Gene annotation
Transcriptome id Sobic.007G130400.2,Sobic.007G130400.1,Sobic.007G130400.3
Synonym
Functional annotation FAD dependent oxidoreductase, putative, expressed
UniProt A0A1Z5RAI8 , A0A1B6PHL1 , A0A1Z5R9L9
Pfam PF05834
Panther DB PTHR32098 PTHR32098:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016705; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0016117carotenoid biosynthetic process


Orthologs (automatic annotation)
TAIR AT2G32640 : Lycopene beta/epsilon cyclase protein
RAP-DB (Rice) LOC_Os08g32630.1 : FAD dependent oxidoreductase, putative, expressed
MaizeGDB (Corn) Zm00025a031054
Brachypodium KQJ98308 , KQJ98309 , KQJ98306 , KQJ98307
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G167900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
2 Sobic.006G063900 NAD dependent epimerase/dehydratase family protein, putative, expressed -
3 Sobic.004G359600 cell division inhibitor, putative, expressed K07071: uncharacterized protein
4 Sobic.003G058700 5-azacytidine resistance protein azr1, putative, expressed -
5 Sobic.002G351600 prenyltransferase, putative, expressed K12501: homogentisate solanesyltransferase
6 Sobic.004G028300 expressed protein -
7 Sobic.004G124400 uncharacterized conserved membrane protein specific to cyanobacteria, putative, expressed -
8 Sobic.006G108200 expressed protein -
9 Sobic.007G225500 expressed protein -
10 Sobic.007G173800 uncharacterized protein ycf39, putative, expressed -
11 Sobic.008G172700 OsDegp15 - Putative Deg protease homologue, expressed -
12 Sobic.002G223700 OsRhmbd15 - Putative Rhomboid homologue, expressed -
13 Sobic.002G275300 deoxyribodipyrimidine photolyase family protein, expressed -
14 Sobic.007G166300 PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
15 Sobic.001G436400 immature colon carcinoma transcript 1 protein precursor, putative, expressed K15033: peptidyl-tRNA hydrolase ICT1
16 Sobic.008G102000 Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed -
17 Sobic.007G181400 TraB family protein, putative, expressed -
18 Sobic.006G265900 thioredoxin, putative, expressed K03671: thioredoxin 1
19 Sobic.001G350000 expressed protein -
20 Sobic.006G197300 expressed protein -


