Gene annotation
Transcriptome id Sobic.008G015500.1
Synonym Sb08g001370, ELF9
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5YQL8
Pfam PF14237 PF13893 PF00076
Panther DB PTHR15608
NCBI CDD KOG1548; Transcription elongation factor TAT-SF1
KEGG Orthology K13093; HIV Tat-specific factor 1
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G16260 : RNA binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os04g41910.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a013108 , Zm00025a048076 , Zm00025a033402
Brachypodium KQJ83371
Barley HORVU2Hr1G085730.5 , HORVU2Hr1G085730.4 , HORVU2Hr1G085730.7 , HORVU2Hr1G085730.6 , HORVU2Hr1G085730.3 , HORVU2Hr1G085730.2 , HORVU2Hr1G085730.9 , HORVU2Hr1G085730.8 , HORVU2Hr1G085730.11 , HORVU2Hr1G085730.10
Wheat TraesCS2A02G353300 , TraesCS2B02G371200 , TraesCS2B02G371200 , TraesCS2D02G350800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G274200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
2 Sobic.002G154551 - -
3 Sobic.002G243900 - -
4 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
5 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -
6 Sobic.001G318432 - -
7 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
8 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
9 Sobic.002G404700 expressed protein K11367: chromodomain-helicase-DNA-binding protein 1
10 Sobic.002G148232 - -
11 Sobic.003G429650 - -
12 Sobic.007G126600 RNA recognition motif containing protein, putative, expressed K12822: RBM25, RNA-binding protein 25
13 Sobic.007G096600 - -
14 Sobic.006G182900 expressed protein -
15 Sobic.003G332800 GTPase-activating protein, putative, expressed -
16 Sobic.006G048500 - -
17 Sobic.002G031400 OsFBL39 - F-box domain and LRR containing protein, expressed -
18 Sobic.003G372700 expressed protein -
19 Sobic.001G287201 - -
20 Sobic.005G159000 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed -


Gene co-expression network
sample Sobic008G015500 Sobic008G015500 Sobic001G274200 Sobic001G274200 Sobic008G015500--Sobic001G274200 Sobic002G154551 Sobic002G154551 Sobic008G015500--Sobic002G154551 Sobic002G243900 Sobic002G243900 Sobic008G015500--Sobic002G243900 Sobic007G161000 Sobic007G161000 Sobic008G015500--Sobic007G161000 Sobic004G208900 Sobic004G208900 Sobic008G015500--Sobic004G208900 Sobic001G318432 Sobic001G318432 Sobic008G015500--Sobic001G318432 Sobic001G420200 Sobic001G420200 Sobic008G015500--Sobic001G420200 Sobic003G280800 Sobic003G280800 Sobic008G015500--Sobic003G280800 Sobic002G404700 Sobic002G404700 Sobic008G015500--Sobic002G404700 Sobic001G274200--Sobic001G420200 Sobic007G096600 Sobic007G096600 Sobic001G274200--Sobic007G096600 Sobic003G268300 Sobic003G268300 Sobic001G274200--Sobic003G268300 Sobic008G173900 Sobic008G173900 Sobic001G274200--Sobic008G173900 Sobic002G144933 Sobic002G144933 Sobic001G274200--Sobic002G144933 Sobic001G133466 Sobic001G133466 Sobic001G274200--Sobic001G133466 Sobic007G037900 Sobic007G037900 Sobic001G274200--Sobic007G037900 Sobic001G274200--Sobic002G243900 Sobic010G123901 Sobic010G123901 Sobic001G274200--Sobic010G123901 Sobic006G209850 Sobic006G209850 Sobic002G154551--Sobic006G209850 Sobic002G154551--Sobic004G208900 Sobic001G511500 Sobic001G511500 Sobic002G154551--Sobic001G511500 Sobic002G154551--Sobic008G015500 Sobic010G277500 Sobic010G277500 Sobic002G154551--Sobic010G277500 Sobic002G053000 Sobic002G053000 Sobic002G154551--Sobic002G053000 Sobic003G422300 Sobic003G422300 Sobic002G154551--Sobic003G422300 Sobic002G154551--Sobic003G280800 