Gene annotation
| Transcriptome id | Sobic.003G052300.1 |
|---|---|
| Synonym | Sb03g004540, SIP1 |
| Functional annotation | Raffinose synthase family protein (PubMedID : 26465154) uncharacterized glycosyltransferase, putative, expressed |
| UniProt | C5XNF4 |
| Pfam | PF05691 |
| Panther DB | PTHR31268 PTHR31268:SF2 |
| NCBI CDD | - |
| KEGG Orthology | K06617; raffinose synthase |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G40390 : Raffinose synthase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g07530.1 : uncharacterized glycosyltransferase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a000896 , Zm00025a023264 |
| Brachypodium | KQK19399 , KQK02890 , KQK18817 , KQK19400 |
| Barley | HORVU3Hr1G016430.3 , HORVU3Hr1G016430.2 , HORVU3Hr1G016430.1 , HORVU3Hr1G016430.4 |
| Wheat | TraesCS3D02G092900 , TraesCS3A02G113900 , TraesCS3A02G113900 , TraesCS7A02G134100 , TraesCS7B02G035200 , TraesCS7B02G035200 , TraesCS3B02G108000 , TraesCS1A02G434900 , TraesCS1D02G444000 , TraesCS3D02G092900 , TraesCS3D02G116400 , TraesCS3D02G116400 , TraesCS3A02G092800 , TraesCS7D02G133500 , TraesCS7D02G133500 |
| Populus | - |
JBrowse
| Sobic.003G052300 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G183200 | LOL3, putative, expressed | - |
| 2 | Sobic.006G102400 | transporter family protein, putative, expressed | - |
| 3 | Sobic.008G117800 | OsGrx_C12 - glutaredoxin subgroup III, expressed | K03676: grxC, GLRX, glutaredoxin 3 |
| 4 | Sobic.007G059500 | down-regulated TF in developmental senescence(PubMedID : 27586543)@tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed | - |
| 5 | Sobic.001G338700 | tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed | - |
| 6 | Sobic.001G217700 | possible lysine decarboxylase domain containing protein, expressed | - |
| 7 | Sobic.010G241300 | -(PubMedID : 26465154)@OsCML29 - Calmodulin-related calcium sensor protein, expressed | - |
| 8 | Sobic.010G096300 | -(PubMedID : 22968911)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GLK genes are members of the GARP superfamily and functions in a BS or M cell-type specific manner to regulate the proplastid to chloroplast transition(PubMedID : 22968911)@myb-like DNA-binding domain containing protein, expressed | - |
| 9 | Sobic.004G186200 | thioredoxin, putative, expressed | - |
| 10 | Sobic.002G104000 | - | - |
| 11 | Sobic.010G218600 | inactive receptor kinase At2g26730 precursor, putative, expressed | - |
| 12 | Sobic.004G122200 | expressed protein | - |
| 13 | Sobic.010G225600 | - | - |
| 14 | Sobic.003G110700 | nuclear transport factor, putative, expressed | - |
| 15 | Sobic.009G196800 | cytochrome P450, putative, expressed | - |
| 16 | Sobic.009G085500 | hydrolase, alpha/beta fold family protein, putative, expressed | - |
| 17 | Sobic.006G135100 | B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed | - |
| 18 | Sobic.008G036350 | - | - |
| 19 | Sobic.008G015100 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed | K14487: auxin responsive GH3 gene family |
| 20 | Sobic.002G033800 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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