Gene annotation
Transcriptome id Sobic.010G202000.1
Synonym Sb10g025000, SVL5
Functional annotation glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
UniProt C5Z6L9
Pfam PF03009
Panther DB PTHR23344 PTHR23344:SF5
NCBI CDD KOG2258; Glycerophosphoryl diester phosphodiesterase
KEGG Orthology -
Gene Ontology GO:0008081; phosphoric diester hydrolase activity GO:0006629lipid metabolic process GO:0008889glycerophosphodiester phosphodiesterase activity


Orthologs (automatic annotation)
TAIR AT5G58170 : SHV3-like 5
RAP-DB (Rice) LOC_Os02g09450.1 : glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G170100 - -
2 Sobic.002G144933 - -
3 Sobic.003G268300 surp module family protein, putative, expressed -
4 Sobic.007G113800 early-responsive to dehydration protein-related, putative, expressed -
5 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -
6 Sobic.001G274200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
7 Sobic.007G037900 oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed -
8 Sobic.007G096600 - -
9 Sobic.005G110472 - -
10 Sobic.001G162300 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
11 Sobic.006G066650 - -
12 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
13 Sobic.002G320500 MYB family transcription factor, putative, expressed -
14 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
15 Sobic.010G277500 expressed protein -
16 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
17 Sobic.003G179201 - -
18 Sobic.001G497200 expressed protein -
19 Sobic.006G246900 expressed protein -
20 Sobic.002G380500 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12891: splicing factor, arginine/serine-rich 2


Gene co-expression network
sample Sobic010G202000 Sobic010G202000 Sobic003G170100 Sobic003G170100 Sobic010G202000--Sobic003G170100 Sobic002G144933 Sobic002G144933 Sobic010G202000--Sobic002G144933 Sobic003G268300 Sobic003G268300 Sobic010G202000--Sobic003G268300 Sobic007G113800 Sobic007G113800 Sobic010G202000--Sobic007G113800 Sobic008G173900 Sobic008G173900 Sobic010G202000--Sobic008G173900 Sobic001G274200 Sobic001G274200 Sobic010G202000--Sobic001G274200 Sobic007G037900 Sobic007G037900 Sobic010G202000--Sobic007G037900 Sobic007G096600 Sobic007G096600 Sobic010G202000--Sobic007G096600 Sobic005G110472 Sobic005G110472 Sobic010G202000--Sobic005G110472 Sobic003G170100--Sobic005G110472 Sobic003G170100--Sobic003G268300 Sobic003G200200 Sobic003G200200 Sobic003G170100--Sobic003G200200 Sobic003G170100--Sobic007G096600 Sobic003G170100--Sobic002G144933 Sobic002G157000 Sobic002G157000 Sobic003G170100--Sobic002G157000 Sobic001G152320 Sobic001G152320 Sobic003G170100--Sobic001G152320 Sobic007G137900 Sobic007G137900 Sobic003G170100--Sobic007G137900 Sobic001G162300 Sobic001G162300 Sobic003G170100--Sobic001G162300 Sobic002G144933--Sobic008G173900 Sobic002G144933--Sobic002G157000 Sobic001G420200 Sobic001G420200 Sobic002G144933--Sobic001G420200 Sobic002G144933--Sobic003G268300 Sobic002G144933--Sobic001G274200 Sobic002G144933--Sobic007G037900 Sobic004G145500 Sobic004G145500 Sobic002G144933--Sobic004G145500 Sobic002G144933--Sobic003G170100 Sobic009G065100 Sobic009G065100 Sobic002G144933--Sobic009G065100 Sobic003G268300--Sobic007G096600 Sobic003G268300--Sobic002G157000 Sobic003G268300--Sobic001G420200 Sobic003G268300--Sobic003G200200 Sobic002G248400 Sobic002G248400 Sobic003G268300--Sobic002G248400 Sobic009G127900 Sobic009G127900 Sobic003G268300--Sobic009G127900 Sobic007G178700 Sobic007G178700 Sobic003G268300--Sobic007G178700 Sobic003G268300--Sobic007G037900 Sobic003G268300--Sobic008G173900 Sobic003G148000 Sobic003G148000 Sobic007G113800--Sobic003G148000 Sobic006G079400 Sobic006G079400 Sobic007G113800--Sobic006G079400 Sobic007G113800--Sobic005G110472 Sobic007G113800--Sobic010G202000 Sobic005G144400 Sobic005G144400 Sobic007G113800--Sobic005G144400 Sobic001G067850 Sobic001G067850 Sobic007G113800--Sobic001G067850 Sobic002G243900 Sobic002G243900 Sobic007G113800--Sobic002G243900 Sobic006G048500 Sobic006G048500 Sobic007G113800--Sobic006G048500 Sobic003G179201 Sobic003G179201 Sobic007G113800--Sobic003G179201 Sobic008G173900--Sobic002G157000 Sobic008G173900--Sobic002G144933 Sobic008G173900--Sobic001G420200 Sobic008G173900--Sobic003G268300 Sobic008G054500 Sobic008G054500 Sobic008G173900--Sobic008G054500 Sobic008G173900--Sobic003G200200 Sobic008G173900--Sobic001G274200 Sobic001G413500 Sobic001G413500 Sobic008G173900--Sobic001G413500 Sobic008G173900--Sobic007G096600 Sobic001G274200--Sobic001G420200 Sobic001G274200--Sobic007G096600 Sobic001G274200--Sobic003G268300 Sobic001G274200--Sobic008G173900 Sobic001G274200--Sobic002G144933 Sobic001G133466 Sobic001G133466 Sobic001G274200--Sobic001G133466 Sobic001G274200--Sobic007G037900 Sobic001G274200--Sobic002G243900 Sobic010G123901 Sobic010G123901 Sobic001G274200--Sobic010G123901 Sobic007G037900--Sobic003G268300 Sobic007G037900--Sobic001G420200 Sobic006G246900 Sobic006G246900 Sobic007G037900--Sobic006G246900 Sobic007G037900--Sobic002G144933 Sobic007G037900--Sobic001G274200 Sobic007G037900--Sobic009G127900 Sobic007G037900--Sobic001G162300 Sobic004G290800 Sobic004G290800 Sobic007G037900--Sobic004G290800 Sobic007G037900--Sobic002G157000 Sobic007G096600--Sobic002G243900 Sobic007G096600--Sobic003G268300 Sobic003G176500 Sobic003G176500 Sobic007G096600--Sobic003G176500 Sobic007G096600--Sobic001G274200 Sobic007G096600--Sobic003G200200 Sobic007G096600--Sobic005G144400 Sobic007G096600--Sobic003G148000 Sobic003G332800 Sobic003G332800 Sobic007G096600--Sobic003G332800 Sobic007G096600--Sobic001G420200 Sobic005G110472--Sobic003G170100 Sobic005G110472--Sobic007G096600 Sobic005G110472--Sobic003G268300 Sobic003G390400 Sobic003G390400 Sobic005G110472--Sobic003G390400 Sobic005G110472--Sobic002G243900 Sobic005G110472--Sobic003G200200 Sobic005G110472--Sobic007G113800 Sobic005G110472--Sobic007G137900 Sobic005G110472--Sobic003G176500
Octagon: transcription factors


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