Sobic002G154551--Sobic001G274200 Sobic002G243900--Sobic007G096600 Sobic004G007100 Sobic004G007100 Sobic002G243900--Sobic004G007100 Sobic005G144400 Sobic005G144400 Sobic002G243900--Sobic005G144400 Sobic003G148000 Sobic003G148000 Sobic002G243900--Sobic003G148000 Sobic006G048500 Sobic006G048500 Sobic002G243900--Sobic006G048500 Sobic007G178700 Sobic007G178700 Sobic002G243900--Sobic007G178700 Sobic002G243900--Sobic003G268300 Sobic002G145101 Sobic002G145101 Sobic002G243900--Sobic002G145101 Sobic003G176500 Sobic003G176500 Sobic002G243900--Sobic003G176500 Sobic004G039200 Sobic004G039200 Sobic007G161000--Sobic004G039200 Sobic007G117400 Sobic007G117400 Sobic007G161000--Sobic007G117400 Sobic009G024000 Sobic009G024000 Sobic007G161000--Sobic009G024000 Sobic010G139000 Sobic010G139000 Sobic007G161000--Sobic010G139000 Sobic006G182900 Sobic006G182900 Sobic007G161000--Sobic006G182900 Sobic002G309600 Sobic002G309600 Sobic007G161000--Sobic002G309600 Sobic004G314000 Sobic004G314000 Sobic007G161000--Sobic004G314000 Sobic002G134200 Sobic002G134200 Sobic007G161000--Sobic002G134200 Sobic008G028700 Sobic008G028700 Sobic007G161000--Sobic008G028700 Sobic009G040600 Sobic009G040600 Sobic004G208900--Sobic009G040600 Sobic004G208900--Sobic010G277500 Sobic003G052200 Sobic003G052200 Sobic004G208900--Sobic003G052200 Sobic004G208900--Sobic010G139000 Sobic008G113100 Sobic008G113100 Sobic004G208900--Sobic008G113100 Sobic002G006900 Sobic002G006900 Sobic004G208900--Sobic002G006900 Sobic004G208900--Sobic008G028700 Sobic004G208900--Sobic003G280800 Sobic009G126400 Sobic009G126400 Sobic004G208900--Sobic009G126400 Sobic001G214300 Sobic001G214300 Sobic001G318432--Sobic001G214300 Sobic006G048600 Sobic006G048600 Sobic001G318432--Sobic006G048600 Sobic003G029700 Sobic003G029700 Sobic001G318432--Sobic003G029700 Sobic006G228500 Sobic006G228500 Sobic001G318432--Sobic006G228500 Sobic004G341900 Sobic004G341900 Sobic001G318432--Sobic004G341900 Sobic001G318432--Sobic006G048500 Sobic003G429650 Sobic003G429650 Sobic001G318432--Sobic003G429650 Sobic001G318432--Sobic002G006900 Sobic001G318432--Sobic006G182900 Sobic001G420200--Sobic001G274200 Sobic002G157000 Sobic002G157000 Sobic001G420200--Sobic002G157000 Sobic001G420200--Sobic003G268300 Sobic001G420200--Sobic008G173900 Sobic002G248400 Sobic002G248400 Sobic001G420200--Sobic002G248400 Sobic001G420200--Sobic007G096600 Sobic001G420200--Sobic007G037900 Sobic001G420200--Sobic002G144933 Sobic001G420200--Sobic007G178700 Sobic003G280800--Sobic002G309600 Sobic001G071400 Sobic001G071400 Sobic003G280800--Sobic001G071400 Sobic003G280800--Sobic002G134200 Sobic003G280800--Sobic006G209850 Sobic003G119000 Sobic003G119000 Sobic003G280800--Sobic003G119000 Sobic001G474600 Sobic001G474600 Sobic003G280800--Sobic001G474600 Sobic003G280800--Sobic007G117400 Sobic006G216800 Sobic006G216800 Sobic003G280800--Sobic006G216800 Sobic003G372700 Sobic003G372700 Sobic003G280800--Sobic003G372700 Sobic002G405800 Sobic002G405800 Sobic002G404700--Sobic002G405800 Sobic003G059750 Sobic003G059750 Sobic002G404700--Sobic003G059750 Sobic002G404700--Sobic002G309600 Sobic007G126600 Sobic007G126600 Sobic002G404700--Sobic007G126600 Sobic002G404700--Sobic004G314000 Sobic005G112300 Sobic005G112300 Sobic002G404700--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic002G404700--Sobic010G279450 Sobic002G404700--Sobic003G119000 Sobic001G241200 Sobic001G241200 Sobic002G404700--Sobic001G241200
Octagon: transcription factors


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