Gene annotation
Transcriptome id Sobic.009G223600.1
Synonym Sb09g027720
Functional annotation OsFBX53 - F-box domain containing protein, expressed
UniProt C5YV27
Pfam PF08268 PF00646
Panther DB PTHR32133 PTHR32133:SF89
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G07870 : F-box and associated interaction domains-containing protein
RAP-DB (Rice) LOC_Os02g35560.1 : OsFBX53 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS1D02G320500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G133900 exonuclease, putative, expressed K18417: ERI1 exoribonuclease 2
2 Sobic.001G124200 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
3 Sobic.004G325400 cyclic nucleotide-gated ion channel 14, putative, expressed K05391: cyclic nucleotide gated channel, plant
4 Sobic.001G094900 protein transport protein Sec23B, putative, expressed K14006: protein transport protein SEC23
5 Sobic.007G009400 bromodomain domain containing protein, expressed -
6 Sobic.010G279700 signal peptide peptidase-like 2B, putative, expressed -
7 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
8 Sobic.001G008200 expressed protein K13211: GC-rich sequence DNA-binding factor
9 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
10 Sobic.002G034600 zinc ion binding protein, putative, expressed -
11 Sobic.002G366400 histone deacetylase, putative, expressed K11407: histone deacetylase 6
12 Sobic.008G179700 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
13 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
14 Sobic.002G083500 OsFBX136 - F-box domain containing protein, expressed -
15 Sobic.007G078500 serine/threonine-protein kinase HT1, putative, expressed -
16 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
18 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
19 Sobic.003G053800 WD40-like domain containing protein, putative, expressed -
20 Sobic.006G118700 MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic009G223600 Sobic009G223600 Sobic003G133900 Sobic003G133900 Sobic009G223600--Sobic003G133900 Sobic001G124200 Sobic001G124200 Sobic009G223600--Sobic001G124200 Sobic004G325400 Sobic004G325400 Sobic009G223600--Sobic004G325400 Sobic001G094900 Sobic001G094900 Sobic009G223600--Sobic001G094900 Sobic007G009400 Sobic007G009400 Sobic009G223600--Sobic007G009400 Sobic010G279700 Sobic010G279700 Sobic009G223600--Sobic010G279700 Sobic001G143500 Sobic001G143500 Sobic009G223600--Sobic001G143500 Sobic001G008200 Sobic001G008200 Sobic009G223600--Sobic001G008200 Sobic001G493200 Sobic001G493200 Sobic009G223600--Sobic001G493200 Sobic004G309900 Sobic004G309900 Sobic003G133900--Sobic004G309900 Sobic003G133900--Sobic001G493200 Sobic002G083500 Sobic002G083500 Sobic003G133900--Sobic002G083500 Sobic001G398800 Sobic001G398800 Sobic003G133900--Sobic001G398800 Sobic007G183900 Sobic007G183900 Sobic003G133900--Sobic007G183900 Sobic005G172500 Sobic005G172500 Sobic003G133900--Sobic005G172500 Sobic006G210000 Sobic006G210000 Sobic003G133900--Sobic006G210000 Sobic004G200200 Sobic004G200200 Sobic003G133900--Sobic004G200200 Sobic007G071200 Sobic007G071200 Sobic003G133900--Sobic007G071200 Sobic010G205800 Sobic010G205800 Sobic001G124200--Sobic010G205800 Sobic010G020300 Sobic010G020300 Sobic001G124200--Sobic010G020300 Sobic003G155900 Sobic003G155900 Sobic001G124200--Sobic003G155900 Sobic004G039600 Sobic004G039600 Sobic001G124200--Sobic004G039600 Sobic010G278200 Sobic010G278200 Sobic001G124200--Sobic010G278200 Sobic007G132100 Sobic007G132100 Sobic001G124200--Sobic007G132100 Sobic009G138100 Sobic009G138100 Sobic001G124200--Sobic009G138100 Sobic001G390800 Sobic001G390800 Sobic001G124200--Sobic001G390800 