--Sobic004G102400 Sobic004G042300--Sobic003G320700 Sobic003G329400 Sobic003G329400 Sobic004G042300--Sobic003G329400 Sobic004G042300--Sobic002G132000 Sobic001G089800 Sobic001G089800 Sobic004G042300--Sobic001G089800 Sobic004G042300--Sobic001G290000 Sobic004G006200 Sobic004G006200 Sobic002G132000--Sobic004G006200 Sobic004G264400 Sobic004G264400 Sobic002G132000--Sobic004G264400 Sobic007G024700 Sobic007G024700 Sobic002G132000--Sobic007G024700 Sobic004G295800 Sobic004G295800 Sobic002G132000--Sobic004G295800 Sobic001G109800 Sobic001G109800 Sobic002G132000--Sobic001G109800 Sobic002G132000--Sobic001G290000 Sobic002G132000--Sobic009G113000 Sobic003G305200 Sobic003G305200 Sobic002G132000--Sobic003G305200 Sobic001G137100 Sobic001G137100 Sobic002G132000--Sobic001G137100 Sobic003G301900 Sobic003G301900 Sobic003G320700--Sobic003G301900 Sobic006G104600 Sobic006G104600 Sobic003G320700--Sobic006G104600 Sobic001G517800 Sobic001G517800 Sobic003G320700--Sobic001G517800 Sobic003G320700--Sobic001G436900 Sobic007G075400 Sobic007G075400 Sobic003G320700--Sobic007G075400 Sobic006G204900 Sobic006G204900 Sobic003G320700--Sobic006G204900 Sobic003G320700--Sobic006G087700 Sobic003G322700 Sobic003G322700 Sobic003G320700--Sobic003G322700 Sobic003G320700--Sobic009G193700 Sobic010G001500--Sobic003G322700 Sobic010G001500--Sobic007G024700 Sobic004G355000 Sobic004G355000 Sobic010G001500--Sobic004G355000 Sobic010G001500--Sobic006G204900 Sobic010G224000 Sobic010G224000 Sobic010G001500--Sobic010G224000 Sobic002G419800 Sobic002G419800 Sobic010G001500--Sobic002G419800 Sobic001G207400 Sobic001G207400 Sobic010G001500--Sobic001G207400 Sobic001G178700 Sobic001G178700 Sobic010G001500--Sobic001G178700 Sobic001G146800 Sobic001G146800 Sobic010G001500--Sobic001G146800 Sobic001G224600 Sobic001G224600 Sobic001G290000--Sobic001G224600 Sobic001G290000--Sobic007G024700 Sobic001G290000--Sobic002G132000 Sobic001G290000--Sobic004G295800 Sobic008G191100 Sobic008G191100 Sobic001G290000--Sobic008G191100 Sobic001G290000--Sobic004G264400 Sobic001G290000--Sobic002G419800 Sobic001G290000--Sobic001G137100 Sobic009G249200 Sobic009G249200 Sobic001G290000--Sobic009G249200 Sobic006G087700--Sobic007G075400 Sobic006G087700--Sobic003G322700 Sobic006G233500 Sobic006G233500 Sobic006G087700--Sobic006G233500 Sobic010G139600 Sobic010G139600 Sobic006G087700--Sobic010G139600 Sobic006G087700--Sobic003G301900 Sobic006G087700--Sobic003G320700 Sobic006G087700--Sobic006G204900 Sobic002G128200 Sobic002G128200 Sobic006G087700--Sobic002G128200 Sobic006G043600 Sobic006G043600 Sobic006G087700--Sobic006G043600 Sobic003G118200 Sobic003G118200 Sobic009G113000--Sobic003G118200 Sobic009G113000--Sobic004G264400 Sobic009G053900 Sobic009G053900 Sobic009G113000--Sobic009G053900 Sobic009G113000--Sobic007G075400 Sobic004G347400 Sobic004G347400 Sobic009G113000--Sobic004G347400 Sobic001G121200 Sobic001G121200 Sobic009G113000--Sobic001G121200 Sobic004G331100 Sobic004G331100 Sobic009G113000--Sobic004G331100 Sobic004G200200 Sobic004G200200 Sobic009G113000--Sobic004G200200 Sobic009G113000--Sobic001G146800 Sobic001G496100 Sobic001G496100 Sobic009G006400--Sobic001G496100 Sobic009G207600 Sobic009G207600 Sobic009G006400--Sobic009G207600 Sobic009G006400--Sobic003G322700 Sobic003G010600 Sobic003G010600 Sobic009G006400--Sobic003G010600 Sobic001G474500 Sobic001G474500 Sobic009G006400--Sobic001G474500 Sobic002G266000 Sobic002G266000 Sobic009G006400--Sobic002G266000 Sobic001G176501 Sobic001G176501 Sobic009G006400--Sobic001G176501 Sobic004G266400 Sobic004G266400 Sobic009G006400--Sobic004G266400 Sobic009G006400--Sobic006G087700 Sobic001G436900--Sobic004G331100 Sobic001G436900--Sobic003G320700 Sobic004G065000 Sobic004G065000 Sobic001G436900--Sobic004G065000 Sobic006G271200 Sobic006G271200 Sobic001G436900--Sobic006G271200 Sobic001G436900--Sobic006G204900 Sobic001G436900--Sobic007G075400 Sobic001G436900--Sobic009G113000 Sobic002G382600 Sobic002G382600 Sobic001G436900--Sobic002G382600 Sobic010G264200 Sobic010G264200 Sobic001G436900--Sobic010G264200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.