Gene co-expression network
sample Sobic007G130400 Sobic007G130400 Sobic001G167900 Sobic001G167900 Sobic007G130400--Sobic001G167900 Sobic006G063900 Sobic006G063900 Sobic007G130400--Sobic006G063900 Sobic004G359600 Sobic004G359600 Sobic007G130400--Sobic004G359600 Sobic003G058700 Sobic003G058700 Sobic007G130400--Sobic003G058700 Sobic002G351600 Sobic002G351600 Sobic007G130400--Sobic002G351600 Sobic004G028300 Sobic004G028300 Sobic007G130400--Sobic004G028300 Sobic004G124400 Sobic004G124400 Sobic007G130400--Sobic004G124400 Sobic006G108200 Sobic006G108200 Sobic007G130400--Sobic006G108200 Sobic007G225500 Sobic007G225500 Sobic007G130400--Sobic007G225500 Sobic001G167900--Sobic004G028300 Sobic001G167900--Sobic004G124400 Sobic001G167900--Sobic004G359600 Sobic001G167900--Sobic006G063900 Sobic001G015200 Sobic001G015200 Sobic001G167900--Sobic001G015200 Sobic008G088821 Sobic008G088821 Sobic001G167900--Sobic008G088821 Sobic001G167900--Sobic002G351600 Sobic007G166300 Sobic007G166300 Sobic001G167900--Sobic007G166300 Sobic001G167900--Sobic007G130400 Sobic006G063900--Sobic004G124400 Sobic006G063900--Sobic001G167900 Sobic005G028800 Sobic005G028800 Sobic006G063900--Sobic005G028800 Sobic006G063900--Sobic004G028300 Sobic006G063900--Sobic007G166300 Sobic006G235350 Sobic006G235350 Sobic006G063900--Sobic006G235350 Sobic006G140500 Sobic006G140500 Sobic006G063900--Sobic006G140500 Sobic006G063900--Sobic001G015200 Sobic007G169100 Sobic007G169100 Sobic006G063900--Sobic007G169100 Sobic007G173800 Sobic007G173800 Sobic004G359600--Sobic007G173800 Sobic004G359600--Sobic001G167900 Sobic008G102000 Sobic008G102000 Sobic004G359600--Sobic008G102000 Sobic007G181400 Sobic007G181400 Sobic004G359600--Sobic007G181400 Sobic003G378600 Sobic003G378600 Sobic004G359600--Sobic003G378600 Sobic006G265900 Sobic006G265900 Sobic004G359600--Sobic006G265900 Sobic001G005200 Sobic001G005200 Sobic004G359600--Sobic001G005200 Sobic008G172700 Sobic008G172700 Sobic004G359600--Sobic008G172700 Sobic009G140600 Sobic009G140600 Sobic004G359600--Sobic009G140600 Sobic003G058700--Sobic007G130400 Sobic003G058700--Sobic001G167900 Sobic003G058700--Sobic004G124400 Sobic003G058700--Sobic007G166300 Sobic007G124500 Sobic007G124500 Sobic003G058700--Sobic007G124500 Sobic003G058700--Sobic005G028800 Sobic004G103300 Sobic004G103300 Sobic003G058700--Sobic004G103300 Sobic010G231500 Sobic010G231500 Sobic003G058700--Sobic010G231500 Sobic003G058700--Sobic006G063900 Sobic008G050400 Sobic008G050400 Sobic002G351600--Sobic008G050400 Sobic002G272100 Sobic002G272100 Sobic002G351600--Sobic002G272100 Sobic002G351600--Sobic001G167900 Sobic002G401800 Sobic002G401800 Sobic002G351600--Sobic002G401800 Sobic002G351600--Sobic008G172700 Sobic002G351600--Sobic006G108200 Sobic004G055000 Sobic004G055000 Sobic002G351600--Sobic004G055000 Sobic002G351600--Sobic004G124400 Sobic003G275200 Sobic003G275200 Sobic002G351600--Sobic003G275200 Sobic004G028300--Sobic008G088821 Sobic004G028300--Sobic001G167900 Sobic004G028300--Sobic006G140500 Sobic004G028300--Sobic006G063900 Sobic004G028300--Sobic001G015200 Sobic005G134100 Sobic005G134100 Sobic004G028300--Sobic005G134100 Sobic003G419900 Sobic003G419900 Sobic004G028300--Sobic003G419900 Sobic004G028300--Sobic004G359600 Sobic004G028300--Sobic006G108200 Sobic004G124400--Sobic005G028800 Sobic004G124400--Sobic006G063900 Sobic004G124400--Sobic007G166300 Sobic004G124400--Sobic001G167900 Sobic004G124400--Sobic010G231500 Sobic002G061900 Sobic002G061900 Sobic004G124400--Sobic002G061900 Sobic006G097500 Sobic006G097500 Sobic004G124400--Sobic006G097500 Sobic001G436400 Sobic001G436400 Sobic004G124400--Sobic001G436400 Sobic004G124400--Sobic004G359600 Sobic006G108200--Sobic003G275200 Sobic006G108200--Sobic002G351600 Sobic006G108200--Sobic004G055000 Sobic006G108200--Sobic004G028300 Sobic004G154800 Sobic004G154800 Sobic006G108200--Sobic004G154800 Sobic002G200900 Sobic002G200900 Sobic006G108200--Sobic002G200900 Sobic001G220000 Sobic001G220000 Sobic006G108200--Sobic001G220000 Sobic006G108200--Sobic001G167900 Sobic006G108200--Sobic005G134100 Sobic003G002300 Sobic003G002300 Sobic007G225500--Sobic003G002300 Sobic010G035400 Sobic010G035400 Sobic007G225500--Sobic010G035400 Sobic007G225500--Sobic008G102000 Sobic007G052400 Sobic007G052400 Sobic007G225500--Sobic007G052400 Sobic008G171300 Sobic008G171300 Sobic007G225500--Sobic008G171300 Sobic009G043000 Sobic009G043000 Sobic007G225500--Sobic009G043000 Sobic002G275300 Sobic002G275300 Sobic007G225500--Sobic002G275300 Sobic006G077400 Sobic006G077400 Sobic007G225500--Sobic006G077400 Sobic010G201700 Sobic010G201700 Sobic007G225500--Sobic010G201700
Octagon: transcription factors


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