Sobic009G228700 Sobic009G228700 Sobic001G124200--Sobic009G228700 Sobic009G257800 Sobic009G257800 Sobic004G325400--Sobic009G257800 Sobic007G027700 Sobic007G027700 Sobic004G325400--Sobic007G027700 Sobic004G325400--Sobic007G009400 Sobic003G401100 Sobic003G401100 Sobic004G325400--Sobic003G401100 Sobic004G325400--Sobic001G143500 Sobic004G021200 Sobic004G021200 Sobic004G325400--Sobic004G021200 Sobic003G401000 Sobic003G401000 Sobic004G325400--Sobic003G401000 Sobic004G072100 Sobic004G072100 Sobic004G325400--Sobic004G072100 Sobic008G127400 Sobic008G127400 Sobic004G325400--Sobic008G127400 Sobic001G094900--Sobic010G279700 Sobic006G118700 Sobic006G118700 Sobic001G094900--Sobic006G118700 Sobic001G281600 Sobic001G281600 Sobic001G094900--Sobic001G281600 Sobic008G092300 Sobic008G092300 Sobic001G094900--Sobic008G092300 Sobic001G094900--Sobic007G183900 Sobic008G179700 Sobic008G179700 Sobic001G094900--Sobic008G179700 Sobic001G094900--Sobic001G124200 Sobic001G261456 Sobic001G261456 Sobic001G094900--Sobic001G261456 Sobic001G094900--Sobic003G401100 Sobic003G241200 Sobic003G241200 Sobic007G009400--Sobic003G241200 Sobic007G009400--Sobic003G401100 Sobic004G205600 Sobic004G205600 Sobic007G009400--Sobic004G205600 Sobic010G101800 Sobic010G101800 Sobic007G009400--Sobic010G101800 Sobic007G104800 Sobic007G104800 Sobic007G009400--Sobic007G104800 Sobic007G009400--Sobic004G325400 Sobic002G388200 Sobic002G388200 Sobic007G009400--Sobic002G388200 Sobic001G409600 Sobic001G409600 Sobic007G009400--Sobic001G409600 Sobic003G081000 Sobic003G081000 Sobic007G009400--Sobic003G081000 Sobic010G279700--Sobic001G281600 Sobic008G083000 Sobic008G083000 Sobic010G279700--Sobic008G083000 Sobic010G279700--Sobic003G401100 Sobic010G279700--Sobic001G094900 Sobic007G191700 Sobic007G191700 Sobic010G279700--Sobic007G191700 Sobic005G106500 Sobic005G106500 Sobic010G279700--Sobic005G106500 Sobic010G279700--Sobic008G092300 Sobic007G203200 Sobic007G203200 Sobic010G279700--Sobic007G203200 Sobic010G279700--Sobic004G021200 Sobic006G252700 Sobic006G252700 Sobic001G143500--Sobic006G252700 Sobic007G111100 Sobic007G111100 Sobic001G143500--Sobic007G111100 Sobic002G313500 Sobic002G313500 Sobic001G143500--Sobic002G313500 Sobic004G350100 Sobic004G350100 Sobic001G143500--Sobic004G350100 Sobic001G143500--Sobic003G401100 Sobic003G439800 Sobic003G439800 Sobic001G143500--Sobic003G439800 Sobic001G466700 Sobic001G466700 Sobic001G143500--Sobic001G466700 Sobic006G278700 Sobic006G278700 Sobic001G143500--Sobic006G278700 Sobic006G267300 Sobic006G267300 Sobic001G143500--Sobic006G267300 Sobic001G008200--Sobic004G309900 Sobic001G008200--Sobic005G172500 Sobic001G227400 Sobic001G227400 Sobic001G008200--Sobic001G227400 Sobic001G008200--Sobic001G493200 Sobic001G008200--Sobic003G133900 Sobic006G240100 Sobic006G240100 Sobic001G008200--Sobic006G240100 Sobic004G155600 Sobic004G155600 Sobic001G008200--Sobic004G155600 Sobic001G473600 Sobic001G473600 Sobic001G008200--Sobic001G473600 Sobic001G145400 Sobic001G145400 Sobic001G008200--Sobic001G145400 Sobic009G084900 Sobic009G084900 Sobic001G493200--Sobic009G084900 Sobic003G266001 Sobic003G266001 Sobic001G493200--Sobic003G266001 Sobic010G059500 Sobic010G059500 Sobic001G493200--Sobic010G059500 Sobic001G433800 Sobic001G433800 Sobic001G493200--Sobic001G433800 Sobic001G493200--Sobic004G072100 Sobic004G096400 Sobic004G096400 Sobic001G493200--Sobic004G096400 Sobic001G493200--Sobic007G132100 Sobic006G077200 Sobic006G077200 Sobic001G493200--Sobic006G077200 Sobic003G408600 Sobic003G408600 Sobic001G493200--Sobic003G408600
Octagon: transcription factors


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